Wall clock time and date at job start Tue Mar 31 2020 05:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35951 * 116.99858 * 2 1 4 4 C 1.38271 * 121.64148 * 180.26127 * 3 2 1 5 5 C 1.35056 * 114.72418 * 180.19935 * 4 3 2 6 6 C 1.50696 * 127.19884 * 179.84106 * 5 4 3 7 7 N 1.46501 * 109.47343 * 89.71002 * 6 5 4 8 8 C 1.38854 * 120.00629 * 179.97438 * 7 6 5 9 9 C 1.39566 * 119.84597 * 179.97438 * 8 7 6 10 10 C 1.36338 * 120.16116 * 180.25508 * 9 8 7 11 11 C 1.40893 * 119.83636 * 359.50729 * 10 9 8 12 12 C 1.41133 * 120.15364 * 180.25178 * 11 10 9 13 13 H 1.07994 * 120.00344 * 24.83920 * 12 11 10 14 14 C 1.39866 * 119.99916 * 204.83980 * 12 11 10 15 15 N 1.30910 * 119.99864 * 17.95871 * 14 12 11 16 16 Si 1.86802 * 120.00165 * 197.96719 * 14 12 11 17 17 H 1.48492 * 109.47275 * 59.99742 * 16 14 12 18 18 H 1.48502 * 109.46983 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46916 * 299.99642 * 16 14 12 20 20 C 1.40883 * 119.68755 * 0.47142 * 11 10 9 21 21 C 1.36338 * 119.83541 * 359.77859 * 20 11 10 22 22 S 1.72026 * 105.60309 * 359.58448 * 5 4 3 23 23 N 1.30348 * 121.64363 * 359.97438 * 3 2 1 24 24 H 1.08997 * 109.47184 * 59.99697 * 1 2 3 25 25 H 1.09000 * 109.46640 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46746 * 299.99434 * 1 2 3 27 27 H 1.08004 * 122.63765 * 0.02642 * 4 3 2 28 28 H 1.09007 * 109.47283 * 329.71027 * 6 5 4 29 29 H 1.09002 * 109.47280 * 209.71191 * 6 5 4 30 30 H 0.97005 * 119.99646 * 0.02562 * 7 6 5 31 31 H 1.08002 * 119.91752 * 359.97438 * 9 8 7 32 32 H 1.07995 * 120.08351 * 179.74617 * 10 9 8 33 33 H 0.97001 * 120.00040 * 179.97438 * 15 14 12 34 34 H 1.08002 * 120.07962 * 179.76054 * 20 11 10 35 35 H 1.08005 * 119.92015 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4243 1.3233 -0.0054 5 6 3.8881 2.5917 -0.0004 6 6 5.3283 3.0352 -0.0008 7 7 5.7947 3.1786 -1.3822 8 6 7.0992 3.5809 -1.6364 9 6 7.5401 3.7159 -2.9537 10 6 8.8212 4.1054 -3.2107 11 6 9.6974 4.3819 -2.1426 12 6 11.0233 4.7907 -2.4010 13 1 11.2673 5.2727 -3.3362 14 6 12.0213 4.5717 -1.4460 15 7 11.8311 3.6993 -0.4887 16 14 13.6258 5.5242 -1.5363 17 1 13.3444 6.9786 -1.4340 18 1 14.5100 5.1116 -0.4168 19 1 14.2981 5.2398 -2.8294 20 6 9.2452 4.2439 -0.8155 21 6 7.9631 3.8486 -0.5734 22 16 2.4908 3.5952 -0.0007 23 7 1.3679 2.3244 -0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 4.0785 0.4639 -0.0102 28 1 5.9377 2.2917 0.5131 29 1 5.4138 3.9929 0.5128 30 1 5.1920 2.9933 -2.1193 31 1 6.8663 3.5069 -3.7714 32 1 9.1623 4.2055 -4.2305 33 1 12.5234 3.5471 0.1735 34 1 9.9127 4.4504 0.0080 35 1 7.6151 3.7419 0.4434 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399082349.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:10 Heat of formation + Delta-G solvation = 14.183272 kcal Electronic energy + Delta-G solvation = -19115.554777 eV Core-core repulsion = 16011.819193 eV Total energy + Delta-G solvation = -3103.735584 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.083 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.19968 -39.78727 -38.09732 -36.67765 -34.93854 -32.73914 -31.32235 -30.48220 -29.04871 -27.55492 -25.73851 -24.08565 -22.88081 -21.88120 -21.10125 -19.28881 -19.12480 -18.48813 -17.77331 -17.23364 -16.80693 -16.50265 -15.78044 -15.63719 -15.37907 -14.75069 -14.62972 -14.39276 -14.27759 -13.96816 -13.58284 -13.40119 -13.09860 -12.88528 -12.71554 -12.65277 -12.29062 -12.12252 -12.09926 -11.78313 -11.57282 -11.18715 -11.05163 -10.71417 -10.32151 -9.38261 -9.37331 -8.53393 -8.18167 -5.99373 -0.49269 0.28578 0.64974 1.13531 1.21882 1.33552 1.42330 1.52629 1.61783 2.10883 2.29204 2.86260 2.94768 3.47558 3.87502 3.94473 4.13000 4.29936 4.32968 4.46410 4.52913 4.57291 4.65973 4.72733 4.79323 5.06681 5.08565 5.14487 5.29346 5.47745 5.69145 5.81370 5.97782 6.02464 6.21365 6.40618 6.65993 6.86269 7.09746 7.11264 7.27965 8.49707 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.043711 B = 0.002696 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.416048 B =10383.623483 C =10438.127078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.306 6.306 3 C 0.303 3.697 4 C -0.194 4.194 5 C -0.155 4.155 6 C 0.211 3.789 7 N -0.747 5.747 8 C 0.112 3.888 9 C -0.161 4.161 10 C -0.197 4.197 11 C 0.037 3.963 12 C -0.506 4.506 13 H 0.067 0.933 14 C 0.033 3.967 15 N -0.839 5.839 16 Si 0.975 3.025 17 H -0.263 1.263 18 H -0.270 1.270 19 H -0.263 1.263 20 C -0.145 4.145 21 C -0.170 4.170 22 S 0.321 5.679 23 N -0.551 5.551 24 H 0.057 0.943 25 H 0.130 0.870 26 H 0.058 0.942 27 H 0.175 0.825 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.397 0.603 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.282 0.718 34 H 0.100 0.900 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.016 -4.253 3.654 18.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.212 6.212 3 C 0.090 3.910 4 C -0.231 4.231 5 C -0.285 4.285 6 C 0.085 3.915 7 N -0.384 5.384 8 C 0.013 3.987 9 C -0.183 4.183 10 C -0.218 4.218 11 C 0.034 3.966 12 C -0.537 4.537 13 H 0.085 0.915 14 C -0.179 4.179 15 N -0.467 5.467 16 Si 0.796 3.204 17 H -0.188 1.188 18 H -0.195 1.195 19 H -0.188 1.188 20 C -0.165 4.165 21 C -0.192 4.192 22 S 0.471 5.529 23 N -0.392 5.392 24 H 0.076 0.924 25 H 0.148 0.852 26 H 0.077 0.923 27 H 0.192 0.808 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.231 0.769 31 H 0.134 0.866 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -19.244 -3.045 4.058 19.901 hybrid contribution 1.480 -1.278 -0.302 1.979 sum -17.764 -4.324 3.757 18.664 Atomic orbital electron populations 1.23196 0.75354 1.05389 1.02303 1.86285 1.24428 1.22392 1.88118 1.20266 0.90314 0.85373 0.95091 1.20417 0.92652 0.99567 1.10440 1.25302 1.02449 0.97497 1.03220 1.19444 0.85233 1.01226 0.85606 1.43772 1.09867 1.79362 1.05377 1.17324 0.85340 1.03215 0.92772 1.20081 0.96265 1.07479 0.94458 1.20748 0.95138 1.08445 0.97434 1.17833 0.93631 0.93105 0.92029 1.19569 0.93748 1.37193 1.03201 0.91496 1.26585 1.03445 0.94015 0.93896 1.69905 1.36031 1.27143 1.13647 0.85372 0.76850 0.79347 0.78792 1.18793 1.19500 1.18778 1.20883 0.94659 1.04070 0.96892 1.20275 0.94214 1.07657 0.97030 1.84005 0.88885 1.11706 1.68336 1.76406 1.27578 1.01937 1.33319 0.92442 0.85228 0.92296 0.80753 0.90342 0.90540 0.76892 0.86592 0.88651 0.90725 0.88172 0.86968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.47 113.37 1.19 1.65 16 2 O -0.31 -6.47 10.54 -93.00 -0.98 -7.45 16 3 C 0.30 7.01 7.42 84.92 0.63 7.64 16 4 C -0.19 -4.25 10.15 21.54 0.22 -4.03 16 5 C -0.16 -3.40 5.95 24.95 0.15 -3.25 16 6 C 0.21 5.25 5.46 85.63 0.47 5.71 16 7 N -0.75 -22.50 5.69 -342.70 -1.95 -24.46 16 8 C 0.11 4.46 6.67 38.67 0.26 4.72 16 9 C -0.16 -6.78 9.82 22.15 0.22 -6.56 16 10 C -0.20 -9.66 9.74 22.48 0.22 -9.44 16 11 C 0.04 2.01 5.57 -21.27 -0.12 1.89 16 12 C -0.51 -28.05 9.03 23.38 0.21 -27.84 16 13 H 0.07 3.61 7.91 -2.91 -0.02 3.58 16 14 C 0.03 1.71 5.13 85.22 0.44 2.14 16 15 N -0.84 -45.06 10.96 21.82 0.24 -44.82 16 16 Si 0.97 39.63 29.60 68.60 2.03 41.66 16 17 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 18 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 19 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 20 C -0.14 -7.56 8.64 22.47 0.19 -7.36 16 21 C -0.17 -7.46 9.23 22.15 0.20 -7.26 16 22 S 0.32 6.81 23.71 -56.49 -1.34 5.47 16 23 N -0.55 -13.14 11.14 -176.06 -1.96 -15.10 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.18 3.43 8.06 -2.91 -0.02 3.41 16 28 H 0.08 1.96 7.93 -2.38 -0.02 1.94 16 29 H 0.08 1.85 7.92 -2.39 -0.02 1.83 16 30 H 0.40 10.75 8.46 -92.70 -0.78 9.97 16 31 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 32 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 33 H 0.28 13.84 8.30 -92.71 -0.77 13.07 16 34 H 0.10 5.51 6.16 -2.91 -0.02 5.50 16 35 H 0.11 4.29 6.68 -2.91 -0.02 4.27 16 Total: -1.00 -61.68 318.18 0.65 -61.03 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.34 Total: 25.65 kcal Atomic # 6 Polarization: -46.26 SS G_CDS: 4.27 Total: -41.99 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -3.67 Total: -84.38 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.98 Total: -7.45 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Atomic # 16 Polarization: 6.81 SS G_CDS: -1.34 Total: 5.47 kcal Total: -61.68 0.65 -61.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399082349.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.212 kcal (2) G-P(sol) polarization free energy of solvation -61.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds