Wall clock time and date at job start Tue Mar 31 2020 05:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99990 * 2 1 4 4 H 1.48505 * 109.47079 * 270.00200 * 3 2 1 5 5 H 1.48497 * 109.47127 * 29.99775 * 3 2 1 6 6 H 1.48497 * 109.47173 * 150.00312 * 3 2 1 7 7 C 1.37878 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00200 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00163 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47380 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47101 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47051 * 180.02562 * 11 10 9 13 13 C 1.31189 * 120.00374 * 113.99575 * 12 11 10 14 14 C 1.46311 * 119.75331 * 353.16473 * 13 12 11 15 15 C 1.35122 * 119.67557 * 179.72424 * 14 13 12 16 16 C 1.46610 * 119.18748 * 0.25487 * 15 14 13 17 17 C 1.40049 * 120.46522 * 180.02562 * 16 15 14 18 18 Cl 1.73598 * 120.13692 * 359.95249 * 17 16 15 19 19 C 1.37786 * 119.72130 * 179.97438 * 17 16 15 20 20 C 1.38692 * 120.37000 * 359.96222 * 19 17 16 21 21 C 1.37870 * 120.60572 * 0.03764 * 20 19 17 22 22 C 1.39091 * 120.02503 * 359.97438 * 21 20 19 23 23 N 1.37442 * 119.75910 * 173.41199 * 13 12 11 24 24 H 0.96995 * 119.65749 * 359.97438 * 23 13 12 25 25 H 0.96997 * 120.00404 * 0.02562 * 1 2 3 26 26 H 1.09011 * 109.46885 * 59.99755 * 9 7 2 27 27 H 1.08999 * 109.46878 * 300.00498 * 9 7 2 28 28 H 1.09000 * 109.46796 * 60.00324 * 10 9 7 29 29 H 1.08996 * 109.47151 * 300.00226 * 10 9 7 30 30 H 1.08996 * 109.47569 * 60.00031 * 11 10 9 31 31 H 1.09005 * 109.46795 * 299.99558 * 11 10 9 32 32 H 1.08005 * 120.16470 * 359.97438 * 14 13 12 33 33 H 1.08004 * 120.41110 * 180.27232 * 15 14 13 34 34 H 1.07997 * 119.81133 * 179.97438 * 19 17 16 35 35 H 1.08000 * 119.69593 * 180.02562 * 20 19 17 36 36 H 1.07994 * 119.99200 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4803 -4.9871 0.0020 12 7 2.4323 -6.1006 0.0024 13 6 2.5075 -6.8991 1.0406 14 6 1.7494 -6.5875 2.2526 15 6 1.8236 -7.4140 3.3190 16 6 2.6707 -8.6081 3.2406 17 6 2.7668 -9.4832 4.3297 18 17 1.8820 -9.1604 5.7880 19 6 3.5670 -10.6012 4.2391 20 6 4.2758 -10.8639 3.0763 21 6 4.1916 -10.0122 1.9954 22 6 3.3903 -8.8774 2.0643 23 7 3.3017 -8.0193 0.9835 24 1 3.8016 -8.2126 0.1751 25 1 -0.4850 0.8400 -0.0004 26 1 0.6240 -2.5575 -0.8881 27 1 0.6247 -2.5563 0.8919 28 1 2.8726 -3.6039 0.8910 29 1 2.8713 -3.6047 -0.8890 30 1 0.8532 -5.0450 -0.8877 31 1 0.8541 -5.0447 0.8924 32 1 1.1304 -5.7035 2.2933 33 1 1.2656 -7.1978 4.2181 34 1 3.6426 -11.2768 5.0783 35 1 4.8994 -11.7437 3.0170 36 1 4.7481 -10.2261 1.0949 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443442651.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:57 Heat of formation + Delta-G solvation = 27.423529 kcal Electronic energy + Delta-G solvation = -19176.234682 eV Core-core repulsion = 16071.029532 eV Total energy + Delta-G solvation = -3105.205150 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.59539 -38.87675 -37.57756 -36.62936 -35.14407 -34.71777 -33.07873 -30.93428 -30.24951 -28.18303 -25.31879 -24.75633 -23.75548 -22.93189 -21.88257 -19.43214 -19.11054 -18.46124 -17.69403 -16.86512 -16.55137 -16.28687 -16.01174 -15.74427 -15.41887 -15.33149 -14.67626 -14.40727 -14.16189 -13.85720 -13.72613 -13.29503 -12.88494 -12.80042 -12.63255 -12.53328 -12.49065 -12.27849 -11.85361 -11.69491 -11.58284 -11.50175 -11.29635 -10.63287 -10.58215 -10.15575 -9.44281 -8.46858 -8.21840 -6.34202 -0.52647 0.15074 0.72722 1.02799 1.37603 1.39602 1.50883 1.79360 1.93634 2.39245 2.79109 3.09854 3.35972 3.51718 3.68629 3.81330 3.96454 4.17869 4.20932 4.32448 4.43804 4.50786 4.64400 4.68606 4.83957 4.92635 5.01287 5.10120 5.16369 5.21993 5.29782 5.35584 5.47465 5.59148 5.68919 5.80722 5.94403 6.18409 6.24559 6.80805 7.04520 7.34743 8.89292 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.024881 B = 0.002841 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.070804 B = 9851.858561 C =10483.461269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.085 4.085 11 C 0.071 3.929 12 N -0.622 5.622 13 C 0.397 3.603 14 C -0.205 4.205 15 C -0.037 4.037 16 C -0.148 4.148 17 C 0.010 3.990 18 Cl -0.059 7.059 19 C -0.147 4.147 20 C -0.043 4.043 21 C -0.164 4.164 22 C 0.201 3.799 23 N -0.610 5.610 24 H 0.428 0.572 25 H 0.265 0.735 26 H -0.005 1.005 27 H -0.004 1.004 28 H 0.038 0.962 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.145 0.855 33 H 0.152 0.848 34 H 0.160 0.840 35 H 0.178 0.822 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.434 -27.726 10.511 30.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.124 4.124 11 C -0.059 4.059 12 N -0.347 5.347 13 C 0.124 3.876 14 C -0.227 4.227 15 C -0.060 4.060 16 C -0.153 4.153 17 C -0.017 4.017 18 Cl -0.030 7.030 19 C -0.167 4.167 20 C -0.062 4.062 21 C -0.186 4.186 22 C 0.097 3.903 23 N -0.232 5.232 24 H 0.267 0.733 25 H 0.074 0.926 26 H 0.013 0.987 27 H 0.014 0.986 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.162 0.838 33 H 0.169 0.831 34 H 0.178 0.822 35 H 0.195 0.805 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.459 -27.272 9.767 30.178 hybrid contribution -0.490 1.551 0.322 1.658 sum 7.969 -25.721 10.088 28.755 Atomic orbital electron populations 1.70088 1.07726 1.27900 1.51442 1.25986 0.95844 1.03346 0.94542 0.85425 0.78608 0.78279 0.78612 1.19627 1.20297 1.18948 1.21651 0.93362 0.92487 1.50955 0.92703 1.18964 0.94231 0.92672 0.95088 1.21383 0.98032 0.93101 0.99836 1.21973 0.93490 0.89554 1.00923 1.72220 1.25623 1.09937 1.26910 1.20099 0.88990 0.87365 0.91163 1.22836 1.03608 1.02776 0.93438 1.22453 0.94217 0.91036 0.98262 1.18402 1.04349 0.98486 0.94102 1.20926 0.97181 0.96382 0.87238 1.98383 1.74621 1.95390 1.34631 1.21280 0.97914 0.96604 1.00909 1.21434 0.95854 0.98830 0.90048 1.21137 1.01428 0.93448 1.02580 1.17990 0.95397 0.90953 0.85940 1.41330 1.45336 1.20128 1.16408 0.73268 0.92608 0.98703 0.98558 0.94334 0.93608 0.91143 0.93302 0.83799 0.83052 0.82226 0.80457 0.81903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.16 13.29 21.45 0.28 -57.88 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 45.74 29.54 68.60 2.03 47.76 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.55 -32.91 9.11 25.60 0.23 -32.68 16 8 H 0.05 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.03 1.58 4.97 29.85 0.15 1.73 16 10 C -0.09 -4.01 5.48 30.59 0.17 -3.84 16 11 C 0.07 2.85 6.18 86.38 0.53 3.38 16 12 N -0.62 -22.67 10.65 -340.38 -3.63 -26.29 16 13 C 0.40 12.12 7.78 135.83 1.06 13.17 16 14 C -0.20 -5.90 9.29 23.65 0.22 -5.68 16 15 C -0.04 -0.88 9.61 23.74 0.23 -0.65 16 16 C -0.15 -3.09 5.87 -20.10 -0.12 -3.20 16 17 C 0.01 0.17 6.35 22.60 0.14 0.31 16 18 Cl -0.06 -0.98 27.48 -2.72 -0.07 -1.05 16 19 C -0.15 -1.59 9.81 22.27 0.22 -1.37 16 20 C -0.04 -0.33 10.02 22.29 0.22 -0.11 16 21 C -0.16 -1.85 9.88 22.39 0.22 -1.63 16 22 C 0.20 3.82 6.65 38.88 0.26 4.08 16 23 N -0.61 -13.89 5.44 -181.31 -0.99 -14.87 16 24 H 0.43 8.03 8.79 -92.71 -0.81 7.21 16 25 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 26 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 27 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 28 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.05 1.87 5.20 -2.38 -0.01 1.85 16 32 H 0.14 4.38 5.85 -2.91 -0.02 4.37 16 33 H 0.15 3.11 7.04 -2.91 -0.02 3.08 16 34 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 35 H 0.18 0.05 8.06 -2.91 -0.02 0.03 16 36 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -72.72 321.98 1.92 -70.81 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 0.30 Total: 7.51 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 4.00 Total: -25.99 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -4.33 Total: -99.04 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.07 Total: -1.05 kcal Total: -72.72 1.92 -70.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443442651.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.230 kcal (2) G-P(sol) polarization free energy of solvation -72.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds