Wall clock time and date at job start Tue Mar 31 2020 07:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46556 * 2 1 4 4 N 1.46498 * 109.46553 * 180.02562 * 3 2 1 5 5 C 1.36882 * 119.99805 * 260.35504 * 4 3 2 6 6 H 1.07997 * 120.00095 * 198.95567 * 5 4 3 7 7 C 1.39011 * 119.99961 * 18.96153 * 5 4 3 8 8 N 1.31398 * 119.99710 * 23.78803 * 7 5 4 9 9 Si 1.86801 * 120.00010 * 203.78413 * 7 5 4 10 10 H 1.48508 * 109.46795 * 90.00086 * 9 7 5 11 11 H 1.48498 * 109.47186 * 210.00014 * 9 7 5 12 12 H 1.48494 * 109.47098 * 330.00499 * 9 7 5 13 13 C 1.34776 * 120.00639 * 80.36412 * 4 3 2 14 14 O 1.21731 * 120.00580 * 182.21570 * 13 4 3 15 15 C 1.46542 * 119.99503 * 2.21019 * 13 4 3 16 16 C 1.37998 * 126.24322 * 168.98449 * 15 13 4 17 17 C 1.39803 * 107.08848 * 180.02562 * 16 15 13 18 18 C 1.35485 * 107.87846 * 359.97438 * 17 16 15 19 19 C 1.50703 * 125.55583 * 179.97438 * 18 17 16 20 20 F 1.39893 * 109.47476 * 270.02857 * 19 18 17 21 21 F 1.39901 * 109.47269 * 30.03366 * 19 18 17 22 22 F 1.39897 * 109.46666 * 150.02772 * 19 18 17 23 23 N 1.35584 * 108.88204 * 359.73789 * 18 17 16 24 24 H 0.97006 * 125.68393 * 180.28875 * 23 18 17 25 25 H 1.08998 * 109.47110 * 60.00016 * 1 2 3 26 26 H 1.09000 * 109.46629 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46877 * 299.99368 * 1 2 3 28 28 H 1.08995 * 109.47026 * 240.00405 * 2 1 3 29 29 H 1.08998 * 109.47110 * 119.99984 * 2 1 3 30 30 H 1.08998 * 109.47398 * 299.99807 * 3 2 1 31 31 H 1.08995 * 109.47122 * 60.00464 * 3 2 1 32 32 H 0.97005 * 119.99598 * 180.02562 * 8 7 5 33 33 H 1.08004 * 126.45617 * 0.02562 * 16 15 13 34 34 H 1.08005 * 126.06092 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1898 1.6411 1.1678 6 1 5.2258 1.9448 1.1416 7 6 3.5517 1.4514 2.3882 8 7 2.5019 0.6651 2.4655 9 14 4.1870 2.3145 3.9183 10 1 3.5189 3.6336 4.0559 11 1 3.8929 1.4836 5.1134 12 1 5.6540 2.5125 3.8018 13 6 4.1784 1.2474 -1.1516 14 8 5.3951 1.2072 -1.1457 15 6 3.4460 1.0835 -2.4102 16 6 3.9909 1.0903 -3.6781 17 6 2.9382 0.9028 -4.5787 18 6 1.7939 0.7866 -3.8626 19 6 0.4176 0.5731 -4.4383 20 9 -0.1825 1.8126 -4.6841 21 9 0.5192 -0.1417 -5.6366 22 9 -0.3613 -0.1500 -3.5286 23 7 2.0896 0.8885 -2.5433 24 1 1.4515 0.8354 -1.8146 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 2.0565 0.5331 3.3170 33 1 5.0341 1.2167 -3.9276 34 1 3.0222 0.8576 -5.6545 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448765398.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:25 Heat of formation + Delta-G solvation = -124.734501 kcal Electronic energy + Delta-G solvation = -24313.502495 eV Core-core repulsion = 20219.133373 eV Total energy + Delta-G solvation = -4094.369122 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 8.68 seconds Orbital eigenvalues (eV) -51.25851 -48.79622 -48.72640 -42.77250 -40.04601 -37.63844 -34.76167 -33.43312 -32.04642 -31.60197 -28.08880 -27.29953 -26.02680 -23.23536 -22.62572 -22.08703 -21.42250 -19.83005 -19.61847 -19.16605 -19.05892 -18.13642 -16.97583 -16.27083 -16.18475 -16.00283 -15.64009 -15.59516 -15.24575 -15.17720 -14.93860 -14.88707 -14.87225 -14.51966 -14.23438 -14.06527 -13.84841 -13.72853 -13.23395 -13.08469 -12.88414 -12.68412 -12.41699 -12.22620 -12.13879 -11.65582 -11.03884 -10.72988 -10.17431 -9.84670 -9.58408 -8.44196 -6.01326 0.22114 1.25339 1.32459 1.43321 1.47904 1.53841 1.95821 2.22071 2.35001 2.64221 2.82868 2.99025 3.08226 3.28495 3.66054 3.88492 4.15074 4.17403 4.23464 4.28979 4.52882 4.70619 4.80807 4.87592 5.02389 5.11014 5.32480 5.34418 5.42624 5.70225 5.77463 5.95394 6.10031 6.39390 7.01765 7.23152 7.81793 8.52630 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.024222 B = 0.005542 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.708189 B = 5051.549158 C = 5878.737668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.151 4.151 3 C 0.114 3.886 4 N -0.435 5.435 5 C -0.353 4.353 6 H 0.078 0.922 7 C 0.012 3.988 8 N -0.859 5.859 9 Si 0.989 3.011 10 H -0.266 1.266 11 H -0.272 1.272 12 H -0.277 1.277 13 C 0.484 3.516 14 O -0.618 6.618 15 C 0.005 3.995 16 C -0.143 4.143 17 C -0.119 4.119 18 C -0.097 4.097 19 C 0.552 3.448 20 F -0.170 7.170 21 F -0.157 7.157 22 F -0.179 7.179 23 N -0.524 5.524 24 H 0.434 0.566 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.280 0.720 33 H 0.159 0.841 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.510 -0.138 -9.470 13.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.190 4.190 3 C -0.010 4.010 4 N -0.150 5.150 5 C -0.481 4.481 6 H 0.096 0.904 7 C -0.193 4.193 8 N -0.495 5.495 9 Si 0.812 3.188 10 H -0.191 1.191 11 H -0.197 1.197 12 H -0.202 1.202 13 C 0.274 3.726 14 O -0.505 6.505 15 C -0.112 4.112 16 C -0.169 4.169 17 C -0.145 4.145 18 C -0.213 4.213 19 C 0.496 3.504 20 F -0.152 7.152 21 F -0.138 7.138 22 F -0.161 7.161 23 N -0.132 5.132 24 H 0.286 0.714 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.177 0.823 34 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -9.277 -0.244 -9.100 12.998 hybrid contribution 0.003 0.199 1.143 1.160 sum -9.274 -0.045 -7.957 12.220 Atomic orbital electron populations 1.21657 0.93317 1.02751 1.01798 1.22272 0.97303 0.96374 1.03021 1.21796 0.80044 0.98090 1.01036 1.43904 1.06064 1.58595 1.06441 1.19652 0.98158 1.46995 0.83273 0.90363 1.26024 0.96857 0.95317 1.01103 1.70005 1.21436 1.30074 1.27988 0.85009 0.78556 0.78564 0.76677 1.19071 1.19684 1.20242 1.17322 0.86955 0.84984 0.83306 1.90626 1.14222 1.59238 1.86458 1.20946 0.82543 1.11483 0.96260 1.21487 1.00547 1.05714 0.89161 1.20988 0.88716 1.03737 1.01030 1.20461 0.94826 1.19949 0.86033 1.17057 0.82970 0.74280 0.76053 1.93249 1.84967 1.42626 1.94325 1.93227 1.96175 1.78236 1.46207 1.93210 1.77210 1.78413 1.67236 1.43509 1.08308 1.53989 1.07436 0.71435 0.92964 0.91182 0.91656 0.94652 0.88095 0.92895 0.89108 0.90955 0.82311 0.79563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 9.75 71.98 0.70 -3.33 16 2 C -0.15 -5.81 4.71 30.60 0.14 -5.67 16 3 C 0.11 4.80 4.10 86.38 0.35 5.15 16 4 N -0.43 -22.11 2.64 -640.20 -1.69 -23.81 16 5 C -0.35 -19.31 9.26 84.09 0.78 -18.53 16 6 H 0.08 4.63 7.44 -2.91 -0.02 4.61 16 7 C 0.01 0.60 4.78 84.94 0.41 1.01 16 8 N -0.86 -40.57 8.84 21.68 0.19 -40.37 16 9 Si 0.99 39.50 29.62 68.60 2.03 41.53 16 10 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 11 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 12 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 13 C 0.48 24.87 7.50 86.41 0.65 25.52 16 14 O -0.62 -36.11 16.57 -4.45 -0.07 -36.19 16 15 C 0.00 0.20 6.40 40.33 0.26 0.46 16 16 C -0.14 -5.00 10.67 22.59 0.24 -4.76 16 17 C -0.12 -3.31 10.36 22.01 0.23 -3.08 16 18 C -0.10 -2.85 6.48 41.34 0.27 -2.58 16 19 C 0.55 13.70 3.54 71.24 0.25 13.95 16 20 F -0.17 -4.14 17.30 44.97 0.78 -3.37 16 21 F -0.16 -3.53 17.00 44.97 0.76 -2.77 16 22 F -0.18 -4.55 17.25 44.97 0.78 -3.77 16 23 N -0.52 -18.29 4.03 -171.88 -0.69 -18.98 16 24 H 0.43 14.68 2.54 -92.70 -0.24 14.44 16 25 H 0.05 1.34 7.44 -2.39 -0.02 1.32 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.04 1.38 6.13 -2.39 -0.01 1.36 16 29 H 0.10 4.54 5.86 -2.39 -0.01 4.53 16 30 H 0.05 2.02 5.37 -2.39 -0.01 2.01 16 31 H 0.09 4.00 6.36 -2.39 -0.02 3.99 16 32 H 0.28 12.26 8.31 -92.70 -0.77 11.49 16 33 H 0.16 5.28 8.06 -2.91 -0.02 5.26 16 34 H 0.19 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -60.43 293.98 7.30 -53.13 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.93 Total: 26.44 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 4.28 Total: 8.15 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -2.19 Total: -83.16 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -0.07 Total: -36.19 kcal Atomic # 9 Polarization: -12.23 SS G_CDS: 2.32 Total: -9.91 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -60.43 7.30 -53.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448765398.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.603 kcal (2) G-P(sol) polarization free energy of solvation -60.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.68 seconds