Wall clock time and date at job start Tue Mar 31 2020 05:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35545 * 117.00220 * 2 1 4 4 N 1.29506 * 124.94117 * 359.97438 * 3 2 1 5 5 C 1.32073 * 116.92859 * 180.02562 * 4 3 2 6 6 C 1.33375 * 114.55775 * 359.97438 * 5 4 3 7 7 C 1.50696 * 125.97265 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.47343 * 90.00206 * 7 6 5 9 9 C 1.38854 * 120.00629 * 179.97438 * 8 7 6 10 10 C 1.39566 * 119.84597 * 179.97438 * 9 8 7 11 11 C 1.36338 * 120.16116 * 180.25508 * 10 9 8 12 12 C 1.40893 * 119.83636 * 359.50729 * 11 10 9 13 13 C 1.41133 * 120.15364 * 180.25178 * 12 11 10 14 14 H 1.07994 * 120.00344 * 24.83920 * 13 12 11 15 15 C 1.39866 * 119.99916 * 204.83980 * 13 12 11 16 16 N 1.30910 * 119.99864 * 17.95871 * 15 13 12 17 17 Si 1.86802 * 120.00165 * 197.96719 * 15 13 12 18 18 H 1.48492 * 109.47275 * 59.99742 * 17 15 13 19 19 H 1.48502 * 109.46983 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.46916 * 299.99642 * 17 15 13 21 21 C 1.40883 * 119.68755 * 0.47142 * 12 11 10 22 22 C 1.36338 * 119.83541 * 359.77859 * 21 12 11 23 23 S 1.70968 * 124.94343 * 180.30644 * 3 2 1 24 24 H 1.08999 * 109.47172 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47202 * 300.00279 * 1 2 3 26 26 H 1.09004 * 109.46942 * 60.00404 * 1 2 3 27 27 H 1.08005 * 122.72388 * 180.02562 * 5 4 3 28 28 H 1.09007 * 109.47283 * 330.00231 * 7 6 5 29 29 H 1.09002 * 109.47280 * 210.00395 * 7 6 5 30 30 H 0.97005 * 119.99646 * 0.02562 * 8 7 6 31 31 H 1.08002 * 119.91752 * 359.97438 * 10 9 8 32 32 H 1.07995 * 120.08351 * 179.74617 * 11 10 9 33 33 H 0.97001 * 120.00040 * 179.97438 * 16 15 13 34 34 H 1.08002 * 120.07962 * 179.76054 * 21 12 11 35 35 H 1.08005 * 119.92015 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 7 1.4353 2.3506 -0.0005 5 6 2.1931 3.4322 -0.0009 6 6 3.5047 3.1902 -0.0003 7 6 4.5965 4.2288 -0.0011 8 7 4.9500 4.5669 1.3798 9 6 5.9394 5.5077 1.6329 10 6 6.2731 5.8277 2.9497 11 6 7.2399 6.7543 3.2056 12 6 7.9099 7.3818 2.1367 13 6 8.9155 8.3380 2.3939 14 1 9.4553 8.3159 3.3290 15 6 9.2131 9.3144 1.4377 16 7 8.3592 9.5745 0.4801 17 14 10.8291 10.2472 1.5267 18 1 11.9596 9.2896 1.4255 19 1 10.9022 11.2188 0.4061 20 1 10.9104 10.9742 2.8190 21 6 7.5681 7.0535 0.8100 22 6 6.5957 6.1287 0.5691 23 16 3.7376 1.4439 -0.0075 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.7839 4.4318 -0.0009 28 1 4.2465 5.1236 -0.5160 29 1 5.4733 3.8339 -0.5143 30 1 4.4933 4.1330 2.1175 31 1 5.7610 5.3434 3.7681 32 1 7.4943 7.0039 4.2250 33 1 8.5653 10.2519 -0.1828 34 1 8.0749 7.5334 -0.0141 35 1 6.3322 5.8763 -0.4475 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386292926.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:34 Heat of formation + Delta-G solvation = 38.688704 kcal Electronic energy + Delta-G solvation = -19087.338584 eV Core-core repulsion = 15984.665635 eV Total energy + Delta-G solvation = -3102.672948 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.083 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.36078 -38.39879 -37.82023 -35.22662 -33.16303 -30.80616 -29.47128 -28.59919 -28.00933 -25.90885 -24.30203 -23.47594 -21.16838 -20.43334 -19.98738 -18.83867 -17.21328 -17.11956 -16.56584 -16.20066 -15.29362 -15.14751 -14.95070 -14.25348 -13.91481 -13.71249 -13.62168 -12.93877 -12.64620 -12.37945 -12.34172 -11.87446 -11.76544 -11.57146 -11.48257 -11.15542 -11.01290 -10.85092 -10.47608 -9.98493 -9.73366 -9.48048 -9.29135 -9.24208 -8.60719 -8.56398 -7.50698 -6.65278 -6.41823 -4.04534 0.60459 0.63950 1.55640 2.63194 2.92322 3.09296 3.14214 3.16049 3.17497 3.35139 4.05078 4.14941 4.41531 4.75349 4.84687 4.92605 4.94220 5.19661 5.24156 5.70574 5.78895 5.85063 5.94059 6.25758 6.30208 6.60854 6.88262 6.92600 7.19033 7.34799 7.42891 7.52673 7.67726 7.82284 8.14145 8.26701 8.46221 8.66193 8.77779 9.05265 9.13924 10.36609 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.052327 B = 0.002653 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.965772 B =10551.040188 C =10685.696989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.282 6.282 3 C 0.214 3.786 4 N -0.537 5.537 5 C 0.082 3.918 6 C -0.255 4.255 7 C 0.221 3.779 8 N -0.758 5.758 9 C 0.089 3.911 10 C -0.155 4.155 11 C -0.187 4.187 12 C 0.076 3.924 13 C -0.467 4.467 14 H 0.072 0.928 15 C 0.075 3.925 16 N -0.807 5.807 17 Si 0.903 3.097 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.268 1.268 21 C -0.125 4.125 22 C -0.163 4.163 23 S 0.197 5.803 24 H 0.102 0.898 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.181 0.819 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.386 0.614 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.277 0.723 34 H 0.119 0.881 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.371 -14.452 -3.518 18.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.189 6.189 3 C -0.102 4.102 4 N -0.268 5.268 5 C -0.068 4.068 6 C -0.377 4.377 7 C 0.093 3.907 8 N -0.395 5.395 9 C -0.007 4.007 10 C -0.177 4.177 11 C -0.207 4.207 12 C 0.073 3.927 13 C -0.498 4.498 14 H 0.090 0.910 15 C -0.141 4.141 16 N -0.434 5.434 17 Si 0.728 3.272 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.193 1.193 21 C -0.145 4.145 22 C -0.185 4.185 23 S 0.449 5.551 24 H 0.120 0.880 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.198 0.802 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.218 0.782 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.010 -15.256 -3.933 19.221 hybrid contribution -0.286 1.295 0.264 1.352 sum -11.296 -13.961 -3.669 18.330 Atomic orbital electron populations 1.23021 0.76584 1.03473 1.02857 1.86313 1.23206 1.21189 1.88176 1.25299 0.95588 0.88631 1.00635 1.66677 1.39361 0.97246 1.23541 1.21332 0.88542 0.97366 0.99570 1.25963 0.99345 0.96364 1.16001 1.19228 0.92090 0.92694 0.86686 1.43899 1.43737 1.47939 1.03974 1.17308 0.94376 0.95592 0.93436 1.19799 1.02150 1.02733 0.93042 1.20553 1.00029 1.02541 0.97615 1.17501 0.92158 0.92132 0.90939 1.19339 1.17260 1.10810 1.02390 0.90960 1.25802 0.97164 0.96580 0.94517 1.69847 1.33170 1.27580 1.12822 0.86456 0.82946 0.79247 0.78501 1.19080 1.20589 1.19267 1.20935 0.98605 0.97320 0.97654 1.20085 1.01333 1.01796 0.95294 1.84195 0.98977 1.01732 1.70227 0.87996 0.91951 0.91982 0.80216 0.90997 0.92199 0.78185 0.89598 0.89018 0.91244 0.86337 0.89371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.63 101.05 1.07 1.37 16 2 O -0.28 -3.07 10.56 -18.33 -0.19 -3.26 16 3 C 0.21 2.59 8.13 51.78 0.42 3.02 16 4 N -0.54 -6.90 9.88 -16.01 -0.16 -7.06 16 5 C 0.08 1.01 11.24 -19.15 -0.22 0.79 16 6 C -0.26 -3.18 5.95 -36.01 -0.21 -3.40 16 7 C 0.22 3.15 5.42 -5.20 -0.03 3.12 16 8 N -0.76 -12.83 5.69 -59.67 -0.34 -13.17 16 9 C 0.09 1.90 6.67 -83.69 -0.56 1.34 16 10 C -0.16 -3.44 9.82 -39.77 -0.39 -3.84 16 11 C -0.19 -4.60 9.74 -39.26 -0.38 -4.99 16 12 C 0.08 2.03 5.57 -106.79 -0.60 1.43 16 13 C -0.47 -12.61 9.03 -37.88 -0.34 -12.95 16 14 H 0.07 1.88 7.91 -52.49 -0.41 1.47 16 15 C 0.07 1.92 5.13 -17.34 -0.09 1.83 16 16 N -0.81 -21.28 10.96 55.54 0.61 -20.67 16 17 Si 0.90 19.14 29.60 -169.99 -5.03 14.11 16 18 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 C -0.13 -3.24 8.64 -39.27 -0.34 -3.58 16 22 C -0.16 -3.72 9.23 -39.77 -0.37 -4.09 16 23 S 0.20 2.24 23.22 -107.50 -2.50 -0.26 16 24 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.18 1.95 8.06 -52.48 -0.42 1.52 16 28 H 0.07 1.03 7.93 -51.93 -0.41 0.62 16 29 H 0.06 0.87 7.92 -51.93 -0.41 0.45 16 30 H 0.39 6.05 8.46 -40.82 -0.35 5.70 16 31 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 33 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 34 H 0.12 3.18 6.16 -52.49 -0.32 2.85 16 35 H 0.09 1.80 6.68 -52.48 -0.35 1.45 16 LS Contribution 318.38 15.07 4.80 4.80 Total: -1.00 -28.89 318.38 -8.77 -37.66 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -3.93 Total: 7.79 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -2.03 Total: -19.93 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.11 Total: -40.90 kcal Atomic # 8 Polarization: -3.07 SS G_CDS: -0.19 Total: -3.26 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.50 Total: -0.26 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.89 -8.77 -37.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386292926.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.345 kcal (2) G-P(sol) polarization free energy of solvation -28.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds