Wall clock time and date at job start Tue Mar 31 2020 08:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86793 * 120.00305 * 2 1 4 4 H 1.48501 * 109.47204 * 239.99941 * 3 2 1 5 5 H 1.48500 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47321 * 119.99790 * 3 2 1 7 7 C 1.37875 * 119.99695 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00481 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47687 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47413 * 179.97438 * 10 9 7 12 12 O 1.21296 * 119.99769 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00373 * 179.97438 * 11 10 9 14 14 C 1.46539 * 124.98235 * 180.02562 * 13 11 10 15 15 C 1.53743 * 105.19607 * 180.02562 * 14 13 11 16 16 C 1.51215 * 104.58531 * 359.77603 * 15 14 13 17 17 C 1.38180 * 130.96921 * 179.52826 * 16 15 14 18 18 C 1.38230 * 120.14967 * 180.39801 * 17 16 15 19 19 N 1.48019 * 120.08769 * 180.25687 * 18 17 16 20 20 O 1.21803 * 119.99644 * 0.02562 * 19 18 17 21 21 O 1.21801 * 120.00087 * 179.97438 * 19 18 17 22 22 C 1.38298 * 119.82710 * 0.28059 * 18 17 16 23 23 C 1.37836 * 120.22302 * 359.97438 * 22 18 17 24 24 C 1.38563 * 108.55706 * 0.38284 * 16 15 14 25 25 H 0.97001 * 120.00184 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46750 * 59.99372 * 9 7 2 27 27 H 1.09005 * 109.46632 * 300.00184 * 9 7 2 28 28 H 1.09004 * 109.46931 * 59.99722 * 10 9 7 29 29 H 1.08996 * 109.47018 * 300.00369 * 10 9 7 30 30 H 1.08993 * 110.29763 * 298.95489 * 14 13 11 31 31 H 1.09006 * 110.29306 * 61.09573 * 14 13 11 32 32 H 1.09001 * 110.40794 * 118.77820 * 15 14 13 33 33 H 1.09003 * 110.41257 * 241.10513 * 15 14 13 34 34 H 1.08002 * 119.92833 * 0.68362 * 17 16 15 35 35 H 1.07998 * 119.88641 * 179.97438 * 22 18 17 36 36 H 1.08006 * 119.85811 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2786 -4.9671 0.0011 13 7 2.1653 -6.1344 0.0008 14 6 1.5455 -7.4623 0.0008 15 6 2.7195 -8.4550 0.0009 16 6 3.9552 -7.5834 -0.0048 17 6 5.2969 -7.9138 0.0015 18 6 6.2568 -6.9192 0.0023 19 7 7.6937 -7.2746 0.0033 20 8 8.0315 -8.4449 0.0029 21 8 8.5382 -6.3969 0.0035 22 6 5.8712 -5.5910 0.0027 23 6 4.5340 -5.2568 0.0017 24 6 3.5584 -6.2558 0.0009 25 1 -0.4850 0.8400 -0.0004 26 1 0.6245 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8905 29 1 2.8717 -3.6044 -0.8894 30 1 0.9374 -7.5957 0.8954 31 1 0.9375 -7.5957 -0.8941 32 1 2.6921 -9.0759 0.8963 33 1 2.6911 -9.0774 -0.8935 34 1 5.5963 -8.9515 0.0011 35 1 6.6204 -4.8132 0.0037 36 1 4.2394 -4.2177 0.0024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361464672.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:58 Heat of formation + Delta-G solvation = -26.433433 kcal Electronic energy + Delta-G solvation = -22272.848229 eV Core-core repulsion = 18724.598502 eV Total energy + Delta-G solvation = -3548.249727 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -43.24101 -42.45613 -40.19320 -37.70667 -37.58125 -35.76754 -34.42894 -32.80246 -31.94317 -30.58360 -28.02922 -27.42949 -25.01045 -24.47221 -23.18769 -22.28655 -21.17866 -20.04943 -19.70463 -18.97948 -18.54444 -17.91616 -17.65523 -17.52818 -16.55174 -16.01156 -15.96903 -15.72472 -15.34120 -14.55451 -14.44286 -14.29124 -14.13219 -14.07707 -13.32274 -13.21288 -13.04369 -12.82412 -12.67682 -12.56000 -12.34776 -12.23749 -12.21960 -12.08059 -11.80677 -11.65447 -11.39015 -11.15823 -10.58820 -10.31742 -9.34430 -8.21335 -6.35254 -1.23770 -0.10896 0.18802 0.40744 1.31329 1.40402 1.44853 1.45864 1.53693 2.23755 2.40547 2.98777 3.10638 3.12968 3.46123 3.54987 3.67058 3.91263 3.95334 4.04407 4.22739 4.30268 4.43109 4.45898 4.56070 4.69878 4.77008 4.85706 4.88776 4.90757 5.05083 5.15687 5.42694 5.44204 5.51217 5.77941 5.96701 6.10451 6.55631 6.68372 6.83966 7.35650 8.90990 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.004166 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.088436 B = 6718.718131 C = 8446.638964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.041 3.959 10 C -0.126 4.126 11 C 0.524 3.476 12 O -0.542 6.542 13 N -0.556 5.556 14 C 0.088 3.912 15 C -0.069 4.069 16 C -0.131 4.131 17 C 0.002 3.998 18 C -0.088 4.088 19 N 0.040 4.960 20 O -0.173 6.173 21 O -0.195 6.195 22 C -0.014 4.014 23 C -0.167 4.167 24 C 0.197 3.803 25 H 0.263 0.737 26 H -0.013 1.013 27 H -0.013 1.013 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.179 0.821 35 H 0.169 0.831 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.713 -19.088 0.010 21.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.097 0.903 9 C 0.004 3.996 10 C -0.165 4.165 11 C 0.316 3.684 12 O -0.418 6.418 13 N -0.277 5.277 14 C -0.032 4.032 15 C -0.106 4.106 16 C -0.135 4.135 17 C -0.018 4.018 18 C -0.173 4.173 19 N 0.553 4.447 20 O -0.388 6.388 21 O -0.404 6.404 22 C -0.033 4.033 23 C -0.188 4.188 24 C 0.098 3.902 25 H 0.072 0.928 26 H 0.006 0.994 27 H 0.006 0.994 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.196 0.804 35 H 0.187 0.813 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 9.034 -18.698 0.010 20.766 hybrid contribution 0.141 1.145 0.000 1.154 sum 9.175 -17.553 0.010 19.806 Atomic orbital electron populations 1.70144 1.08250 1.27954 1.51211 1.26052 0.95636 1.03747 0.94532 0.85435 0.78121 0.77597 0.79511 1.18715 1.21521 1.18704 1.21630 0.94110 0.91286 1.51162 0.90275 1.18737 0.93590 0.92063 0.95242 1.22112 0.99844 0.89501 1.05028 1.21522 0.87799 0.85469 0.73578 1.90721 1.15704 1.87405 1.47941 1.46429 1.04733 1.08167 1.68363 1.22496 0.97469 0.78563 1.04697 1.21270 0.85735 0.96092 1.07465 1.20065 0.94401 0.93134 1.05892 1.20249 0.88982 1.00785 0.91768 1.20924 0.79201 0.96492 1.20678 1.43709 1.03993 1.00275 0.96700 1.94497 1.86849 1.03689 1.53765 1.94549 1.47017 1.43584 1.55231 1.20871 0.96624 0.94424 0.91405 1.21348 0.90163 1.01244 1.06026 1.19003 0.83435 0.95824 0.91960 0.92801 0.99422 0.99413 0.86851 0.86845 0.89065 0.89069 0.85532 0.85572 0.80395 0.81307 0.81645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.17 13.29 21.45 0.28 -56.89 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.97 42.59 29.54 68.60 2.03 44.62 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.54 -29.14 9.11 25.60 0.23 -28.91 16 8 H 0.08 3.79 7.74 -2.91 -0.02 3.77 16 9 C 0.04 2.14 4.26 29.85 0.13 2.27 16 10 C -0.13 -4.60 3.46 29.85 0.10 -4.50 16 11 C 0.52 18.54 7.80 87.66 0.68 19.22 16 12 O -0.54 -24.04 16.27 -3.08 -0.05 -24.09 16 13 N -0.56 -14.00 3.13 -629.47 -1.97 -15.97 16 14 C 0.09 1.53 7.06 86.62 0.61 2.15 16 15 C -0.07 -0.65 6.93 30.26 0.21 -0.44 16 16 C -0.13 -1.95 6.23 -19.64 -0.12 -2.08 16 17 C 0.00 0.03 9.55 22.25 0.21 0.24 16 18 C -0.09 -1.71 6.86 36.39 0.25 -1.46 16 19 N 0.04 0.96 4.45 -46.43 -0.21 0.75 16 20 O -0.17 -4.20 18.46 18.88 0.35 -3.85 16 21 O -0.20 -5.19 18.46 18.88 0.35 -4.85 16 22 C -0.01 -0.26 9.53 22.19 0.21 -0.04 16 23 C -0.17 -3.39 8.88 22.51 0.20 -3.19 16 24 C 0.20 4.09 6.59 38.28 0.25 4.34 16 25 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 26 H -0.01 -0.75 8.10 -2.38 -0.02 -0.76 16 27 H -0.01 -0.74 8.10 -2.38 -0.02 -0.76 16 28 H 0.11 3.62 6.91 -2.38 -0.02 3.60 16 29 H 0.11 3.62 6.91 -2.39 -0.02 3.61 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.18 1.79 7.61 -2.91 -0.02 1.77 16 35 H 0.17 2.82 7.61 -2.91 -0.02 2.79 16 36 H 0.17 3.51 4.21 -2.91 -0.01 3.49 16 Total: -1.00 -73.94 314.71 5.34 -68.61 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: 1.12 Total: 3.70 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 3.43 Total: -12.03 kcal Atomic # 7 Polarization: -70.22 SS G_CDS: -1.89 Total: -72.11 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: 0.65 Total: -32.78 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -73.94 5.34 -68.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361464672.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.172 kcal (2) G-P(sol) polarization free energy of solvation -73.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds