Wall clock time and date at job start Tue Mar 31 2020 07:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46556 * 2 1 4 4 N 1.46498 * 109.46553 * 180.02562 * 3 2 1 5 5 C 1.36882 * 119.99805 * 260.35504 * 4 3 2 6 6 H 1.07997 * 120.00095 * 198.95567 * 5 4 3 7 7 C 1.39011 * 119.99961 * 18.96153 * 5 4 3 8 8 N 1.31398 * 119.99710 * 23.78803 * 7 5 4 9 9 Si 1.86801 * 120.00010 * 203.78413 * 7 5 4 10 10 H 1.48508 * 109.46795 * 90.00086 * 9 7 5 11 11 H 1.48498 * 109.47186 * 210.00014 * 9 7 5 12 12 H 1.48494 * 109.47098 * 330.00499 * 9 7 5 13 13 C 1.34776 * 120.00639 * 80.36412 * 4 3 2 14 14 O 1.21731 * 120.00580 * 182.21570 * 13 4 3 15 15 C 1.46542 * 119.99503 * 2.21019 * 13 4 3 16 16 C 1.37998 * 126.24322 * 168.98449 * 15 13 4 17 17 C 1.39803 * 107.08848 * 180.02562 * 16 15 13 18 18 C 1.35485 * 107.87846 * 359.97438 * 17 16 15 19 19 C 1.50703 * 125.55583 * 179.97438 * 18 17 16 20 20 F 1.39893 * 109.47476 * 270.02857 * 19 18 17 21 21 F 1.39901 * 109.47269 * 30.03366 * 19 18 17 22 22 F 1.39897 * 109.46666 * 150.02772 * 19 18 17 23 23 N 1.35584 * 108.88204 * 359.73789 * 18 17 16 24 24 H 0.97006 * 125.68393 * 180.28875 * 23 18 17 25 25 H 1.08998 * 109.47110 * 60.00016 * 1 2 3 26 26 H 1.09000 * 109.46629 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46877 * 299.99368 * 1 2 3 28 28 H 1.08995 * 109.47026 * 240.00405 * 2 1 3 29 29 H 1.08998 * 109.47110 * 119.99984 * 2 1 3 30 30 H 1.08998 * 109.47398 * 299.99807 * 3 2 1 31 31 H 1.08995 * 109.47122 * 60.00464 * 3 2 1 32 32 H 0.97005 * 119.99598 * 180.02562 * 8 7 5 33 33 H 1.08004 * 126.45617 * 0.02562 * 16 15 13 34 34 H 1.08005 * 126.06092 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1898 1.6411 1.1678 6 1 5.2258 1.9448 1.1416 7 6 3.5517 1.4514 2.3882 8 7 2.5019 0.6651 2.4655 9 14 4.1870 2.3145 3.9183 10 1 3.5189 3.6336 4.0559 11 1 3.8929 1.4836 5.1134 12 1 5.6540 2.5125 3.8018 13 6 4.1784 1.2474 -1.1516 14 8 5.3951 1.2072 -1.1457 15 6 3.4460 1.0835 -2.4102 16 6 3.9909 1.0903 -3.6781 17 6 2.9382 0.9028 -4.5787 18 6 1.7939 0.7866 -3.8626 19 6 0.4176 0.5731 -4.4383 20 9 -0.1825 1.8126 -4.6841 21 9 0.5192 -0.1417 -5.6366 22 9 -0.3613 -0.1500 -3.5286 23 7 2.0896 0.8885 -2.5433 24 1 1.4515 0.8354 -1.8146 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 2.0565 0.5331 3.3170 33 1 5.0341 1.2167 -3.9276 34 1 3.0222 0.8576 -5.6545 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448765398.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:32 Heat of formation + Delta-G solvation = -110.559773 kcal Electronic energy + Delta-G solvation = -24312.887833 eV Core-core repulsion = 20219.133373 eV Total energy + Delta-G solvation = -4093.754459 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 6.94 seconds Orbital eigenvalues (eV) -50.13871 -47.68033 -47.62171 -41.30372 -38.28932 -35.83242 -33.06488 -31.65023 -30.63066 -30.19178 -26.43811 -25.79772 -24.46020 -21.67759 -21.09229 -20.69528 -20.02510 -18.50330 -18.48096 -17.84848 -17.26085 -16.45618 -15.26438 -14.75624 -14.66562 -14.49853 -14.35186 -14.22979 -14.07471 -13.81405 -13.79136 -13.66811 -13.35289 -13.09579 -12.83375 -12.44715 -12.40883 -12.04062 -11.85698 -11.58975 -11.28042 -11.10334 -10.79871 -10.49762 -10.43960 -10.06439 -9.22486 -8.84274 -8.75733 -8.16061 -7.96044 -6.59774 -4.05916 1.70325 2.51245 2.75790 3.07948 3.14347 3.18732 3.27170 3.86264 3.93927 4.11674 4.27050 4.42611 4.56370 4.85837 5.26363 5.46617 5.47444 5.60828 5.61916 5.77800 5.95947 6.12003 6.19665 6.31030 6.36745 6.51569 6.79722 6.86341 7.08377 7.19140 7.47633 7.52427 7.87621 8.24789 8.91440 9.10100 9.68500 10.39301 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.024222 B = 0.005542 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.708189 B = 5051.549158 C = 5878.737668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.161 4.161 3 C 0.110 3.890 4 N -0.425 5.425 5 C -0.307 4.307 6 H 0.109 0.891 7 C 0.035 3.965 8 N -0.858 5.858 9 Si 0.927 3.073 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.267 1.267 13 C 0.496 3.504 14 O -0.569 6.569 15 C 0.044 3.956 16 C -0.152 4.152 17 C -0.129 4.129 18 C -0.107 4.107 19 C 0.541 3.459 20 F -0.176 7.176 21 F -0.168 7.168 22 F -0.181 7.181 23 N -0.524 5.524 24 H 0.434 0.566 25 H 0.034 0.966 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.131 0.869 30 H 0.036 0.964 31 H 0.103 0.897 32 H 0.272 0.728 33 H 0.154 0.846 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.426 -0.056 -8.423 11.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.200 4.200 3 C -0.014 4.014 4 N -0.141 5.141 5 C -0.435 4.435 6 H 0.127 0.873 7 C -0.170 4.170 8 N -0.496 5.496 9 Si 0.753 3.247 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.191 1.191 13 C 0.285 3.715 14 O -0.453 6.453 15 C -0.074 4.074 16 C -0.177 4.177 17 C -0.156 4.156 18 C -0.222 4.222 19 C 0.486 3.514 20 F -0.157 7.157 21 F -0.149 7.149 22 F -0.162 7.162 23 N -0.132 5.132 24 H 0.286 0.714 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.149 0.851 30 H 0.054 0.946 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.171 0.829 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.137 -0.151 -8.059 10.766 hybrid contribution -0.600 0.217 0.897 1.101 sum -7.737 0.066 -7.162 10.543 Atomic orbital electron populations 1.21717 0.96461 1.01354 1.00826 1.22448 0.94704 0.98032 1.04779 1.21713 0.81922 0.96937 1.00873 1.43713 1.04691 1.58975 1.06765 1.19778 0.98468 1.43702 0.81546 0.87341 1.25360 0.96671 0.95567 0.99406 1.69924 1.21603 1.31070 1.27001 0.85905 0.79773 0.79183 0.79845 1.20170 1.20841 1.19093 1.16763 0.87049 0.85701 0.81978 1.90692 1.12194 1.57058 1.85369 1.21455 0.81266 1.07424 0.97260 1.21214 0.99497 1.07422 0.89574 1.20601 0.90242 1.05237 0.99502 1.19984 0.93300 1.22053 0.86887 1.17383 0.84067 0.74048 0.75879 1.93230 1.85241 1.42856 1.94375 1.93195 1.96283 1.78486 1.46970 1.93201 1.77429 1.78432 1.67133 1.43655 1.09312 1.53787 1.06492 0.71396 0.94733 0.92776 0.91872 0.94162 0.85133 0.94647 0.87893 0.91718 0.82864 0.83468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.75 37.16 0.36 -1.92 16 2 C -0.16 -3.12 4.71 -26.73 -0.13 -3.24 16 3 C 0.11 2.29 4.10 -4.04 -0.02 2.28 16 4 N -0.43 -10.38 2.64 -116.34 -0.31 -10.68 16 5 C -0.31 -8.00 9.26 -15.01 -0.14 -8.13 16 6 H 0.11 2.98 7.44 -52.49 -0.39 2.59 16 7 C 0.04 0.84 4.78 -17.45 -0.08 0.76 16 8 N -0.86 -20.18 8.84 55.50 0.49 -19.69 16 9 Si 0.93 19.08 29.62 -169.99 -5.03 14.05 16 10 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 11 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 12 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 13 C 0.50 12.20 7.50 -12.91 -0.10 12.10 16 14 O -0.57 -15.69 16.57 5.16 0.09 -15.60 16 15 C 0.04 0.92 6.40 -81.98 -0.53 0.39 16 16 C -0.15 -2.74 10.67 -39.08 -0.42 -3.15 16 17 C -0.13 -2.00 10.36 -39.98 -0.41 -2.41 16 18 C -0.11 -1.73 6.48 -81.92 -0.53 -2.26 16 19 C 0.54 7.69 3.54 36.01 0.13 7.82 16 20 F -0.18 -2.45 17.30 2.25 0.04 -2.41 16 21 F -0.17 -2.23 17.00 2.25 0.04 -2.19 16 22 F -0.18 -2.60 17.25 2.25 0.04 -2.56 16 23 N -0.52 -9.48 4.03 -5.68 -0.02 -9.50 16 24 H 0.43 7.63 2.54 -40.82 -0.10 7.52 16 25 H 0.03 0.49 7.44 -51.93 -0.39 0.10 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.04 0.79 6.13 -51.93 -0.32 0.47 16 29 H 0.13 2.91 5.86 -51.93 -0.30 2.60 16 30 H 0.04 0.68 5.37 -51.93 -0.28 0.40 16 31 H 0.10 2.25 6.36 -51.93 -0.33 1.91 16 32 H 0.27 6.06 8.31 -40.82 -0.34 5.72 16 33 H 0.15 2.58 8.06 -52.48 -0.42 2.16 16 34 H 0.15 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 293.98 15.07 4.43 4.43 Total: -1.00 -26.89 293.98 -5.04 -31.93 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -2.94 Total: 10.01 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -1.86 Total: 2.22 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.16 Total: -39.88 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.09 Total: -15.60 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 0.12 Total: -7.16 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -26.89 -5.04 -31.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448765398.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.631 kcal (2) G-P(sol) polarization free energy of solvation -26.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.94 seconds