Wall clock time and date at job start Tue Mar 31 2020 07:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 120.00127 * 2 1 4 4 N 1.46897 * 109.47635 * 124.55872 * 3 2 1 5 5 C 1.46894 * 111.00313 * 199.63095 * 4 3 2 6 6 C 1.50694 * 109.47172 * 66.04944 * 5 4 3 7 7 H 1.07998 * 120.00081 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99933 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00355 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00222 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46906 * 59.99462 * 10 8 6 12 12 H 1.48500 * 109.47561 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47171 * 300.00299 * 10 8 6 14 14 C 1.46905 * 110.99677 * 75.67503 * 4 3 2 15 15 C 1.50700 * 109.47088 * 198.85885 * 14 4 3 16 16 C 1.38365 * 119.85490 * 255.02820 * 15 14 4 17 17 C 1.37928 * 120.16636 * 179.97438 * 16 15 14 18 18 C 1.39658 * 119.87139 * 0.02562 * 17 16 15 19 19 C 1.43207 * 120.14021 * 180.02562 * 18 17 16 20 20 N 9.09641 * 130.72565 * 97.99893 * 2 1 3 21 21 C 1.39596 * 119.71377 * 359.73314 * 18 17 16 22 22 C 1.38088 * 119.82946 * 0.49699 * 21 18 17 23 23 Cl 1.73595 * 119.93584 * 179.79359 * 22 21 18 24 24 H 1.08003 * 120.00129 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.99995 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99995 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46860 * 4.55988 * 3 2 1 28 28 H 1.09004 * 109.47321 * 244.56404 * 3 2 1 29 29 H 1.09003 * 109.47013 * 186.05243 * 5 4 3 30 30 H 1.09001 * 109.47219 * 306.04362 * 5 4 3 31 31 H 0.97000 * 120.00421 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.47194 * 78.85865 * 14 4 3 33 33 H 1.09001 * 109.47104 * 318.85860 * 14 4 3 34 34 H 1.08001 * 119.91338 * 0.02562 * 16 15 14 35 35 H 1.07998 * 120.06632 * 180.02562 * 17 16 15 36 36 H 1.08000 * 120.08304 * 180.29523 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9887 1.3364 1.1405 5 6 3.3891 2.7141 1.4560 6 6 2.1908 3.4859 1.9453 7 1 1.2280 3.0016 2.0145 8 6 2.3234 4.8107 2.3035 9 7 3.4958 5.4007 2.2187 10 14 0.8380 5.7677 2.9093 11 1 0.2950 5.1185 4.1297 12 1 1.2427 7.1604 3.2283 13 1 -0.2048 5.7845 1.8521 14 6 4.1636 0.4913 0.8886 15 6 4.8418 0.1713 2.1958 16 6 6.0238 0.8071 2.5322 17 6 6.6497 0.5195 3.7272 18 6 6.0884 -0.4163 4.5988 19 6 6.7331 -0.7189 5.8413 20 7 7.2448 -0.9593 6.8266 21 6 4.8931 -1.0509 4.2565 22 6 4.2793 -0.7573 3.0549 23 17 2.7956 -1.5489 2.6239 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3580 2.1319 0.0817 28 1 2.6274 1.3991 -0.9281 29 1 4.1546 2.7014 2.2318 30 1 3.7875 3.1908 0.5604 31 1 3.5890 6.3328 2.4704 32 1 4.8597 1.0212 0.2383 33 1 3.8488 -0.4342 0.4065 34 1 6.4569 1.5309 1.8578 35 1 7.5720 1.0170 3.9884 36 1 4.4514 -1.7720 4.9282 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428855680.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:51 Heat of formation + Delta-G solvation = 72.133588 kcal Electronic energy + Delta-G solvation = -20120.190752 eV Core-core repulsion = 17016.924376 eV Total energy + Delta-G solvation = -3103.266376 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 3.62 seconds Orbital eigenvalues (eV) -39.67208 -37.27273 -36.45184 -35.99267 -33.30481 -32.73967 -31.25575 -30.80727 -27.60516 -26.36919 -24.14395 -22.81248 -22.37804 -20.46656 -19.16961 -18.99199 -16.52226 -15.91234 -15.86506 -15.02750 -14.85247 -14.67189 -14.33201 -13.92888 -13.79359 -13.75095 -13.16989 -12.91599 -12.75873 -12.49373 -12.26796 -11.92428 -11.62293 -11.47313 -11.26103 -11.20126 -11.01205 -10.82557 -10.71535 -10.45892 -10.24466 -9.93979 -9.28013 -8.90063 -8.88145 -8.55240 -8.46044 -7.33403 -6.06131 -4.06535 0.72492 1.23398 2.27759 2.68434 2.74319 2.91161 3.31914 3.36493 3.39710 3.77995 3.86934 4.41047 4.74667 4.83249 4.97304 5.12999 5.29960 5.33412 5.45542 5.52816 5.63705 5.70924 5.82801 5.90548 6.04193 6.12023 6.22064 6.28226 6.45168 6.53949 6.67191 7.05095 7.18199 7.25399 7.29592 7.42581 7.75823 8.00759 8.12490 8.47403 9.00687 9.57744 11.04610 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.006095 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.269507 B = 4592.665175 C = 6017.814684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 C 0.085 3.915 4 N -0.520 5.520 5 C 0.192 3.808 6 C -0.506 4.506 7 H 0.063 0.937 8 C 0.058 3.942 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.080 3.920 15 C -0.019 4.019 16 C -0.097 4.097 17 C -0.065 4.065 18 C -0.032 4.032 19 C 0.265 3.735 20 N -0.426 5.426 21 C -0.068 4.068 22 C -0.015 4.015 23 Cl -0.048 7.048 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.030 0.970 29 H 0.035 0.965 30 H -0.009 1.009 31 H 0.261 0.739 32 H 0.043 0.957 33 H 0.079 0.921 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.667 -12.366 -3.244 13.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.145 4.145 3 C -0.043 4.043 4 N -0.244 5.244 5 C 0.067 3.933 6 C -0.545 4.545 7 H 0.081 0.919 8 C -0.143 4.143 9 N -0.538 5.538 10 Si 0.722 3.278 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.048 4.048 15 C -0.021 4.021 16 C -0.116 4.116 17 C -0.086 4.086 18 C -0.035 4.035 19 C -0.050 4.050 20 N -0.101 5.101 21 C -0.089 4.089 22 C -0.043 4.043 23 Cl -0.019 7.019 24 H 0.105 0.895 25 H 0.113 0.887 26 H 0.116 0.884 27 H 0.112 0.888 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.009 0.991 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.171 -12.800 -1.318 13.253 hybrid contribution -0.684 1.058 -0.586 1.390 sum 2.487 -11.742 -1.903 12.153 Atomic orbital electron populations 1.23666 0.96018 1.01085 1.03305 1.22947 0.95784 0.98373 0.97377 1.21185 0.95998 0.95731 0.91348 1.62120 1.11974 1.13711 1.36558 1.19808 0.96955 0.81151 0.95386 1.21090 0.95438 0.94741 1.43201 0.91855 1.24939 0.95898 0.97674 0.95832 1.69929 1.22872 1.12224 1.48744 0.86617 0.82910 0.78808 0.79427 1.20187 1.21420 1.20287 1.21146 0.93339 0.98812 0.91465 1.20050 0.93347 0.92228 0.96459 1.21039 0.94708 0.98970 0.96839 1.21176 0.99652 0.94853 0.92916 1.15733 0.96059 1.01967 0.89784 1.25607 0.93315 0.93379 0.92733 1.81228 1.09056 1.08785 1.11055 1.20925 0.93431 0.99278 0.95309 1.20468 0.90058 0.98383 0.95351 1.98373 1.32442 1.78345 1.92750 0.89507 0.88659 0.88434 0.88800 0.95234 0.94687 0.99116 0.92902 0.93926 0.90228 0.84077 0.84643 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.89 14.32 29.02 0.42 -2.48 16 2 C -0.13 -1.90 9.03 -36.02 -0.33 -2.22 16 3 C 0.08 1.49 5.24 -4.98 -0.03 1.47 16 4 N -0.52 -9.86 4.23 -238.97 -1.01 -10.87 16 5 C 0.19 4.51 4.55 -4.98 -0.02 4.49 16 6 C -0.51 -13.37 8.23 -34.44 -0.28 -13.65 16 7 H 0.06 1.68 7.31 -52.49 -0.38 1.30 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -25.46 13.29 55.43 0.74 -24.73 16 10 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 C 0.08 1.24 4.26 -4.97 -0.02 1.22 16 15 C -0.02 -0.27 4.80 -104.50 -0.50 -0.77 16 16 C -0.10 -1.28 8.94 -39.65 -0.35 -1.63 16 17 C -0.07 -0.78 9.76 -39.17 -0.38 -1.16 16 18 C -0.03 -0.39 5.73 -106.93 -0.61 -1.00 16 19 C 0.26 3.51 15.33 -22.47 -0.34 3.17 16 20 N -0.43 -6.41 18.54 41.84 0.78 -5.63 16 21 C -0.07 -0.85 9.54 -39.13 -0.37 -1.23 16 22 C -0.02 -0.21 6.31 -39.56 -0.25 -0.46 16 23 Cl -0.05 -0.67 26.81 -51.86 -1.39 -2.06 16 24 H 0.09 1.07 8.06 -52.48 -0.42 0.65 16 25 H 0.10 1.40 7.84 -52.49 -0.41 0.99 16 26 H 0.10 1.35 6.87 -52.49 -0.36 0.99 16 27 H 0.09 1.87 6.23 -51.93 -0.32 1.55 16 28 H 0.03 0.49 8.00 -51.93 -0.42 0.08 16 29 H 0.04 0.87 6.82 -51.93 -0.35 0.52 16 30 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.04 0.64 7.81 -51.93 -0.41 0.23 16 33 H 0.08 1.10 6.24 -51.93 -0.32 0.77 16 34 H 0.14 1.73 7.99 -52.49 -0.42 1.31 16 35 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 330.94 15.07 4.99 4.99 Total: -1.00 -28.75 330.94 -8.32 -37.07 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -4.22 Total: -2.07 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -3.18 Total: -12.80 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.50 Total: -41.23 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.39 Total: -2.06 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.75 -8.32 -37.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428855680.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.208 kcal (2) G-P(sol) polarization free energy of solvation -28.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.62 seconds