Wall clock time and date at job start Tue Mar 31 2020 08:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.46814 * 2 1 4 4 C 1.46494 * 119.99853 * 91.60667 * 3 2 1 5 5 C 1.50702 * 109.47133 * 90.00082 * 4 3 2 6 6 H 1.08006 * 120.00034 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00193 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99638 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00148 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47403 * 60.00014 * 9 7 5 11 11 H 1.48499 * 109.47032 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46830 * 300.00021 * 9 7 5 13 13 C 1.34778 * 119.99508 * 271.60446 * 3 2 1 14 14 O 1.21702 * 119.99596 * 186.04880 * 13 3 2 15 15 C 1.46678 * 120.00560 * 6.05132 * 13 3 2 16 16 C 1.37870 * 126.23496 * 187.80002 * 15 13 3 17 17 C 1.39836 * 107.08246 * 179.97438 * 16 15 13 18 18 C 1.35451 * 107.86765 * 0.02562 * 17 16 15 19 19 C 1.50696 * 125.56262 * 180.02562 * 18 17 16 20 20 F 1.39892 * 109.47719 * 269.97758 * 19 18 17 21 21 F 1.39899 * 109.46911 * 29.98436 * 19 18 17 22 22 F 1.39907 * 109.46827 * 149.97579 * 19 18 17 23 23 N 1.35528 * 108.87188 * 359.73175 * 18 17 16 24 24 H 0.97001 * 125.68556 * 180.30547 * 23 18 17 25 25 H 1.09001 * 109.47053 * 60.00653 * 1 2 3 26 26 H 1.09004 * 109.46686 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47455 * 299.99877 * 1 2 3 28 28 H 1.08995 * 109.47665 * 119.99659 * 2 1 3 29 29 H 1.08998 * 109.47455 * 240.00123 * 2 1 3 30 30 H 1.09007 * 109.46694 * 209.99392 * 4 3 2 31 31 H 1.08998 * 109.47613 * 329.99822 * 4 3 2 32 32 H 0.97004 * 119.99624 * 180.02562 * 8 7 5 33 33 H 1.07997 * 126.45609 * 0.04452 * 16 15 13 34 34 H 1.08006 * 126.06428 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2959 2.0600 1.2682 5 6 3.7302 1.8194 1.6632 6 1 4.3710 1.2211 1.0324 7 6 4.2247 2.3639 2.8294 8 7 3.4446 3.0929 3.5973 9 14 6.0028 2.0663 3.3187 10 1 6.9022 2.5994 2.2643 11 1 6.2842 2.7542 4.6043 12 1 6.2351 0.6081 3.4768 13 6 2.2120 2.0275 -1.1668 14 8 2.7205 3.1331 -1.1729 15 6 1.8100 1.3982 -2.4293 16 6 2.0805 1.8686 -3.6967 17 6 1.5152 0.9633 -4.6002 18 6 0.9219 -0.0220 -3.8849 19 6 0.1909 -1.2062 -4.4629 20 9 -1.1608 -0.8852 -4.6273 21 9 0.7460 -1.5366 -5.7038 22 9 0.3089 -2.2965 -3.5942 23 7 1.0986 0.2275 -2.5645 24 1 0.7761 -0.3258 -1.8360 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5137 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 2.1257 3.1305 1.1522 31 1 1.6354 1.6688 2.0420 32 1 3.7926 3.4763 4.4175 33 1 2.6271 2.7664 -3.9449 34 1 1.5456 1.0372 -5.6773 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448768762.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:04 Heat of formation + Delta-G solvation = -135.897510 kcal Electronic energy + Delta-G solvation = -23542.357814 eV Core-core repulsion = 19447.504628 eV Total energy + Delta-G solvation = -4094.853186 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.26785 -48.80565 -48.73771 -42.89168 -40.23614 -37.43530 -35.06847 -32.91868 -31.88436 -31.42925 -29.35979 -27.01602 -25.14093 -24.60983 -22.61112 -21.97755 -21.42300 -19.66601 -19.60591 -19.18789 -18.68363 -18.16569 -17.26077 -16.48654 -16.40434 -16.00189 -15.66622 -15.59190 -15.32212 -15.18023 -15.09702 -14.90915 -14.88905 -14.41960 -14.25700 -14.09116 -13.99219 -13.70053 -13.42677 -13.24282 -13.12602 -12.80156 -12.60767 -12.34548 -12.14647 -11.79950 -11.09030 -10.65856 -10.26011 -9.86542 -9.54469 -8.25139 -6.39501 0.06218 1.17265 1.29083 1.37135 1.40931 1.48277 1.84379 2.08167 2.27343 2.39435 2.60744 3.03772 3.05319 3.26179 3.40045 3.66438 3.98478 4.04180 4.14133 4.24753 4.59935 4.69077 4.70680 4.88465 4.96996 5.10748 5.17118 5.32330 5.45529 5.59054 5.73324 5.95819 6.00630 6.50050 6.67650 7.10887 7.32278 8.82046 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.028100 B = 0.004099 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.203802 B = 6828.911506 C = 7067.678186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.079 3.921 3 N -0.597 5.597 4 C 0.263 3.737 5 C -0.547 4.547 6 H 0.052 0.948 7 C 0.012 3.988 8 N -0.925 5.925 9 Si 0.966 3.034 10 H -0.279 1.279 11 H -0.277 1.277 12 H -0.261 1.261 13 C 0.567 3.433 14 O -0.570 6.570 15 C -0.014 4.014 16 C -0.122 4.122 17 C -0.123 4.123 18 C -0.074 4.074 19 C 0.551 3.449 20 F -0.170 7.170 21 F -0.158 7.158 22 F -0.177 7.177 23 N -0.516 5.516 24 H 0.436 0.564 25 H 0.055 0.945 26 H 0.112 0.888 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.003 0.997 31 H 0.033 0.967 32 H 0.268 0.732 33 H 0.162 0.838 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.541 -12.059 -15.824 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.044 4.044 3 N -0.327 5.327 4 C 0.143 3.857 5 C -0.585 4.585 6 H 0.070 0.930 7 C -0.187 4.187 8 N -0.565 5.565 9 Si 0.790 3.210 10 H -0.204 1.204 11 H -0.202 1.202 12 H -0.186 1.186 13 C 0.355 3.645 14 O -0.449 6.449 15 C -0.131 4.131 16 C -0.148 4.148 17 C -0.149 4.149 18 C -0.190 4.190 19 C 0.496 3.504 20 F -0.151 7.151 21 F -0.139 7.139 22 F -0.159 7.159 23 N -0.124 5.124 24 H 0.288 0.712 25 H 0.074 0.926 26 H 0.131 0.869 27 H 0.087 0.913 28 H 0.117 0.883 29 H 0.102 0.898 30 H 0.021 0.979 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.179 0.821 34 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -8.386 -11.553 -15.430 21.021 hybrid contribution 0.648 -0.095 0.953 1.156 sum -7.738 -11.648 -14.477 20.128 Atomic orbital electron populations 1.22514 0.93942 1.05030 1.03136 1.22120 0.95626 0.82213 1.04417 1.48215 1.63450 1.14493 1.06560 1.18848 0.95563 0.91836 0.79501 1.21630 0.97298 1.32911 1.06660 0.92999 1.25798 1.02453 0.94344 0.96118 1.70027 1.37922 1.34317 1.14201 0.85492 0.79122 0.78986 0.77373 1.20417 1.20244 1.18583 1.17530 0.78943 0.85077 0.82917 1.90805 1.45536 1.21820 1.86780 1.20616 1.06111 0.90961 0.95386 1.21594 1.02618 1.01457 0.89132 1.21046 0.99814 0.92744 1.01287 1.20441 1.11773 1.00977 0.85847 1.17054 0.76711 0.80452 0.76156 1.93265 1.33797 1.92593 1.95435 1.93243 1.85199 1.92835 1.42647 1.93222 1.95813 1.57166 1.69679 1.43225 1.42129 1.19736 1.07300 0.71246 0.92579 0.86928 0.91287 0.88346 0.89757 0.97868 0.94875 0.92279 0.82068 0.79541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.26 8.92 71.98 0.64 -3.62 16 2 C 0.08 2.35 5.61 86.38 0.48 2.83 16 3 N -0.60 -25.08 2.46 -830.86 -2.04 -27.12 16 4 C 0.26 13.83 5.11 85.63 0.44 14.27 16 5 C -0.55 -31.02 9.39 25.60 0.24 -30.78 16 6 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.70 5.46 84.65 0.46 1.17 16 8 N -0.93 -54.83 13.29 21.45 0.28 -54.55 16 9 Si 0.97 44.33 29.54 68.60 2.03 46.36 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 13 C 0.57 24.40 7.62 86.45 0.66 25.06 16 14 O -0.57 -29.89 16.54 -4.36 -0.07 -29.96 16 15 C -0.01 -0.47 6.56 40.35 0.26 -0.20 16 16 C -0.12 -3.38 10.66 22.57 0.24 -3.14 16 17 C -0.12 -2.59 10.36 22.01 0.23 -2.36 16 18 C -0.07 -1.58 6.48 41.34 0.27 -1.31 16 19 C 0.55 10.00 3.54 71.23 0.25 10.25 16 20 F -0.17 -3.12 17.30 44.97 0.78 -2.35 16 21 F -0.16 -2.71 17.00 44.97 0.76 -1.95 16 22 F -0.18 -3.21 17.26 44.97 0.78 -2.43 16 23 N -0.52 -12.86 4.15 -171.94 -0.71 -13.58 16 24 H 0.44 9.55 3.39 -92.71 -0.31 9.24 16 25 H 0.06 1.28 6.42 -2.39 -0.02 1.26 16 26 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.10 2.95 8.06 -2.39 -0.02 2.93 16 29 H 0.08 2.16 5.25 -2.39 -0.01 2.15 16 30 H 0.00 0.19 7.51 -2.38 -0.02 0.18 16 31 H 0.03 1.73 8.07 -2.39 -0.02 1.71 16 32 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 33 H 0.16 4.34 8.06 -2.91 -0.02 4.32 16 34 H 0.19 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -69.68 305.77 6.82 -62.86 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.84 Total: 10.56 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 4.18 Total: 12.15 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -2.47 Total: -95.24 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.07 Total: -29.96 kcal Atomic # 9 Polarization: -9.05 SS G_CDS: 2.32 Total: -6.73 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -69.68 6.82 -62.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448768762.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.039 kcal (2) G-P(sol) polarization free energy of solvation -69.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds