Wall clock time and date at job start Tue Mar 31 2020 07:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 S 1.81399 * 109.47162 * 119.99866 * 2 1 3 5 5 C 1.81396 * 102.99950 * 295.00178 * 4 2 1 6 6 C 1.50697 * 109.47223 * 180.02562 * 5 4 2 7 7 H 1.08011 * 119.99803 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00500 * 180.02562 * 6 5 4 9 9 N 1.31508 * 119.99489 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00164 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47486 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47320 * 120.00152 * 10 8 6 13 13 H 1.48499 * 109.47419 * 240.00059 * 10 8 6 14 14 C 1.50703 * 109.47292 * 240.00025 * 2 1 3 15 15 N 1.30737 * 126.36471 * 284.68821 * 14 2 1 16 16 N 1.28414 * 110.64774 * 179.81436 * 15 14 2 17 17 N 1.28954 * 110.20592 * 0.46054 * 16 15 14 18 18 N 1.35069 * 126.36167 * 104.99381 * 14 2 1 19 19 C 1.40261 * 127.38829 * 0.04540 * 18 14 2 20 20 C 1.38813 * 120.06653 * 324.71347 * 19 18 14 21 21 C 1.38121 * 119.93923 * 179.72834 * 20 19 18 22 22 C 1.38282 * 120.06068 * 0.57316 * 21 20 19 23 23 C 1.38268 * 120.12998 * 359.70325 * 22 21 20 24 24 C 1.38122 * 120.06445 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.46876 * 300.00226 * 1 2 3 26 26 H 1.09002 * 109.47067 * 60.00083 * 1 2 3 27 27 H 1.09000 * 109.46497 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47093 * 299.99838 * 5 4 2 29 29 H 1.09001 * 109.47243 * 60.00227 * 5 4 2 30 30 H 0.97002 * 120.00122 * 179.97438 * 9 8 6 31 31 H 1.08008 * 120.03133 * 0.02562 * 20 19 18 32 32 H 1.08002 * 119.97523 * 180.32202 * 21 20 19 33 33 H 1.08005 * 119.93284 * 179.72391 * 22 21 20 34 34 H 1.08003 * 119.96848 * 180.02562 * 23 22 21 35 35 H 1.08004 * 120.03322 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 1.5664 0.2153 2.8308 6 6 1.9984 -0.3688 4.1511 7 1 2.5585 -1.2920 4.1758 8 6 1.6778 0.2746 5.3277 9 7 0.9955 1.3984 5.2976 10 14 2.2127 -0.4499 6.9642 11 1 2.9624 -1.7095 6.7266 12 1 3.0866 0.5194 7.6727 13 1 1.0150 -0.7352 7.7944 14 6 2.0324 -0.7104 -1.2305 15 7 2.0391 -2.0022 -1.4313 16 7 2.5308 -2.2786 -2.5849 17 7 2.8782 -1.1953 -3.1922 18 7 2.5647 -0.1311 -2.3284 19 6 2.7631 1.2384 -2.5574 20 6 1.8490 2.1641 -2.0730 21 6 2.0500 3.5124 -2.2952 22 6 3.1542 3.9398 -3.0095 23 6 4.0633 3.0197 -3.4981 24 6 3.8711 1.6705 -3.2733 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 2.0001 1.2085 2.7141 29 1 0.4792 0.2881 2.8037 30 1 0.7696 1.8510 6.1253 31 1 0.9840 1.8306 -1.5188 32 1 1.3419 4.2335 -1.9142 33 1 3.3069 4.9943 -3.1859 34 1 4.9251 3.3564 -4.0554 35 1 4.5818 0.9523 -3.6549 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413012414.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:06 Heat of formation + Delta-G solvation = 123.957446 kcal Electronic energy + Delta-G solvation = -19898.923358 eV Core-core repulsion = 16832.240690 eV Total energy + Delta-G solvation = -3066.682667 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 8.06 seconds Orbital eigenvalues (eV) -44.50110 -40.47367 -36.72471 -35.52000 -35.27992 -32.37812 -32.10796 -31.14438 -30.56557 -26.44745 -25.58102 -25.21601 -24.12222 -23.01981 -22.28495 -19.62060 -18.76342 -18.00895 -17.76795 -17.42809 -16.52032 -16.41343 -16.08127 -15.49337 -15.24013 -14.90473 -14.67335 -14.50516 -14.36235 -14.27374 -14.01759 -13.76718 -13.32244 -12.93136 -12.75572 -12.71573 -12.66247 -12.57022 -12.20462 -12.06651 -11.95097 -11.66102 -11.35739 -10.72383 -10.69318 -10.14495 -9.85363 -8.58868 -8.32303 -6.43572 -0.80611 0.18652 0.23445 0.37698 0.73900 1.14102 1.41159 1.43251 1.56166 1.83873 2.38544 2.51985 2.53988 3.03440 3.07662 3.47626 3.67789 3.69716 3.86214 3.92625 4.05670 4.12536 4.26557 4.36020 4.40617 4.49633 4.60068 4.87441 4.95525 4.96046 5.09810 5.11155 5.16957 5.33389 5.38469 5.59396 5.80298 5.90350 6.62416 7.12833 7.24120 8.79442 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.018227 B = 0.004298 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.841258 B = 6513.413935 C = 7436.869684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.013 3.987 3 H 0.124 0.876 4 S -0.266 6.266 5 C 0.094 3.906 6 C -0.537 4.537 7 H 0.057 0.943 8 C 0.024 3.976 9 N -0.918 5.918 10 Si 0.969 3.031 11 H -0.271 1.271 12 H -0.273 1.273 13 H -0.272 1.272 14 C 0.278 3.722 15 N -0.331 5.331 16 N -0.056 5.056 17 N -0.088 5.088 18 N -0.315 5.315 19 C 0.086 3.914 20 C -0.130 4.130 21 C -0.096 4.096 22 C -0.095 4.095 23 C -0.097 4.097 24 C -0.109 4.109 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.024 0.976 29 H 0.034 0.966 30 H 0.271 0.729 31 H 0.138 0.862 32 H 0.166 0.834 33 H 0.170 0.830 34 H 0.167 0.833 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.659 9.940 -17.002 19.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 H 0.142 0.858 4 S -0.039 6.039 5 C -0.053 4.053 6 C -0.576 4.576 7 H 0.075 0.925 8 C -0.178 4.178 9 N -0.557 5.557 10 Si 0.793 3.207 11 H -0.195 1.195 12 H -0.198 1.198 13 H -0.197 1.197 14 C 0.001 3.999 15 N -0.182 5.182 16 N -0.050 5.050 17 N -0.072 5.072 18 N -0.106 5.106 19 C -0.004 4.004 20 C -0.150 4.150 21 C -0.114 4.114 22 C -0.113 4.113 23 C -0.115 4.115 24 C -0.129 4.129 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.091 0.909 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.155 0.845 32 H 0.184 0.816 33 H 0.188 0.812 34 H 0.185 0.815 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.433 7.869 -17.634 19.463 hybrid contribution -0.488 1.182 1.140 1.713 sum 1.945 9.051 -16.494 18.914 Atomic orbital electron populations 1.22123 0.88734 1.04683 1.04383 1.21743 1.01206 1.00457 0.88506 0.85844 1.87243 1.75987 1.40578 1.00102 1.20891 0.98297 0.94407 0.91735 1.20940 1.36942 1.09372 0.90377 0.92480 1.25722 0.94476 0.95036 1.02537 1.70014 1.38932 1.17426 1.29299 0.85335 0.78396 0.78551 0.78427 1.19496 1.19786 1.19739 1.25032 0.94576 0.89695 0.90608 1.74512 1.21211 1.11947 1.10497 1.78019 1.08105 1.18571 1.00347 1.82500 1.21345 0.89026 1.14331 1.49036 1.41813 1.07996 1.11724 1.18033 0.99586 0.76556 1.06266 1.21448 0.98573 0.94051 1.00967 1.21507 0.98976 0.93670 0.97297 1.21881 0.92701 1.02068 0.94620 1.21512 1.00662 0.90477 0.98884 1.21217 0.95138 0.98454 0.98076 0.89752 0.89205 0.90878 0.95786 0.94827 0.91991 0.84456 0.81607 0.81235 0.81539 0.85009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 8.76 71.98 0.63 -3.26 16 2 C 0.01 0.41 2.33 29.85 0.07 0.48 16 3 H 0.12 3.65 5.99 -2.39 -0.01 3.63 16 4 S -0.27 -11.51 20.91 -56.49 -1.18 -12.70 16 5 C 0.09 4.65 5.39 71.24 0.38 5.04 16 6 C -0.54 -29.63 9.13 25.60 0.23 -29.40 16 7 H 0.06 3.22 7.71 -2.90 -0.02 3.20 16 8 C 0.02 1.29 5.46 84.66 0.46 1.75 16 9 N -0.92 -50.98 13.29 21.45 0.28 -50.70 16 10 Si 0.97 42.59 29.54 68.60 2.03 44.61 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 13 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 14 C 0.28 9.48 6.59 138.05 0.91 10.39 16 15 N -0.33 -12.80 11.96 -50.29 -0.60 -13.40 16 16 N -0.06 -2.10 13.39 37.02 0.50 -1.61 16 17 N -0.09 -2.96 13.75 37.02 0.51 -2.46 16 18 N -0.31 -9.66 3.78 -179.12 -0.68 -10.34 16 19 C 0.09 2.08 6.35 38.07 0.24 2.32 16 20 C -0.13 -2.52 8.20 22.38 0.18 -2.34 16 21 C -0.10 -1.25 10.04 22.25 0.22 -1.03 16 22 C -0.09 -0.96 10.04 22.29 0.22 -0.73 16 23 C -0.10 -1.20 10.04 22.25 0.22 -0.97 16 24 C -0.11 -2.13 9.82 22.38 0.22 -1.91 16 25 H 0.08 2.42 6.92 -2.39 -0.02 2.40 16 26 H 0.09 1.90 6.97 -2.39 -0.02 1.88 16 27 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.03 1.69 7.14 -2.39 -0.02 1.67 16 30 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 31 H 0.14 2.59 4.91 -2.91 -0.01 2.58 16 32 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 33 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 34 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 35 H 0.13 2.62 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -67.65 316.54 5.98 -61.68 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: 1.12 Total: 4.55 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 4.01 Total: -19.65 kcal Atomic # 7 Polarization: -78.51 SS G_CDS: 0.01 Total: -78.50 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: -11.51 SS G_CDS: -1.18 Total: -12.70 kcal Total: -67.65 5.98 -61.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413012414.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.633 kcal (2) G-P(sol) polarization free energy of solvation -67.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.06 seconds