Wall clock time and date at job start Tue Mar 31 2020 06:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00399 * 2 1 4 4 H 1.48490 * 109.47198 * 239.99926 * 3 2 1 5 5 H 1.48506 * 109.46650 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47066 * 119.99634 * 3 2 1 7 7 C 1.37884 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99838 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00200 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46861 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46969 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47035 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99873 * 179.97438 * 12 11 10 14 14 O 1.21695 * 119.99811 * 0.02562 * 13 12 11 15 15 C 1.46676 * 119.99963 * 180.02562 * 13 12 11 16 16 C 1.37874 * 126.23372 * 180.02562 * 15 13 12 17 17 C 1.39834 * 107.08703 * 180.02562 * 16 15 13 18 18 C 1.35453 * 107.86224 * 359.97438 * 17 16 15 19 19 C 1.50693 * 125.56124 * 179.97438 * 18 17 16 20 20 F 1.39902 * 109.47273 * 270.02252 * 19 18 17 21 21 F 1.39900 * 109.47700 * 30.02425 * 19 18 17 22 22 F 1.39898 * 109.47165 * 150.02718 * 19 18 17 23 23 N 1.35530 * 108.87272 * 359.73297 * 18 17 16 24 24 H 0.97004 * 125.68193 * 180.30491 * 23 18 17 25 25 H 0.97002 * 119.99797 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.46824 * 60.00052 * 9 7 2 27 27 H 1.08996 * 109.46811 * 299.99879 * 9 7 2 28 28 H 1.09004 * 109.47298 * 60.00075 * 10 9 7 29 29 H 1.09004 * 109.47552 * 299.99947 * 10 9 7 30 30 H 1.09004 * 109.46930 * 59.99996 * 11 10 9 31 31 H 1.09000 * 109.47312 * 299.99939 * 11 10 9 32 32 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 33 33 H 1.08000 * 126.45472 * 0.04216 * 16 15 13 34 34 H 1.07999 * 126.06905 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 7 2.4322 -6.1007 -0.0005 13 6 1.9829 -7.3714 0.0004 14 8 0.7864 -7.5937 0.0013 15 6 2.9360 -8.4862 0.0004 16 6 2.6202 -9.8283 0.0008 17 6 3.8272 -10.5344 0.0011 18 6 4.8368 -9.6313 0.0004 19 6 6.3073 -9.9608 0.0011 20 9 6.7620 -10.0618 1.3202 21 9 6.5130 -11.1777 -0.6576 22 9 7.0123 -8.9484 -0.6588 23 7 4.3086 -8.3832 -0.0064 24 1 4.8137 -7.5551 -0.0125 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5567 -0.8902 27 1 0.6247 -2.5571 0.8897 28 1 2.8719 -3.6044 0.8895 29 1 2.8719 -3.6044 -0.8905 30 1 0.8531 -5.0451 -0.8897 31 1 0.8538 -5.0446 0.8903 32 1 3.3858 -5.9235 -0.0008 33 1 1.6277 -10.2541 0.0005 34 1 3.9353 -11.6090 0.0019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448907284.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:36 Heat of formation + Delta-G solvation = -160.218539 kcal Electronic energy + Delta-G solvation = -21926.909199 eV Core-core repulsion = 17831.001374 eV Total energy + Delta-G solvation = -4095.907825 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.62390 -48.16906 -48.09754 -41.87924 -39.23374 -35.64323 -33.50559 -31.93718 -31.42629 -30.74586 -27.31543 -25.95741 -23.57319 -22.20065 -21.17928 -20.86607 -20.59618 -19.45335 -18.98364 -18.62593 -17.54703 -16.51638 -15.75512 -15.60043 -15.07097 -15.06916 -14.80225 -14.64624 -14.54698 -14.52265 -14.32634 -14.25285 -14.17883 -13.69651 -13.58322 -13.13543 -12.50337 -12.35699 -11.94353 -11.86329 -10.94460 -10.86004 -10.70325 -10.32703 -9.97789 -9.62443 -9.52439 -9.21338 -9.18031 -8.87300 -8.42979 -6.07653 -4.11346 0.81042 1.84026 2.00276 2.52355 3.04408 3.13963 3.25276 3.27906 3.33144 3.34774 3.66281 3.89756 4.39007 4.53315 4.71794 4.82426 5.28162 5.39965 5.50462 5.62670 5.63009 5.99911 6.01565 6.19710 6.27030 6.45762 6.58993 6.67510 6.87440 7.38998 7.55418 7.67187 7.89969 8.02453 8.30693 8.94858 9.53215 11.03542 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.023748 B = 0.002727 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.786637 B =10263.912427 C =11252.301768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.122 4.122 11 C 0.116 3.884 12 N -0.722 5.722 13 C 0.580 3.420 14 O -0.520 6.520 15 C 0.003 3.997 16 C -0.116 4.116 17 C -0.130 4.130 18 C -0.066 4.066 19 C 0.541 3.459 20 F -0.170 7.170 21 F -0.163 7.163 22 F -0.178 7.178 23 N -0.514 5.514 24 H 0.424 0.576 25 H 0.262 0.738 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.393 0.607 33 H 0.163 0.837 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.213 -22.179 -0.010 25.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.006 4.006 12 N -0.372 5.372 13 C 0.365 3.635 14 O -0.395 6.395 15 C -0.113 4.113 16 C -0.141 4.141 17 C -0.156 4.156 18 C -0.183 4.183 19 C 0.486 3.514 20 F -0.151 7.151 21 F -0.144 7.144 22 F -0.159 7.159 23 N -0.111 5.111 24 H 0.263 0.737 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.226 0.774 33 H 0.181 0.819 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 11.269 -22.017 -0.012 24.733 hybrid contribution 1.520 1.426 -0.001 2.084 sum 12.789 -20.591 -0.014 24.239 Atomic orbital electron populations 1.69950 1.06070 1.26913 1.50240 1.25028 0.94867 0.99330 0.95160 0.86632 0.79572 0.83037 0.78605 1.20221 1.21210 1.20229 1.21147 0.92934 0.90929 1.51389 0.92714 1.19018 0.93788 0.90724 0.97770 1.21918 0.99887 0.93270 1.00920 1.21773 0.91681 0.84597 1.02589 1.46170 1.10707 1.05954 1.74374 1.16989 0.87285 0.81650 0.77592 1.90885 1.14630 1.84147 1.49837 1.20967 0.81059 0.96547 1.12760 1.21407 0.99277 0.90004 1.03459 1.20775 0.90446 0.99511 1.04916 1.20056 0.91923 0.87097 1.19201 1.17313 0.85118 0.74833 0.74155 1.93272 1.90320 1.95854 1.35700 1.93235 1.95472 1.44758 1.80954 1.93227 1.81137 1.60396 1.81183 1.41701 1.06449 1.07231 1.55704 0.73691 0.92784 0.96167 0.96181 0.92672 0.92659 0.91165 0.91158 0.77416 0.81947 0.82415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.34 9.11 -34.44 -0.31 -14.65 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.24 5.27 -26.73 -0.14 -2.38 16 11 C 0.12 1.88 5.67 -4.04 -0.02 1.86 16 12 N -0.72 -9.37 5.55 -61.61 -0.34 -9.71 16 13 C 0.58 8.04 7.79 -12.85 -0.10 7.94 16 14 O -0.52 -9.12 16.88 5.19 0.09 -9.03 16 15 C 0.00 0.04 7.06 -81.98 -0.58 -0.54 16 16 C -0.12 -1.16 10.65 -39.12 -0.42 -1.57 16 17 C -0.13 -1.10 10.36 -39.98 -0.41 -1.51 16 18 C -0.07 -0.57 6.48 -81.96 -0.53 -1.11 16 19 C 0.54 4.41 3.54 36.00 0.13 4.54 16 20 F -0.17 -1.48 17.30 2.25 0.04 -1.45 16 21 F -0.16 -1.33 17.00 2.25 0.04 -1.29 16 22 F -0.18 -1.50 17.25 2.25 0.04 -1.46 16 23 N -0.51 -4.44 5.93 -5.70 -0.03 -4.48 16 24 H 0.42 2.73 8.19 -40.82 -0.33 2.39 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.39 3.91 7.60 -40.82 -0.31 3.60 16 33 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 317.23 15.07 4.78 4.78 Total: -1.00 -31.60 317.23 -5.87 -37.47 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -3.57 Total: 0.11 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -2.63 Total: -5.43 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.36 Total: -39.81 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.12 Total: -4.20 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.60 -5.87 -37.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448907284.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.744 kcal (2) G-P(sol) polarization free energy of solvation -31.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds