Wall clock time and date at job start Tue Mar 31 2020 08:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.46814 * 2 1 4 4 C 1.46494 * 119.99853 * 91.60667 * 3 2 1 5 5 C 1.50702 * 109.47133 * 90.00082 * 4 3 2 6 6 H 1.08006 * 120.00034 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00193 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99638 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00148 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47403 * 60.00014 * 9 7 5 11 11 H 1.48499 * 109.47032 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46830 * 300.00021 * 9 7 5 13 13 C 1.34778 * 119.99508 * 271.60446 * 3 2 1 14 14 O 1.21702 * 119.99596 * 186.04880 * 13 3 2 15 15 C 1.46678 * 120.00560 * 6.05132 * 13 3 2 16 16 C 1.37870 * 126.23496 * 187.80002 * 15 13 3 17 17 C 1.39836 * 107.08246 * 179.97438 * 16 15 13 18 18 C 1.35451 * 107.86765 * 0.02562 * 17 16 15 19 19 C 1.50696 * 125.56262 * 180.02562 * 18 17 16 20 20 F 1.39892 * 109.47719 * 269.97758 * 19 18 17 21 21 F 1.39899 * 109.46911 * 29.98436 * 19 18 17 22 22 F 1.39907 * 109.46827 * 149.97579 * 19 18 17 23 23 N 1.35528 * 108.87188 * 359.73175 * 18 17 16 24 24 H 0.97001 * 125.68556 * 180.30547 * 23 18 17 25 25 H 1.09001 * 109.47053 * 60.00653 * 1 2 3 26 26 H 1.09004 * 109.46686 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47455 * 299.99877 * 1 2 3 28 28 H 1.08995 * 109.47665 * 119.99659 * 2 1 3 29 29 H 1.08998 * 109.47455 * 240.00123 * 2 1 3 30 30 H 1.09007 * 109.46694 * 209.99392 * 4 3 2 31 31 H 1.08998 * 109.47613 * 329.99822 * 4 3 2 32 32 H 0.97004 * 119.99624 * 180.02562 * 8 7 5 33 33 H 1.07997 * 126.45609 * 0.04452 * 16 15 13 34 34 H 1.08006 * 126.06428 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2959 2.0600 1.2682 5 6 3.7302 1.8194 1.6632 6 1 4.3710 1.2211 1.0324 7 6 4.2247 2.3639 2.8294 8 7 3.4446 3.0929 3.5973 9 14 6.0028 2.0663 3.3187 10 1 6.9022 2.5994 2.2643 11 1 6.2842 2.7542 4.6043 12 1 6.2351 0.6081 3.4768 13 6 2.2120 2.0275 -1.1668 14 8 2.7205 3.1331 -1.1729 15 6 1.8100 1.3982 -2.4293 16 6 2.0805 1.8686 -3.6967 17 6 1.5152 0.9633 -4.6002 18 6 0.9219 -0.0220 -3.8849 19 6 0.1909 -1.2062 -4.4629 20 9 -1.1608 -0.8852 -4.6273 21 9 0.7460 -1.5366 -5.7038 22 9 0.3089 -2.2965 -3.5942 23 7 1.0986 0.2275 -2.5645 24 1 0.7761 -0.3258 -1.8360 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5137 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 2.1257 3.1305 1.1522 31 1 1.6354 1.6688 2.0420 32 1 3.7926 3.4763 4.4175 33 1 2.6271 2.7664 -3.9449 34 1 1.5456 1.0372 -5.6773 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448768762.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:07 Heat of formation + Delta-G solvation = -117.291289 kcal Electronic energy + Delta-G solvation = -23541.550988 eV Core-core repulsion = 19447.504628 eV Total energy + Delta-G solvation = -4094.046360 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.40875 -47.95470 -47.88398 -41.72078 -38.67591 -35.88333 -33.07390 -31.53003 -30.69723 -30.20583 -27.58025 -25.74702 -23.37444 -23.35982 -21.40160 -20.80561 -20.24114 -18.77341 -18.60238 -18.08298 -16.89003 -16.48544 -15.56876 -15.19277 -15.01883 -14.74107 -14.69120 -14.34511 -14.31445 -14.08410 -14.04871 -13.99358 -13.73717 -13.26183 -12.93303 -12.83155 -12.42725 -12.21803 -12.17664 -12.01999 -11.37965 -11.16104 -10.95446 -10.65046 -10.23188 -9.78721 -9.39756 -9.19256 -8.59493 -8.50688 -7.91151 -6.12273 -4.17538 1.26950 2.16797 2.40394 2.87709 3.28260 3.33027 3.35704 3.51701 3.61304 3.75578 3.94130 4.13675 4.38838 4.68956 4.83190 5.09210 5.12998 5.19244 5.22877 5.33439 5.56675 5.78659 5.88651 5.95833 6.14918 6.38687 6.65446 6.87067 7.04643 7.24904 7.33982 7.82831 8.10175 8.13400 8.69434 8.88004 9.47840 10.95894 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.028100 B = 0.004099 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.203802 B = 6828.911506 C = 7067.678186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.086 3.914 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.530 4.530 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.900 3.100 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.572 3.428 14 O -0.513 6.513 15 C 0.017 3.983 16 C -0.128 4.128 17 C -0.130 4.130 18 C -0.088 4.088 19 C 0.542 3.458 20 F -0.173 7.173 21 F -0.165 7.165 22 F -0.181 7.181 23 N -0.523 5.523 24 H 0.431 0.569 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.036 0.964 32 H 0.265 0.735 33 H 0.160 0.840 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.296 -9.824 -14.244 19.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.039 4.039 3 N -0.323 5.323 4 C 0.129 3.871 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.203 1.203 13 C 0.357 3.643 14 O -0.388 6.388 15 C -0.101 4.101 16 C -0.153 4.153 17 C -0.156 4.156 18 C -0.204 4.204 19 C 0.487 3.513 20 F -0.154 7.154 21 F -0.146 7.146 22 F -0.162 7.162 23 N -0.130 5.130 24 H 0.282 0.718 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.119 0.881 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.178 0.822 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.109 -9.259 -13.848 18.527 hybrid contribution 0.637 -0.749 0.552 1.128 sum -7.473 -10.008 -13.295 18.242 Atomic orbital electron populations 1.22576 0.96614 1.02566 1.03737 1.21812 0.93458 0.85133 1.03527 1.48256 1.63367 1.12608 1.08030 1.19383 0.96518 0.93779 0.77395 1.21359 0.96208 1.32858 1.06491 0.92370 1.24925 0.98097 0.94751 0.96159 1.69916 1.35990 1.33579 1.13774 0.86527 0.84666 0.78289 0.77784 1.20055 1.21117 1.20252 1.16992 0.80005 0.85612 0.81659 1.90858 1.42811 1.19391 1.85711 1.21324 1.02784 0.88906 0.97039 1.21361 1.03421 1.01204 0.89337 1.20709 1.00973 0.93983 0.99947 1.20080 1.13085 1.00715 0.86489 1.17338 0.76880 0.81064 0.76067 1.93250 1.34069 1.92609 1.95453 1.93219 1.85272 1.92973 1.43128 1.93207 1.95836 1.57452 1.69700 1.43379 1.42537 1.20621 1.06473 0.71827 0.92617 0.91034 0.90015 0.88130 0.91741 0.93553 0.94567 0.92538 0.82244 0.82882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.38 8.92 37.16 0.33 -2.05 16 2 C 0.09 1.29 5.61 -4.04 -0.02 1.27 16 3 N -0.59 -12.02 2.46 -176.60 -0.43 -12.45 16 4 C 0.25 6.19 5.11 -5.20 -0.03 6.16 16 5 C -0.53 -14.60 9.39 -34.44 -0.32 -14.92 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -25.84 13.29 55.43 0.74 -25.11 16 9 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.57 11.86 7.62 -12.85 -0.10 11.76 16 14 O -0.51 -12.68 16.54 5.19 0.09 -12.60 16 15 C 0.02 0.27 6.56 -81.98 -0.54 -0.26 16 16 C -0.13 -1.85 10.66 -39.12 -0.42 -2.27 16 17 C -0.13 -1.57 10.36 -39.98 -0.41 -1.98 16 18 C -0.09 -1.08 6.48 -81.96 -0.53 -1.62 16 19 C 0.54 5.90 3.54 36.00 0.13 6.03 16 20 F -0.17 -1.89 17.30 2.25 0.04 -1.85 16 21 F -0.16 -1.73 17.00 2.25 0.04 -1.69 16 22 F -0.18 -1.96 17.26 2.25 0.04 -1.92 16 23 N -0.52 -7.06 4.15 -5.70 -0.02 -7.08 16 24 H 0.43 5.24 3.39 -40.82 -0.14 5.10 16 25 H 0.06 0.68 6.42 -51.93 -0.33 0.35 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.10 1.53 8.06 -51.93 -0.42 1.11 16 29 H 0.06 0.88 5.25 -51.93 -0.27 0.60 16 30 H 0.05 1.30 7.51 -51.92 -0.39 0.91 16 31 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.16 2.18 8.06 -52.49 -0.42 1.75 16 34 H 0.15 1.42 8.06 -52.48 -0.42 0.99 16 LS Contribution 305.77 15.07 4.61 4.61 Total: -1.00 -30.95 305.77 -5.15 -36.10 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -3.21 Total: 1.78 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -2.01 Total: 3.78 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.28 Total: -44.64 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.60 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.12 Total: -5.47 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.95 -5.15 -36.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448768762.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.187 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds