Wall clock time and date at job start Tue Mar 31 2020 05:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35951 * 116.99858 * 2 1 4 4 C 1.38271 * 121.64148 * 180.26127 * 3 2 1 5 5 C 1.35056 * 114.72418 * 180.19935 * 4 3 2 6 6 C 1.50696 * 127.19884 * 179.84106 * 5 4 3 7 7 N 1.46501 * 109.47343 * 89.71002 * 6 5 4 8 8 C 1.38854 * 120.00629 * 179.97438 * 7 6 5 9 9 C 1.39566 * 119.84597 * 179.97438 * 8 7 6 10 10 C 1.36338 * 120.16116 * 180.25508 * 9 8 7 11 11 C 1.40893 * 119.83636 * 359.50729 * 10 9 8 12 12 C 1.41133 * 120.15364 * 180.25178 * 11 10 9 13 13 H 1.07994 * 120.00344 * 24.83920 * 12 11 10 14 14 C 1.39866 * 119.99916 * 204.83980 * 12 11 10 15 15 N 1.30910 * 119.99864 * 17.95871 * 14 12 11 16 16 Si 1.86802 * 120.00165 * 197.96719 * 14 12 11 17 17 H 1.48492 * 109.47275 * 59.99742 * 16 14 12 18 18 H 1.48502 * 109.46983 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46916 * 299.99642 * 16 14 12 20 20 C 1.40883 * 119.68755 * 0.47142 * 11 10 9 21 21 C 1.36338 * 119.83541 * 359.77859 * 20 11 10 22 22 S 1.72026 * 105.60309 * 359.58448 * 5 4 3 23 23 N 1.30348 * 121.64363 * 359.97438 * 3 2 1 24 24 H 1.08997 * 109.47184 * 59.99697 * 1 2 3 25 25 H 1.09000 * 109.46640 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46746 * 299.99434 * 1 2 3 27 27 H 1.08004 * 122.63765 * 0.02642 * 4 3 2 28 28 H 1.09007 * 109.47283 * 329.71027 * 6 5 4 29 29 H 1.09002 * 109.47280 * 209.71191 * 6 5 4 30 30 H 0.97005 * 119.99646 * 0.02562 * 7 6 5 31 31 H 1.08002 * 119.91752 * 359.97438 * 9 8 7 32 32 H 1.07995 * 120.08351 * 179.74617 * 10 9 8 33 33 H 0.97001 * 120.00040 * 179.97438 * 15 14 12 34 34 H 1.08002 * 120.07962 * 179.76054 * 20 11 10 35 35 H 1.08005 * 119.92015 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4243 1.3233 -0.0054 5 6 3.8881 2.5917 -0.0004 6 6 5.3283 3.0352 -0.0008 7 7 5.7947 3.1786 -1.3822 8 6 7.0992 3.5809 -1.6364 9 6 7.5401 3.7159 -2.9537 10 6 8.8212 4.1054 -3.2107 11 6 9.6974 4.3819 -2.1426 12 6 11.0233 4.7907 -2.4010 13 1 11.2673 5.2727 -3.3362 14 6 12.0213 4.5717 -1.4460 15 7 11.8311 3.6993 -0.4887 16 14 13.6258 5.5242 -1.5363 17 1 13.3444 6.9786 -1.4340 18 1 14.5100 5.1116 -0.4168 19 1 14.2981 5.2398 -2.8294 20 6 9.2452 4.2439 -0.8155 21 6 7.9631 3.8486 -0.5734 22 16 2.4908 3.5952 -0.0007 23 7 1.3679 2.3244 -0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 4.0785 0.4639 -0.0102 28 1 5.9377 2.2917 0.5131 29 1 5.4138 3.9929 0.5128 30 1 5.1920 2.9933 -2.1193 31 1 6.8663 3.5069 -3.7714 32 1 9.1623 4.2055 -4.2305 33 1 12.5234 3.5471 0.1735 34 1 9.9127 4.4504 0.0080 35 1 7.6151 3.7419 0.4434 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399082349.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:11 Heat of formation + Delta-G solvation = 31.974936 kcal Electronic energy + Delta-G solvation = -19114.783272 eV Core-core repulsion = 16011.819193 eV Total energy + Delta-G solvation = -3102.964079 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.083 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.30765 -38.13177 -37.06115 -35.20464 -33.25303 -31.46164 -29.50626 -28.97935 -28.08765 -26.29929 -24.08883 -23.01125 -21.19905 -20.35366 -19.88421 -18.32235 -17.53715 -17.23654 -16.44178 -16.19887 -15.22144 -15.02419 -14.86763 -14.30058 -13.88823 -13.64148 -13.46194 -12.98989 -12.68817 -12.41846 -12.25902 -11.91258 -11.77704 -11.44016 -11.34880 -11.12348 -11.02603 -10.86056 -10.84882 -10.49388 -9.83162 -9.70221 -9.30801 -9.27501 -8.61351 -8.47855 -7.53458 -6.67904 -6.46097 -4.07232 0.47495 1.21772 1.57964 2.28228 2.90155 2.93071 3.06892 3.13178 3.16377 3.32831 4.03494 4.28034 4.49223 4.73002 4.85895 4.92927 4.96134 5.11842 5.26150 5.55109 5.73299 5.76161 5.85284 5.97572 6.22569 6.27030 6.83023 6.87431 6.89905 7.16350 7.32271 7.48488 7.64815 7.78656 8.11624 8.22487 8.42125 8.60215 8.74444 9.02922 9.10991 10.34295 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.043711 B = 0.002696 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.416048 B =10383.623483 C =10438.127078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.296 6.296 3 C 0.310 3.690 4 C -0.196 4.196 5 C -0.153 4.153 6 C 0.212 3.788 7 N -0.757 5.757 8 C 0.087 3.913 9 C -0.153 4.153 10 C -0.188 4.188 11 C 0.077 3.923 12 C -0.467 4.467 13 H 0.073 0.927 14 C 0.075 3.925 15 N -0.806 5.806 16 Si 0.904 3.096 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.268 1.268 20 C -0.126 4.126 21 C -0.162 4.162 22 S 0.302 5.698 23 N -0.537 5.537 24 H 0.059 0.941 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.166 0.834 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.387 0.613 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.277 0.723 34 H 0.119 0.881 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.576 -3.857 3.452 17.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.202 6.202 3 C 0.096 3.904 4 C -0.232 4.232 5 C -0.282 4.282 6 C 0.085 3.915 7 N -0.394 5.394 8 C -0.009 4.009 9 C -0.175 4.175 10 C -0.208 4.208 11 C 0.074 3.926 12 C -0.498 4.498 13 H 0.091 0.909 14 C -0.141 4.141 15 N -0.433 5.433 16 Si 0.729 3.271 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.192 1.192 20 C -0.146 4.146 21 C -0.184 4.184 22 S 0.451 5.549 23 N -0.378 5.378 24 H 0.078 0.922 25 H 0.119 0.881 26 H 0.077 0.923 27 H 0.183 0.817 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.220 0.780 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.747 -2.634 3.857 18.351 hybrid contribution 1.318 -1.316 -0.241 1.878 sum -16.429 -3.950 3.615 17.280 Atomic orbital electron populations 1.22952 0.76983 1.03433 1.02456 1.86289 1.22768 1.22832 1.88317 1.20133 0.90049 0.85073 0.95152 1.20288 0.92546 0.99283 1.11112 1.25557 1.03162 0.97189 1.02302 1.19390 0.84266 1.00591 0.87301 1.43762 1.11463 1.80697 1.03525 1.17272 0.84005 1.06155 0.93495 1.19796 0.96665 1.08005 0.92994 1.20554 0.94163 1.08421 0.97648 1.17508 0.92874 0.91262 0.90941 1.19349 0.92639 1.35333 1.02432 0.90916 1.25807 1.00219 0.93549 0.94489 1.69845 1.34664 1.25993 1.12816 0.86450 0.81133 0.81014 0.78529 1.19055 1.20572 1.19248 1.20935 0.93468 1.02514 0.97662 1.20085 0.95040 1.07972 0.95274 1.84068 0.89567 1.12425 1.68814 1.76444 1.26859 1.01459 1.32990 0.92232 0.88148 0.92257 0.81666 0.90740 0.91325 0.78041 0.89532 0.88961 0.91204 0.86299 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.47 101.05 1.06 1.36 16 2 O -0.30 -3.42 10.54 -19.59 -0.21 -3.62 16 3 C 0.31 3.89 7.42 -18.17 -0.13 3.76 16 4 C -0.20 -2.37 10.15 -40.70 -0.41 -2.78 16 5 C -0.15 -1.86 5.95 -35.44 -0.21 -2.08 16 6 C 0.21 2.92 5.46 -5.20 -0.03 2.89 16 7 N -0.76 -12.48 5.69 -59.67 -0.34 -12.82 16 8 C 0.09 1.81 6.67 -83.69 -0.56 1.25 16 9 C -0.15 -3.33 9.82 -39.77 -0.39 -3.72 16 10 C -0.19 -4.56 9.74 -39.26 -0.38 -4.94 16 11 C 0.08 2.04 5.57 -106.79 -0.60 1.45 16 12 C -0.47 -12.47 9.03 -37.88 -0.34 -12.82 16 13 H 0.07 1.88 7.91 -52.49 -0.41 1.46 16 14 C 0.07 1.90 5.13 -17.34 -0.09 1.81 16 15 N -0.81 -21.05 10.96 55.54 0.61 -20.44 16 16 Si 0.90 18.97 29.60 -169.99 -5.03 13.94 16 17 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 18 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 20 C -0.13 -3.21 8.64 -39.27 -0.34 -3.55 16 21 C -0.16 -3.62 9.23 -39.77 -0.37 -3.99 16 22 S 0.30 3.54 23.71 -107.50 -2.55 0.99 16 23 N -0.54 -6.92 11.14 28.92 0.32 -6.59 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.17 1.83 8.06 -52.48 -0.42 1.40 16 28 H 0.07 1.04 7.93 -51.93 -0.41 0.63 16 29 H 0.07 0.93 7.92 -51.93 -0.41 0.52 16 30 H 0.39 5.89 8.46 -40.82 -0.35 5.54 16 31 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 33 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 34 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 35 H 0.09 1.76 6.68 -52.48 -0.35 1.41 16 LS Contribution 318.18 15.07 4.79 4.79 Total: -1.00 -28.33 318.18 -9.12 -37.45 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -3.93 Total: 7.65 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -2.79 Total: -21.35 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.59 Total: -39.85 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: -0.21 Total: -3.62 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -2.55 Total: 0.99 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.33 -9.12 -37.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399082349.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.427 kcal (2) G-P(sol) polarization free energy of solvation -28.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds