Wall clock time and date at job start Tue Mar 31 2020 08:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86793 * 120.00305 * 2 1 4 4 H 1.48501 * 109.47204 * 239.99941 * 3 2 1 5 5 H 1.48500 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47321 * 119.99790 * 3 2 1 7 7 C 1.37875 * 119.99695 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00481 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47687 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47413 * 179.97438 * 10 9 7 12 12 O 1.21296 * 119.99769 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00373 * 179.97438 * 11 10 9 14 14 C 1.46539 * 124.98235 * 180.02562 * 13 11 10 15 15 C 1.53743 * 105.19607 * 180.02562 * 14 13 11 16 16 C 1.51215 * 104.58531 * 359.77603 * 15 14 13 17 17 C 1.38180 * 130.96921 * 179.52826 * 16 15 14 18 18 C 1.38230 * 120.14967 * 180.39801 * 17 16 15 19 19 N 1.48019 * 120.08769 * 180.25687 * 18 17 16 20 20 O 1.21803 * 119.99644 * 0.02562 * 19 18 17 21 21 O 1.21801 * 120.00087 * 179.97438 * 19 18 17 22 22 C 1.38298 * 119.82710 * 0.28059 * 18 17 16 23 23 C 1.37836 * 120.22302 * 359.97438 * 22 18 17 24 24 C 1.38563 * 108.55706 * 0.38284 * 16 15 14 25 25 H 0.97001 * 120.00184 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46750 * 59.99372 * 9 7 2 27 27 H 1.09005 * 109.46632 * 300.00184 * 9 7 2 28 28 H 1.09004 * 109.46931 * 59.99722 * 10 9 7 29 29 H 1.08996 * 109.47018 * 300.00369 * 10 9 7 30 30 H 1.08993 * 110.29763 * 298.95489 * 14 13 11 31 31 H 1.09006 * 110.29306 * 61.09573 * 14 13 11 32 32 H 1.09001 * 110.40794 * 118.77820 * 15 14 13 33 33 H 1.09003 * 110.41257 * 241.10513 * 15 14 13 34 34 H 1.08002 * 119.92833 * 0.68362 * 17 16 15 35 35 H 1.07998 * 119.88641 * 179.97438 * 22 18 17 36 36 H 1.08006 * 119.85811 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2786 -4.9671 0.0011 13 7 2.1653 -6.1344 0.0008 14 6 1.5455 -7.4623 0.0008 15 6 2.7195 -8.4550 0.0009 16 6 3.9552 -7.5834 -0.0048 17 6 5.2969 -7.9138 0.0015 18 6 6.2568 -6.9192 0.0023 19 7 7.6937 -7.2746 0.0033 20 8 8.0315 -8.4449 0.0029 21 8 8.5382 -6.3969 0.0035 22 6 5.8712 -5.5910 0.0027 23 6 4.5340 -5.2568 0.0017 24 6 3.5584 -6.2558 0.0009 25 1 -0.4850 0.8400 -0.0004 26 1 0.6245 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8905 29 1 2.8717 -3.6044 -0.8894 30 1 0.9374 -7.5957 0.8954 31 1 0.9375 -7.5957 -0.8941 32 1 2.6921 -9.0759 0.8963 33 1 2.6911 -9.0774 -0.8935 34 1 5.5963 -8.9515 0.0011 35 1 6.6204 -4.8132 0.0037 36 1 4.2394 -4.2177 0.0024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361464672.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:00 Heat of formation + Delta-G solvation = -7.880487 kcal Electronic energy + Delta-G solvation = -22272.043713 eV Core-core repulsion = 18724.598502 eV Total energy + Delta-G solvation = -3547.445211 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.28363 -41.46254 -38.97537 -36.71999 -36.58174 -34.01705 -33.18056 -31.20282 -30.91971 -29.73512 -26.54424 -26.20784 -23.77261 -23.48939 -22.07288 -21.03911 -20.00621 -19.10956 -18.72420 -17.57851 -17.49646 -16.66146 -16.60082 -16.13928 -15.01784 -14.83524 -14.71097 -14.48253 -14.28962 -13.76245 -13.33735 -13.10775 -12.98044 -12.59666 -12.29419 -12.10932 -11.78331 -11.60029 -11.34431 -11.20300 -11.11502 -11.03864 -10.90700 -10.70849 -10.23562 -10.00894 -9.61151 -9.54118 -9.29278 -8.47489 -8.39337 -6.10796 -4.16882 -0.27451 0.66952 1.17562 1.33238 2.45860 2.55976 3.12649 3.26403 3.32010 3.32982 3.77751 3.97527 4.26025 4.33724 4.42174 4.49313 4.65861 4.72675 4.98157 5.14487 5.23628 5.24877 5.39888 5.42221 5.44714 5.52263 5.63797 5.74396 5.78664 5.87309 6.08810 6.35478 6.51009 7.12205 7.53463 7.59111 7.59206 7.86042 7.95740 8.22446 8.89530 9.48203 10.99990 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.004166 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.088436 B = 6718.718131 C = 8446.638964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.533 4.533 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.137 4.137 11 C 0.520 3.480 12 O -0.491 6.491 13 N -0.559 5.559 14 C 0.099 3.901 15 C -0.081 4.081 16 C -0.149 4.149 17 C -0.007 4.007 18 C -0.084 4.084 19 N 0.040 4.960 20 O -0.175 6.175 21 O -0.167 6.167 22 C -0.014 4.014 23 C -0.165 4.165 24 C 0.221 3.779 25 H 0.263 0.737 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.153 0.847 35 H 0.160 0.840 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.541 -17.454 0.009 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.571 4.571 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.176 4.176 11 C 0.312 3.688 12 O -0.361 6.361 13 N -0.281 5.281 14 C -0.023 4.023 15 C -0.118 4.118 16 C -0.154 4.154 17 C -0.026 4.026 18 C -0.169 4.169 19 N 0.556 4.444 20 O -0.388 6.388 21 O -0.382 6.382 22 C -0.034 4.034 23 C -0.186 4.186 24 C 0.120 3.880 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.171 0.829 35 H 0.178 0.822 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.763 -17.051 0.010 18.343 hybrid contribution 0.794 0.768 0.001 1.105 sum 7.557 -16.283 0.010 17.951 Atomic orbital electron populations 1.69969 1.06135 1.27022 1.49486 1.25005 0.94840 0.99359 0.94927 0.86617 0.79566 0.82892 0.78705 1.20103 1.21187 1.20098 1.21088 0.92919 0.90681 1.52443 0.92439 1.18974 0.93048 0.89191 0.98933 1.22343 1.01322 0.91014 1.02962 1.21921 0.88600 0.84348 0.73885 1.90742 1.13837 1.86535 1.45027 1.46706 1.03834 1.08228 1.69288 1.22166 0.96002 0.79802 1.04319 1.21149 0.88957 0.97040 1.04671 1.19855 0.93719 0.93757 1.08034 1.20022 0.89629 0.99961 0.93036 1.20753 0.80072 0.95759 1.20330 1.43474 1.03342 1.00482 0.97103 1.94515 1.86445 1.03574 1.54222 1.94544 1.46227 1.43532 1.53860 1.20800 0.96736 0.94109 0.91726 1.21407 0.89935 1.01423 1.05883 1.18776 0.84382 0.94433 0.90375 0.92686 0.95560 0.95551 0.88998 0.88987 0.89294 0.89291 0.88384 0.88414 0.82899 0.82241 0.81139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.53 -14.12 9.11 -34.44 -0.31 -14.43 16 8 H 0.06 1.41 7.74 -52.48 -0.41 1.01 16 9 C 0.04 0.89 4.26 -27.88 -0.12 0.77 16 10 C -0.14 -2.49 3.46 -27.89 -0.10 -2.58 16 11 C 0.52 9.06 7.80 -10.99 -0.09 8.97 16 12 O -0.49 -10.36 16.27 5.54 0.09 -10.27 16 13 N -0.56 -7.38 3.13 -112.89 -0.35 -7.73 16 14 C 0.10 0.96 7.06 -3.63 -0.03 0.94 16 15 C -0.08 -0.56 6.93 -27.24 -0.19 -0.75 16 16 C -0.15 -1.40 6.23 -104.27 -0.65 -2.05 16 17 C -0.01 -0.06 9.55 -39.61 -0.38 -0.44 16 18 C -0.08 -0.93 6.86 -79.93 -0.55 -1.48 16 19 N 0.04 0.52 4.45 33.97 0.15 0.67 16 20 O -0.17 -2.34 18.46 -29.46 -0.54 -2.88 16 21 O -0.17 -2.32 18.46 -29.46 -0.54 -2.87 16 22 C -0.01 -0.15 9.53 -39.71 -0.38 -0.52 16 23 C -0.17 -1.84 8.88 -39.21 -0.35 -2.19 16 24 C 0.22 2.55 6.59 -83.57 -0.55 2.00 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 27 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.09 1.50 6.91 -51.93 -0.36 1.14 16 29 H 0.09 1.50 6.91 -51.93 -0.36 1.14 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.15 1.15 7.61 -52.49 -0.40 0.75 16 35 H 0.16 1.47 7.61 -52.49 -0.40 1.07 16 36 H 0.17 1.95 4.21 -52.48 -0.22 1.73 16 LS Contribution 314.71 15.07 4.74 4.74 Total: -1.00 -32.44 314.71 -8.33 -40.77 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -3.81 Total: -2.56 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -3.78 Total: -10.16 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.53 Total: -32.49 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -1.00 Total: -16.02 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.44 -8.33 -40.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361464672.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.894 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds