Wall clock time and date at job start Tue Mar 31 2020 07:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 S 1.81399 * 109.47162 * 119.99866 * 2 1 3 5 5 C 1.81396 * 102.99950 * 295.00178 * 4 2 1 6 6 C 1.50697 * 109.47223 * 180.02562 * 5 4 2 7 7 H 1.08011 * 119.99803 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00500 * 180.02562 * 6 5 4 9 9 N 1.31508 * 119.99489 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00164 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47486 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47320 * 120.00152 * 10 8 6 13 13 H 1.48499 * 109.47419 * 240.00059 * 10 8 6 14 14 C 1.50703 * 109.47292 * 240.00025 * 2 1 3 15 15 N 1.30737 * 126.36471 * 284.68821 * 14 2 1 16 16 N 1.28414 * 110.64774 * 179.81436 * 15 14 2 17 17 N 1.28954 * 110.20592 * 0.46054 * 16 15 14 18 18 N 1.35069 * 126.36167 * 104.99381 * 14 2 1 19 19 C 1.40261 * 127.38829 * 0.04540 * 18 14 2 20 20 C 1.38813 * 120.06653 * 324.71347 * 19 18 14 21 21 C 1.38121 * 119.93923 * 179.72834 * 20 19 18 22 22 C 1.38282 * 120.06068 * 0.57316 * 21 20 19 23 23 C 1.38268 * 120.12998 * 359.70325 * 22 21 20 24 24 C 1.38122 * 120.06445 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.46876 * 300.00226 * 1 2 3 26 26 H 1.09002 * 109.47067 * 60.00083 * 1 2 3 27 27 H 1.09000 * 109.46497 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47093 * 299.99838 * 5 4 2 29 29 H 1.09001 * 109.47243 * 60.00227 * 5 4 2 30 30 H 0.97002 * 120.00122 * 179.97438 * 9 8 6 31 31 H 1.08008 * 120.03133 * 0.02562 * 20 19 18 32 32 H 1.08002 * 119.97523 * 180.32202 * 21 20 19 33 33 H 1.08005 * 119.93284 * 179.72391 * 22 21 20 34 34 H 1.08003 * 119.96848 * 180.02562 * 23 22 21 35 35 H 1.08004 * 120.03322 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 1.5664 0.2153 2.8308 6 6 1.9984 -0.3688 4.1511 7 1 2.5585 -1.2920 4.1758 8 6 1.6778 0.2746 5.3277 9 7 0.9955 1.3984 5.2976 10 14 2.2127 -0.4499 6.9642 11 1 2.9624 -1.7095 6.7266 12 1 3.0866 0.5194 7.6727 13 1 1.0150 -0.7352 7.7944 14 6 2.0324 -0.7104 -1.2305 15 7 2.0391 -2.0022 -1.4313 16 7 2.5308 -2.2786 -2.5849 17 7 2.8782 -1.1953 -3.1922 18 7 2.5647 -0.1311 -2.3284 19 6 2.7631 1.2384 -2.5574 20 6 1.8490 2.1641 -2.0730 21 6 2.0500 3.5124 -2.2952 22 6 3.1542 3.9398 -3.0095 23 6 4.0633 3.0197 -3.4981 24 6 3.8711 1.6705 -3.2733 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 2.0001 1.2085 2.7141 29 1 0.4792 0.2881 2.8037 30 1 0.7696 1.8510 6.1253 31 1 0.9840 1.8306 -1.5188 32 1 1.3419 4.2335 -1.9142 33 1 3.3069 4.9943 -3.1859 34 1 4.9251 3.3564 -4.0554 35 1 4.5818 0.9523 -3.6549 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413012414.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:11 Heat of formation + Delta-G solvation = 141.103260 kcal Electronic energy + Delta-G solvation = -19898.179859 eV Core-core repulsion = 16832.240690 eV Total energy + Delta-G solvation = -3065.939169 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.20634 -39.69182 -35.58183 -34.30486 -33.23958 -31.42068 -31.03936 -30.22697 -28.58037 -25.28301 -24.41443 -23.33244 -23.11534 -22.06778 -21.08263 -18.61264 -17.03129 -16.84059 -16.60991 -15.83659 -15.39551 -15.01550 -14.81443 -14.63170 -13.93148 -13.85075 -13.44874 -13.29502 -13.05767 -12.56499 -12.44624 -12.40519 -11.99562 -11.79521 -11.78191 -11.54992 -11.23752 -10.95148 -10.87555 -10.76624 -10.32905 -9.90540 -9.62371 -9.45206 -9.06917 -8.91466 -8.68664 -6.85822 -6.27327 -4.31402 0.26607 0.88527 1.26966 1.59358 2.11246 2.53186 3.21776 3.25914 3.29546 3.35597 3.52593 3.88559 4.19137 4.30533 4.42588 4.54502 4.67322 4.78879 4.91024 4.95378 5.05111 5.10784 5.19587 5.33173 5.40036 5.50607 5.59076 5.79870 5.86954 5.93057 6.03391 6.13816 6.22917 6.54394 6.95632 6.98439 7.68161 7.91089 8.45962 8.70726 9.32474 10.83969 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.018227 B = 0.004298 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.841258 B = 6513.413935 C = 7436.869684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.008 4.008 3 H 0.107 0.893 4 S -0.235 6.235 5 C 0.082 3.918 6 C -0.512 4.512 7 H 0.069 0.931 8 C 0.068 3.932 9 N -0.892 5.892 10 Si 0.907 3.093 11 H -0.269 1.269 12 H -0.281 1.281 13 H -0.281 1.281 14 C 0.288 3.712 15 N -0.304 5.304 16 N -0.036 5.036 17 N -0.088 5.088 18 N -0.332 5.332 19 C 0.130 3.870 20 C -0.120 4.120 21 C -0.096 4.096 22 C -0.109 4.109 23 C -0.102 4.102 24 C -0.098 4.098 25 H 0.087 0.913 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.266 0.734 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.405 7.621 -16.325 18.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.140 4.140 3 H 0.125 0.875 4 S -0.008 6.008 5 C -0.065 4.065 6 C -0.552 4.552 7 H 0.087 0.913 8 C -0.136 4.136 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.193 1.193 12 H -0.207 1.207 13 H -0.206 1.206 14 C 0.011 3.989 15 N -0.154 5.154 16 N -0.031 5.031 17 N -0.072 5.072 18 N -0.123 5.123 19 C 0.038 3.962 20 C -0.140 4.140 21 C -0.115 4.115 22 C -0.127 4.127 23 C -0.120 4.120 24 C -0.118 4.118 25 H 0.106 0.894 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.177 5.536 -16.948 17.962 hybrid contribution -0.451 1.720 1.113 2.098 sum 1.726 7.256 -15.835 17.503 Atomic orbital electron populations 1.22155 0.90497 1.04797 1.02914 1.21768 0.99934 1.00762 0.91491 0.87457 1.87298 1.75323 1.40057 0.98171 1.21234 0.99150 0.94808 0.91283 1.20658 1.36542 1.09427 0.88558 0.91285 1.24929 0.94660 0.94752 0.99292 1.69945 1.38375 1.16555 1.28141 0.86288 0.78531 0.79335 0.82508 1.19329 1.20726 1.20637 1.25176 0.93638 0.90006 0.90053 1.74608 1.20317 1.10582 1.09889 1.78050 1.06990 1.17838 1.00173 1.82599 1.21638 0.88830 1.14085 1.48936 1.43537 1.07039 1.12802 1.17552 0.97410 0.77931 1.03267 1.21293 0.98801 0.93174 1.00772 1.21106 0.98129 0.94439 0.97798 1.21387 0.94102 1.00357 0.96861 1.21116 0.99684 0.91766 0.99482 1.21048 0.95644 0.97012 0.98098 0.89450 0.92622 0.89908 0.94495 0.93949 0.92476 0.84340 0.84244 0.84845 0.84557 0.84528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.76 37.16 0.33 -1.72 16 2 C -0.01 -0.13 2.33 -27.88 -0.06 -0.19 16 3 H 0.11 1.62 5.99 -51.92 -0.31 1.31 16 4 S -0.23 -4.98 20.91 -107.50 -2.25 -7.23 16 5 C 0.08 1.99 5.39 36.00 0.19 2.18 16 6 C -0.51 -13.88 9.13 -34.44 -0.31 -14.19 16 7 H 0.07 1.90 7.71 -52.48 -0.40 1.50 16 8 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 9 N -0.89 -24.75 13.29 55.43 0.74 -24.01 16 10 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 14 C 0.29 4.89 6.59 -155.19 -1.02 3.87 16 15 N -0.30 -5.76 11.96 32.75 0.39 -5.37 16 16 N -0.04 -0.66 13.39 60.35 0.81 0.15 16 17 N -0.09 -1.46 13.75 60.35 0.83 -0.63 16 18 N -0.33 -5.12 3.78 -7.97 -0.03 -5.15 16 19 C 0.13 1.64 6.35 -83.57 -0.53 1.11 16 20 C -0.12 -1.28 8.20 -39.41 -0.32 -1.60 16 21 C -0.10 -0.79 10.04 -39.61 -0.40 -1.19 16 22 C -0.11 -0.79 10.04 -39.55 -0.40 -1.18 16 23 C -0.10 -0.80 10.04 -39.61 -0.40 -1.20 16 24 C -0.10 -1.03 9.82 -39.41 -0.39 -1.42 16 25 H 0.09 1.27 6.92 -51.93 -0.36 0.91 16 26 H 0.05 0.63 6.97 -51.93 -0.36 0.27 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.04 0.92 8.14 -51.92 -0.42 0.50 16 29 H 0.04 1.04 7.14 -51.92 -0.37 0.67 16 30 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.14 1.43 4.91 -52.48 -0.26 1.18 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 34 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 316.54 15.07 4.77 4.77 Total: -1.00 -30.65 316.54 -6.91 -37.57 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -3.74 Total: -2.07 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -3.41 Total: -13.81 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 2.74 Total: -35.01 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -4.98 SS G_CDS: -2.25 Total: -7.23 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.65 -6.91 -37.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413012414.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.670 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds