Wall clock time and date at job start Tue Mar 31 2020 07:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 120.00127 * 2 1 4 4 N 1.46897 * 109.47635 * 124.55872 * 3 2 1 5 5 C 1.46894 * 111.00313 * 199.63095 * 4 3 2 6 6 C 1.50694 * 109.47172 * 66.04944 * 5 4 3 7 7 H 1.07998 * 120.00081 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99933 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00355 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00222 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46906 * 59.99462 * 10 8 6 12 12 H 1.48500 * 109.47561 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47171 * 300.00299 * 10 8 6 14 14 C 1.46905 * 110.99677 * 75.67503 * 4 3 2 15 15 C 1.50700 * 109.47088 * 198.85885 * 14 4 3 16 16 C 1.38365 * 119.85490 * 255.02820 * 15 14 4 17 17 C 1.37928 * 120.16636 * 179.97438 * 16 15 14 18 18 C 1.39658 * 119.87139 * 0.02562 * 17 16 15 19 19 C 1.43207 * 120.14021 * 180.02562 * 18 17 16 20 20 N 9.09641 * 130.72565 * 97.99893 * 2 1 3 21 21 C 1.39596 * 119.71377 * 359.73314 * 18 17 16 22 22 C 1.38088 * 119.82946 * 0.49699 * 21 18 17 23 23 Cl 1.73595 * 119.93584 * 179.79359 * 22 21 18 24 24 H 1.08003 * 120.00129 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.99995 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99995 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46860 * 4.55988 * 3 2 1 28 28 H 1.09004 * 109.47321 * 244.56404 * 3 2 1 29 29 H 1.09003 * 109.47013 * 186.05243 * 5 4 3 30 30 H 1.09001 * 109.47219 * 306.04362 * 5 4 3 31 31 H 0.97000 * 120.00421 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.47194 * 78.85865 * 14 4 3 33 33 H 1.09001 * 109.47104 * 318.85860 * 14 4 3 34 34 H 1.08001 * 119.91338 * 0.02562 * 16 15 14 35 35 H 1.07998 * 120.06632 * 180.02562 * 17 16 15 36 36 H 1.08000 * 120.08304 * 180.29523 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9887 1.3364 1.1405 5 6 3.3891 2.7141 1.4560 6 6 2.1908 3.4859 1.9453 7 1 1.2280 3.0016 2.0145 8 6 2.3234 4.8107 2.3035 9 7 3.4958 5.4007 2.2187 10 14 0.8380 5.7677 2.9093 11 1 0.2950 5.1185 4.1297 12 1 1.2427 7.1604 3.2283 13 1 -0.2048 5.7845 1.8521 14 6 4.1636 0.4913 0.8886 15 6 4.8418 0.1713 2.1958 16 6 6.0238 0.8071 2.5322 17 6 6.6497 0.5195 3.7272 18 6 6.0884 -0.4163 4.5988 19 6 6.7331 -0.7189 5.8413 20 7 7.2448 -0.9593 6.8266 21 6 4.8931 -1.0509 4.2565 22 6 4.2793 -0.7573 3.0549 23 17 2.7956 -1.5489 2.6239 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3580 2.1319 0.0817 28 1 2.6274 1.3991 -0.9281 29 1 4.1546 2.7014 2.2318 30 1 3.7875 3.1908 0.5604 31 1 3.5890 6.3328 2.4704 32 1 4.8597 1.0212 0.2383 33 1 3.8488 -0.4342 0.4065 34 1 6.4569 1.5309 1.8578 35 1 7.5720 1.0170 3.9884 36 1 4.4514 -1.7720 4.9282 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428855680.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:49 Heat of formation + Delta-G solvation = 57.615116 kcal Electronic energy + Delta-G solvation = -20120.820320 eV Core-core repulsion = 17016.924376 eV Total energy + Delta-G solvation = -3103.895944 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = -4.40 seconds Orbital eigenvalues (eV) -40.75149 -38.63277 -37.61591 -37.07978 -34.88740 -34.30311 -32.56084 -31.84329 -29.32359 -27.68081 -25.78325 -23.86023 -23.72443 -21.95734 -20.40913 -20.05151 -18.46178 -17.17535 -17.02354 -16.48472 -16.23314 -15.96602 -15.58717 -15.28006 -15.10848 -14.78120 -14.45490 -14.10459 -14.00310 -13.93270 -13.75300 -13.35064 -13.11424 -12.85230 -12.61515 -12.58349 -12.41546 -12.24924 -12.18838 -11.98033 -11.55906 -11.53283 -11.18874 -10.53031 -10.13762 -9.92365 -9.62475 -8.88263 -8.13373 -6.19635 -0.33202 0.21946 1.21174 1.43734 1.45288 1.52264 1.55821 1.62191 1.83141 2.44763 2.72614 2.81252 3.20548 3.53403 3.77398 3.86535 4.01454 4.20842 4.26869 4.43242 4.47988 4.55770 4.63872 4.80897 4.83411 5.02110 5.02893 5.11561 5.19000 5.33813 5.38656 5.43520 5.64853 5.73795 5.85789 6.09705 6.15738 6.36659 6.43128 6.70817 6.96096 7.48706 8.96638 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.006095 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.269507 B = 4592.665175 C = 6017.814684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 C 0.086 3.914 4 N -0.523 5.523 5 C 0.209 3.791 6 C -0.515 4.515 7 H 0.057 0.943 8 C 0.009 3.991 9 N -0.929 5.929 10 Si 0.952 3.048 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.270 1.270 14 C 0.082 3.918 15 C -0.035 4.035 16 C -0.105 4.105 17 C -0.057 4.057 18 C -0.030 4.030 19 C 0.285 3.715 20 N -0.455 5.455 21 C -0.063 4.063 22 C -0.026 4.026 23 Cl -0.049 7.049 24 H 0.112 0.888 25 H 0.086 0.914 26 H 0.114 0.886 27 H 0.064 0.936 28 H 0.036 0.964 29 H 0.019 0.981 30 H -0.035 1.035 31 H 0.262 0.738 32 H 0.045 0.955 33 H 0.098 0.902 34 H 0.146 0.854 35 H 0.159 0.841 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.151 -13.425 -3.044 13.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.151 4.151 3 C -0.041 4.041 4 N -0.247 5.247 5 C 0.083 3.917 6 C -0.553 4.553 7 H 0.076 0.924 8 C -0.189 4.189 9 N -0.570 5.570 10 Si 0.778 3.222 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.195 1.195 14 C -0.046 4.046 15 C -0.038 4.038 16 C -0.124 4.124 17 C -0.077 4.077 18 C -0.034 4.034 19 C -0.029 4.029 20 N -0.131 5.131 21 C -0.084 4.084 22 C -0.053 4.053 23 Cl -0.020 7.020 24 H 0.130 0.870 25 H 0.105 0.895 26 H 0.132 0.868 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.037 0.963 30 H -0.018 1.018 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.116 0.884 34 H 0.164 0.836 35 H 0.177 0.823 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.645 -13.881 -1.129 14.175 hybrid contribution -0.522 1.345 -0.684 1.597 sum 2.123 -12.536 -1.813 12.843 Atomic orbital electron populations 1.23844 0.95817 1.01908 1.01619 1.22819 0.95972 0.97456 0.98845 1.21131 0.95476 0.96393 0.91144 1.62015 1.13602 1.11326 1.37710 1.19413 0.95329 0.83385 0.93527 1.21406 0.96083 0.95232 1.42609 0.92442 1.25680 0.98304 0.98729 0.96188 1.70035 1.24603 1.12446 1.49910 0.85691 0.80015 0.77454 0.78991 1.19953 1.21177 1.19467 1.21191 0.92165 0.98728 0.92476 1.20086 0.94083 0.93156 0.96430 1.21166 0.94621 0.99049 0.97519 1.21406 1.00120 0.94181 0.92030 1.15742 0.96067 1.02124 0.89467 1.25561 0.92524 0.92460 0.92366 1.81257 1.10067 1.09844 1.11960 1.21099 0.93169 0.99175 0.94964 1.20544 0.90273 0.98667 0.95839 1.98366 1.32514 1.78310 1.92810 0.86965 0.89546 0.86769 0.91717 0.94644 0.96267 1.01781 0.92954 0.93675 0.88388 0.83618 0.82347 0.82609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.17 14.32 67.79 0.97 -4.20 16 2 C -0.13 -3.78 9.03 25.65 0.23 -3.55 16 3 C 0.09 3.01 5.24 85.56 0.45 3.46 16 4 N -0.52 -19.78 4.23 -909.95 -3.85 -23.62 16 5 C 0.21 10.04 4.55 85.56 0.39 10.43 16 6 C -0.51 -27.52 8.23 25.60 0.21 -27.31 16 7 H 0.06 3.08 7.31 -2.91 -0.02 3.06 16 8 C 0.01 0.50 5.46 84.65 0.46 0.97 16 9 N -0.93 -53.32 13.29 21.45 0.28 -53.03 16 10 Si 0.95 43.33 29.54 68.60 2.03 45.36 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 13 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 14 C 0.08 2.46 4.26 85.56 0.36 2.82 16 15 C -0.04 -1.00 4.80 -19.78 -0.09 -1.09 16 16 C -0.10 -2.67 8.94 22.23 0.20 -2.47 16 17 C -0.06 -1.26 9.76 22.54 0.22 -1.04 16 18 C -0.03 -0.69 5.73 -21.36 -0.12 -0.81 16 19 C 0.29 7.08 15.33 88.33 1.35 8.43 16 20 N -0.46 -13.09 18.54 19.01 0.35 -12.74 16 21 C -0.06 -1.46 9.54 22.56 0.22 -1.24 16 22 C -0.03 -0.69 6.31 22.29 0.14 -0.54 16 23 Cl -0.05 -1.28 26.81 -2.72 -0.07 -1.35 16 24 H 0.11 2.43 8.06 -2.91 -0.02 2.41 16 25 H 0.09 2.45 7.84 -2.91 -0.02 2.43 16 26 H 0.11 2.89 6.87 -2.91 -0.02 2.87 16 27 H 0.06 2.63 6.23 -2.39 -0.01 2.61 16 28 H 0.04 1.18 8.00 -2.39 -0.02 1.16 16 29 H 0.02 0.98 6.82 -2.39 -0.02 0.96 16 30 H -0.04 -1.86 8.12 -2.39 -0.02 -1.88 16 31 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 32 H 0.05 1.33 7.81 -2.39 -0.02 1.31 16 33 H 0.10 2.55 6.24 -2.39 -0.01 2.53 16 34 H 0.15 3.51 7.99 -2.91 -0.02 3.49 16 35 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -60.99 330.94 4.82 -56.17 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.09 Total: 5.37 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: 4.99 Total: -16.15 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -3.21 Total: -89.39 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.07 Total: -1.35 kcal Total: -60.99 4.82 -56.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428855680.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.780 kcal (2) G-P(sol) polarization free energy of solvation -60.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -4.40 seconds