Wall clock time and date at job start Tue Mar 31 2020 08:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 N 1.46499 * 109.47260 * 180.27562 * 9 7 2 11 11 C 1.34775 * 120.00180 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00002 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00072 * 180.02562 * 11 10 9 14 14 H 1.09001 * 115.55396 * 34.41234 * 13 11 10 15 15 C 1.52999 * 117.49615 * 248.75039 * 13 11 10 16 16 C 1.52997 * 117.49941 * 180.08986 * 13 11 10 17 17 H 1.08997 * 117.50145 * 359.97438 * 16 13 11 18 18 C 1.50695 * 117.49836 * 214.97469 * 16 13 11 19 19 C 1.38234 * 120.00223 * 299.72856 * 18 16 13 20 20 C 1.38240 * 120.00172 * 179.76679 * 19 18 16 21 21 C 1.38239 * 119.99609 * 0.50147 * 20 19 18 22 22 N 1.48023 * 119.99897 * 179.72462 * 21 20 19 23 23 O 1.21791 * 120.00292 * 180.02562 * 22 21 20 24 24 O 1.21810 * 119.99574 * 0.02562 * 22 21 20 25 25 C 1.38229 * 120.00263 * 359.74936 * 21 20 19 26 26 C 1.38234 * 119.99851 * 0.02562 * 25 21 20 27 27 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 29 29 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 30 30 H 0.97002 * 119.99779 * 0.02562 * 10 9 7 31 31 H 1.08997 * 117.50439 * 359.97438 * 15 13 11 32 32 H 1.09004 * 117.50148 * 145.01765 * 15 13 11 33 33 H 1.07999 * 120.00309 * 359.97438 * 19 18 16 34 34 H 1.07998 * 120.00051 * 180.23507 * 20 19 18 35 35 H 1.07997 * 120.00417 * 179.97438 * 25 21 20 36 36 H 1.08007 * 119.99978 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 7 4.0000 -2.5751 -0.0105 11 6 5.3250 -2.8214 -0.0161 12 8 6.1131 -1.8996 -0.0167 13 6 5.8274 -4.2422 -0.0215 14 1 5.2172 -4.9546 -0.5768 15 6 6.5313 -4.7474 1.2395 16 6 7.3424 -4.4558 -0.0256 17 1 7.9757 -3.5688 -0.0247 18 6 7.8767 -5.6352 -0.7966 19 6 7.4873 -6.9172 -0.4563 20 6 7.9737 -7.9988 -1.1667 21 6 8.8576 -7.7990 -2.2107 22 7 9.3832 -8.9575 -2.9674 23 8 10.1622 -8.7816 -3.8869 24 8 9.0365 -10.0868 -2.6705 25 6 9.2510 -6.5174 -2.5476 26 6 8.7609 -5.4356 -1.8402 27 1 -0.4850 0.8400 -0.0004 28 1 3.8713 -0.6783 -0.8962 29 1 3.8786 -0.6819 0.8837 30 1 3.3696 -3.3124 -0.0097 31 1 6.6314 -4.0521 2.0729 32 1 6.3845 -5.7921 1.5136 33 1 6.8005 -7.0737 0.3623 34 1 7.6666 -9.0001 -0.9033 35 1 9.9418 -6.3613 -3.3629 36 1 9.0686 -4.4342 -2.1032 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412289436.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:45 Heat of formation + Delta-G solvation = -14.264374 kcal Electronic energy + Delta-G solvation = -21254.931583 eV Core-core repulsion = 17707.209545 eV Total energy + Delta-G solvation = -3547.722037 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -43.26232 -41.37840 -40.29650 -37.69988 -37.61724 -36.12631 -34.41902 -32.79093 -32.36724 -30.20160 -27.92772 -25.73341 -24.63787 -23.88112 -23.37479 -21.85135 -21.20311 -20.40354 -19.76384 -19.23487 -18.61750 -18.15581 -17.37682 -16.73248 -16.48789 -16.22315 -16.03015 -15.91010 -15.03011 -14.83300 -14.45352 -14.42052 -14.34870 -13.96890 -13.39989 -13.12216 -12.87502 -12.73681 -12.73285 -12.45115 -12.32622 -12.29650 -11.99084 -11.92057 -11.67763 -11.58167 -10.93795 -10.90479 -10.38875 -10.18651 -9.96520 -8.41526 -6.48878 -1.28870 -0.02261 0.22077 0.37217 1.31519 1.34328 1.45605 1.52598 2.12219 2.26306 2.40865 2.87452 2.94405 3.30116 3.38961 3.50828 3.60005 3.74487 3.89644 3.96782 4.10824 4.19892 4.30579 4.58899 4.70254 4.73524 4.78885 4.88863 4.91907 5.00404 5.04603 5.15291 5.24271 5.28371 5.46696 5.48764 6.06170 6.45405 6.52606 6.81098 7.13576 7.36635 8.73122 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.033859 B = 0.002536 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.763065 B =11039.563266 C =11122.817422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.026 3.974 3 Si 0.937 3.063 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.231 3.769 10 N -0.701 5.701 11 C 0.525 3.475 12 O -0.597 6.597 13 C -0.174 4.174 14 H 0.152 0.848 15 C -0.119 4.119 16 C -0.099 4.099 17 H 0.121 0.879 18 C 0.010 3.990 19 C -0.110 4.110 20 C -0.047 4.047 21 C -0.070 4.070 22 N 0.032 4.968 23 O -0.190 6.190 24 O -0.177 6.177 25 C -0.052 4.052 26 C -0.111 4.111 27 H 0.272 0.728 28 H 0.011 0.989 29 H 0.014 0.986 30 H 0.410 0.590 31 H 0.102 0.898 32 H 0.149 0.851 33 H 0.180 0.820 34 H 0.169 0.831 35 H 0.161 0.839 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.326 -15.460 0.524 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.175 4.175 3 Si 0.761 3.239 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.107 3.893 10 N -0.349 5.349 11 C 0.313 3.687 12 O -0.479 6.479 13 C -0.194 4.194 14 H 0.170 0.830 15 C -0.156 4.156 16 C -0.118 4.118 17 H 0.139 0.861 18 C 0.009 3.991 19 C -0.128 4.128 20 C -0.066 4.066 21 C -0.153 4.153 22 N 0.546 4.454 23 O -0.401 6.401 24 O -0.392 6.392 25 C -0.071 4.071 26 C -0.129 4.129 27 H 0.082 0.918 28 H 0.029 0.971 29 H 0.032 0.968 30 H 0.246 0.754 31 H 0.121 0.879 32 H 0.167 0.833 33 H 0.198 0.802 34 H 0.186 0.814 35 H 0.178 0.822 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 17.443 -14.136 0.860 22.469 hybrid contribution -0.242 0.434 -0.552 0.743 sum 17.201 -13.702 0.307 21.994 Atomic orbital electron populations 1.69982 1.07716 1.28637 1.50641 1.25613 0.95536 1.02717 0.93616 0.85860 0.79298 0.79342 0.79404 1.19113 1.19904 1.18293 1.21292 0.89988 0.94576 1.52637 0.92193 1.19106 0.93344 0.81101 0.95701 1.45979 1.06771 1.09712 1.72439 1.20356 0.82001 0.91006 0.75328 1.90635 1.56395 1.47892 1.52987 1.22346 0.95715 0.93958 1.07425 0.83028 1.23392 0.97636 1.04631 0.89918 1.21106 0.92008 0.97980 1.00711 0.86094 1.19651 0.92783 0.93753 0.92899 1.21434 1.00847 0.89578 1.00896 1.21290 0.91808 1.02840 0.90687 1.21379 1.07362 0.85586 1.01001 1.43980 0.98658 1.02908 0.99894 1.94527 1.30892 1.92312 1.22365 1.94515 1.62572 1.09922 1.72143 1.21186 0.97605 0.89076 0.99278 1.21271 0.97152 0.99737 0.94738 0.91846 0.97127 0.96800 0.75400 0.87947 0.83349 0.80249 0.81389 0.82168 0.82142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.51 13.96 21.45 0.30 -54.21 16 2 C 0.03 1.41 5.47 84.65 0.46 1.87 16 3 Si 0.94 42.84 27.46 68.60 1.88 44.72 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.26 -11.63 6.55 99.48 0.65 -10.98 16 7 C -0.55 -29.20 9.83 25.60 0.25 -28.95 16 8 H 0.06 3.36 7.84 -2.91 -0.02 3.33 16 9 C 0.23 10.82 4.50 85.63 0.38 11.21 16 10 N -0.70 -25.73 5.55 -466.79 -2.59 -28.32 16 11 C 0.53 17.22 7.61 87.66 0.67 17.89 16 12 O -0.60 -24.38 16.26 -3.01 -0.05 -24.43 16 13 C -0.17 -3.37 5.82 -11.54 -0.07 -3.44 16 14 H 0.15 2.19 8.14 -2.39 -0.02 2.17 16 15 C -0.12 -1.57 9.57 30.62 0.29 -1.28 16 16 C -0.10 -1.59 5.56 -11.52 -0.06 -1.65 16 17 H 0.12 2.38 7.67 -2.39 -0.02 2.37 16 18 C 0.01 0.12 5.61 -19.87 -0.11 0.01 16 19 C -0.11 -1.03 9.30 22.27 0.21 -0.83 16 20 C -0.05 -0.58 9.56 22.27 0.21 -0.37 16 21 C -0.07 -1.21 6.85 36.37 0.25 -0.96 16 22 N 0.03 0.72 4.45 -46.46 -0.21 0.51 16 23 O -0.19 -4.74 18.45 18.90 0.35 -4.39 16 24 O -0.18 -4.24 18.45 18.87 0.35 -3.89 16 25 C -0.05 -0.77 9.56 22.27 0.21 -0.56 16 26 C -0.11 -1.45 9.74 22.27 0.22 -1.23 16 27 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 28 H 0.01 0.53 7.56 -2.39 -0.02 0.51 16 29 H 0.01 0.69 7.21 -2.38 -0.02 0.67 16 30 H 0.41 12.98 8.32 -92.71 -0.77 12.21 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.15 0.80 6.17 -2.39 -0.01 0.78 16 33 H 0.18 0.59 6.02 -2.91 -0.02 0.58 16 34 H 0.17 1.57 7.61 -2.91 -0.02 1.55 16 35 H 0.16 2.05 7.61 -2.91 -0.02 2.03 16 36 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -71.38 322.97 3.26 -68.12 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.31 Total: 10.17 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 2.92 Total: -8.28 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -2.50 Total: -82.02 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: 0.65 Total: -32.72 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.88 Total: 44.72 kcal Total: -71.38 3.26 -68.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412289436.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.856 kcal (2) G-P(sol) polarization free energy of solvation -71.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.02 seconds