Wall clock time and date at job start Tue Mar 31 2020 05:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35545 * 117.00220 * 2 1 4 4 N 1.29506 * 124.94117 * 359.97438 * 3 2 1 5 5 C 1.32073 * 116.92859 * 180.02562 * 4 3 2 6 6 C 1.33375 * 114.55775 * 359.97438 * 5 4 3 7 7 C 1.50696 * 125.97265 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.47343 * 90.00206 * 7 6 5 9 9 C 1.38854 * 120.00629 * 179.97438 * 8 7 6 10 10 C 1.39566 * 119.84597 * 179.97438 * 9 8 7 11 11 C 1.36338 * 120.16116 * 180.25508 * 10 9 8 12 12 C 1.40893 * 119.83636 * 359.50729 * 11 10 9 13 13 C 1.41133 * 120.15364 * 180.25178 * 12 11 10 14 14 H 1.07994 * 120.00344 * 24.83920 * 13 12 11 15 15 C 1.39866 * 119.99916 * 204.83980 * 13 12 11 16 16 N 1.30910 * 119.99864 * 17.95871 * 15 13 12 17 17 Si 1.86802 * 120.00165 * 197.96719 * 15 13 12 18 18 H 1.48492 * 109.47275 * 59.99742 * 17 15 13 19 19 H 1.48502 * 109.46983 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.46916 * 299.99642 * 17 15 13 21 21 C 1.40883 * 119.68755 * 0.47142 * 12 11 10 22 22 C 1.36338 * 119.83541 * 359.77859 * 21 12 11 23 23 S 1.70968 * 124.94343 * 180.30644 * 3 2 1 24 24 H 1.08999 * 109.47172 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47202 * 300.00279 * 1 2 3 26 26 H 1.09004 * 109.46942 * 60.00404 * 1 2 3 27 27 H 1.08005 * 122.72388 * 180.02562 * 5 4 3 28 28 H 1.09007 * 109.47283 * 330.00231 * 7 6 5 29 29 H 1.09002 * 109.47280 * 210.00395 * 7 6 5 30 30 H 0.97005 * 119.99646 * 0.02562 * 8 7 6 31 31 H 1.08002 * 119.91752 * 359.97438 * 10 9 8 32 32 H 1.07995 * 120.08351 * 179.74617 * 11 10 9 33 33 H 0.97001 * 120.00040 * 179.97438 * 16 15 13 34 34 H 1.08002 * 120.07962 * 179.76054 * 21 12 11 35 35 H 1.08005 * 119.92015 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 7 1.4353 2.3506 -0.0005 5 6 2.1931 3.4322 -0.0009 6 6 3.5047 3.1902 -0.0003 7 6 4.5965 4.2288 -0.0011 8 7 4.9500 4.5669 1.3798 9 6 5.9394 5.5077 1.6329 10 6 6.2731 5.8277 2.9497 11 6 7.2399 6.7543 3.2056 12 6 7.9099 7.3818 2.1367 13 6 8.9155 8.3380 2.3939 14 1 9.4553 8.3159 3.3290 15 6 9.2131 9.3144 1.4377 16 7 8.3592 9.5745 0.4801 17 14 10.8291 10.2472 1.5267 18 1 11.9596 9.2896 1.4255 19 1 10.9022 11.2188 0.4061 20 1 10.9104 10.9742 2.8190 21 6 7.5681 7.0535 0.8100 22 6 6.5957 6.1287 0.5691 23 16 3.7376 1.4439 -0.0075 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.7839 4.4318 -0.0009 28 1 4.2465 5.1236 -0.5160 29 1 5.4733 3.8339 -0.5143 30 1 4.4933 4.1330 2.1175 31 1 5.7610 5.3434 3.7681 32 1 7.4943 7.0039 4.2250 33 1 8.5653 10.2519 -0.1828 34 1 8.0749 7.5334 -0.0141 35 1 6.3322 5.8763 -0.4475 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386292926.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:33 Heat of formation + Delta-G solvation = 20.033135 kcal Electronic energy + Delta-G solvation = -19088.147550 eV Core-core repulsion = 15984.665635 eV Total energy + Delta-G solvation = -3103.481915 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.083 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.26123 -39.79656 -39.04496 -36.79516 -34.90762 -32.17359 -31.32012 -30.03510 -28.92279 -27.15708 -25.78524 -24.71697 -22.91386 -21.86065 -21.23504 -19.82398 -19.12689 -18.13077 -17.73702 -17.35400 -16.80596 -16.48082 -16.09040 -15.65031 -15.24315 -14.87291 -14.76576 -14.48392 -14.31196 -13.96056 -13.59113 -13.28548 -13.11149 -12.93504 -12.71813 -12.67954 -12.35798 -12.24894 -12.19200 -11.57268 -11.17156 -11.05803 -10.91543 -10.39374 -10.29471 -9.52866 -9.37676 -8.53241 -8.16296 -5.99020 -0.34080 -0.25000 0.63003 1.13512 1.21543 1.41744 1.52259 1.61677 1.67954 2.28952 2.35621 2.86357 3.01705 3.29719 3.80158 3.87553 4.18373 4.34927 4.38041 4.47030 4.52941 4.65341 4.69575 4.80348 4.92255 5.06459 5.15323 5.29488 5.47834 5.69970 5.78921 5.81776 5.98197 6.21196 6.41166 6.50384 6.67611 6.87494 7.10641 7.13070 7.30092 8.49842 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.052327 B = 0.002653 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.965772 B =10551.040188 C =10685.696989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.289 6.289 3 C 0.210 3.790 4 N -0.552 5.552 5 C 0.086 3.914 6 C -0.267 4.267 7 C 0.222 3.778 8 N -0.748 5.748 9 C 0.113 3.887 10 C -0.163 4.163 11 C -0.197 4.197 12 C 0.035 3.965 13 C -0.506 4.506 14 H 0.067 0.933 15 C 0.032 3.968 16 N -0.840 5.840 17 Si 0.975 3.025 18 H -0.263 1.263 19 H -0.270 1.270 20 H -0.263 1.263 21 C -0.144 4.144 22 C -0.171 4.171 23 S 0.221 5.779 24 H 0.134 0.866 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.192 0.808 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.395 0.605 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.282 0.718 34 H 0.100 0.900 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.352 -15.844 -3.671 20.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.196 6.196 3 C -0.105 4.105 4 N -0.285 5.285 5 C -0.065 4.065 6 C -0.388 4.388 7 C 0.095 3.905 8 N -0.384 5.384 9 C 0.014 3.986 10 C -0.185 4.185 11 C -0.217 4.217 12 C 0.033 3.967 13 C -0.537 4.537 14 H 0.085 0.915 15 C -0.180 4.180 16 N -0.468 5.468 17 Si 0.797 3.203 18 H -0.188 1.188 19 H -0.195 1.195 20 H -0.187 1.187 21 C -0.164 4.164 22 C -0.194 4.194 23 S 0.473 5.527 24 H 0.152 0.848 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.209 0.791 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.229 0.771 31 H 0.133 0.867 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.033 -16.701 -4.086 20.985 hybrid contribution -0.205 1.503 0.307 1.548 sum -12.238 -15.197 -3.779 19.875 Atomic orbital electron populations 1.23284 0.74898 1.05570 1.02647 1.86322 1.24878 1.20563 1.87801 1.25539 0.96159 0.88932 0.99885 1.66726 1.39776 0.97560 1.24419 1.21551 0.88519 0.97863 0.98580 1.25698 0.98829 0.96736 1.17580 1.19242 0.92812 0.93505 0.84940 1.43945 1.42222 1.46439 1.05802 1.17374 0.93751 0.94713 0.92728 1.20082 1.01671 1.02302 0.94467 1.20750 1.00519 1.03005 0.97423 1.17829 0.93483 0.93441 0.91997 1.19561 1.18694 1.12291 1.03181 0.91496 1.26596 1.00343 0.97157 0.93901 1.69909 1.34805 1.28471 1.13639 0.85364 0.78235 0.77907 0.78802 1.18800 1.19490 1.18738 1.20880 0.99988 0.98651 0.96910 1.20262 1.00806 1.01318 0.96971 1.84104 0.98340 1.00561 1.69672 0.84825 0.92223 0.92081 0.79097 0.90689 0.91965 0.77065 0.86664 0.88648 0.90744 0.88213 0.87185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.63 113.37 1.21 1.64 16 2 O -0.29 -5.67 10.56 -88.50 -0.93 -6.60 16 3 C 0.21 4.66 8.13 130.59 1.06 5.72 16 4 N -0.55 -13.11 9.88 -318.85 -3.15 -16.26 16 5 C 0.09 1.92 11.24 83.56 0.94 2.86 16 6 C -0.27 -6.04 5.95 24.58 0.15 -5.89 16 7 C 0.22 5.81 5.42 85.63 0.46 6.27 16 8 N -0.75 -23.40 5.69 -342.70 -1.95 -25.35 16 9 C 0.11 4.63 6.67 38.67 0.26 4.89 16 10 C -0.16 -7.02 9.82 22.15 0.22 -6.80 16 11 C -0.20 -9.78 9.74 22.48 0.22 -9.56 16 12 C 0.04 1.95 5.57 -21.27 -0.12 1.83 16 13 C -0.51 -28.34 9.03 23.38 0.21 -28.13 16 14 H 0.07 3.64 7.91 -2.91 -0.02 3.62 16 15 C 0.03 1.68 5.13 85.22 0.44 2.12 16 16 N -0.84 -45.58 10.96 21.82 0.24 -45.34 16 17 Si 0.98 39.99 29.60 68.60 2.03 42.02 16 18 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 19 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 20 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 21 C -0.14 -7.65 8.64 22.47 0.19 -7.45 16 22 C -0.17 -7.74 9.23 22.15 0.20 -7.53 16 23 S 0.22 4.54 23.22 -56.49 -1.31 3.23 16 24 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.19 3.71 8.06 -2.91 -0.02 3.68 16 28 H 0.08 1.97 7.93 -2.38 -0.02 1.95 16 29 H 0.06 1.65 7.92 -2.39 -0.02 1.63 16 30 H 0.40 11.18 8.46 -92.70 -0.78 10.39 16 31 H 0.12 4.23 8.06 -2.91 -0.02 4.20 16 32 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 33 H 0.28 13.97 8.30 -92.71 -0.77 13.20 16 34 H 0.10 5.58 6.16 -2.91 -0.02 5.56 16 35 H 0.11 4.37 6.68 -2.91 -0.02 4.35 16 Total: -1.00 -62.93 318.38 0.70 -62.23 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.34 Total: 26.11 kcal Atomic # 6 Polarization: -45.48 SS G_CDS: 5.44 Total: -40.04 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -4.86 Total: -86.95 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.93 Total: -6.60 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -1.31 Total: 3.23 kcal Total: -62.93 0.70 -62.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386292926.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.264 kcal (2) G-P(sol) polarization free energy of solvation -62.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds