Wall clock time and date at job start Tue Mar 31 2020 06:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00399 * 2 1 4 4 H 1.48490 * 109.47198 * 239.99926 * 3 2 1 5 5 H 1.48506 * 109.46650 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47066 * 119.99634 * 3 2 1 7 7 C 1.37884 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99838 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00200 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46861 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46969 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47035 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99873 * 179.97438 * 12 11 10 14 14 O 1.21695 * 119.99811 * 0.02562 * 13 12 11 15 15 C 1.46676 * 119.99963 * 180.02562 * 13 12 11 16 16 C 1.37874 * 126.23372 * 180.02562 * 15 13 12 17 17 C 1.39834 * 107.08703 * 180.02562 * 16 15 13 18 18 C 1.35453 * 107.86224 * 359.97438 * 17 16 15 19 19 C 1.50693 * 125.56124 * 179.97438 * 18 17 16 20 20 F 1.39902 * 109.47273 * 270.02252 * 19 18 17 21 21 F 1.39900 * 109.47700 * 30.02425 * 19 18 17 22 22 F 1.39898 * 109.47165 * 150.02718 * 19 18 17 23 23 N 1.35530 * 108.87272 * 359.73297 * 18 17 16 24 24 H 0.97004 * 125.68193 * 180.30491 * 23 18 17 25 25 H 0.97002 * 119.99797 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.46824 * 60.00052 * 9 7 2 27 27 H 1.08996 * 109.46811 * 299.99879 * 9 7 2 28 28 H 1.09004 * 109.47298 * 60.00075 * 10 9 7 29 29 H 1.09004 * 109.47552 * 299.99947 * 10 9 7 30 30 H 1.09004 * 109.46930 * 59.99996 * 11 10 9 31 31 H 1.09000 * 109.47312 * 299.99939 * 11 10 9 32 32 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 33 33 H 1.08000 * 126.45472 * 0.04216 * 16 15 13 34 34 H 1.07999 * 126.06905 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 7 2.4322 -6.1007 -0.0005 13 6 1.9829 -7.3714 0.0004 14 8 0.7864 -7.5937 0.0013 15 6 2.9360 -8.4862 0.0004 16 6 2.6202 -9.8283 0.0008 17 6 3.8272 -10.5344 0.0011 18 6 4.8368 -9.6313 0.0004 19 6 6.3073 -9.9608 0.0011 20 9 6.7620 -10.0618 1.3202 21 9 6.5130 -11.1777 -0.6576 22 9 7.0123 -8.9484 -0.6588 23 7 4.3086 -8.3832 -0.0064 24 1 4.8137 -7.5551 -0.0125 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5567 -0.8902 27 1 0.6247 -2.5571 0.8897 28 1 2.8719 -3.6044 0.8895 29 1 2.8719 -3.6044 -0.8905 30 1 0.8531 -5.0451 -0.8897 31 1 0.8538 -5.0446 0.8903 32 1 3.3858 -5.9235 -0.0008 33 1 1.6277 -10.2541 0.0005 34 1 3.9353 -11.6090 0.0019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448907284.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:36 Heat of formation + Delta-G solvation = -180.944373 kcal Electronic energy + Delta-G solvation = -21927.807939 eV Core-core repulsion = 17831.001374 eV Total energy + Delta-G solvation = -4096.806565 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.27836 -48.81979 -48.75461 -42.65785 -40.36397 -37.07751 -35.29592 -33.32824 -32.36271 -31.74110 -28.85854 -27.01603 -25.11323 -23.26525 -22.41913 -21.88668 -21.47643 -20.42910 -19.63600 -19.32689 -18.58247 -18.39670 -16.94589 -16.91305 -16.44337 -15.94689 -15.82205 -15.60827 -15.53553 -15.24457 -15.17005 -14.91277 -14.90520 -14.86678 -14.40955 -14.27148 -13.91922 -13.75560 -13.54092 -13.18793 -12.73701 -12.59027 -12.44510 -11.74580 -11.70897 -11.34422 -11.15339 -10.55764 -10.35592 -10.31351 -9.72907 -8.20634 -6.32128 -0.02210 1.13154 1.24239 1.41276 1.43760 1.51663 1.81901 1.97754 2.14280 2.41319 2.58986 3.01615 3.13375 3.24505 3.62356 4.00618 4.06096 4.17225 4.17683 4.50592 4.67169 4.88688 4.90807 4.95768 5.12927 5.22489 5.29987 5.49811 5.54856 5.68998 5.82937 5.94365 6.20466 6.35720 6.85384 6.95703 7.37627 8.91187 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.023748 B = 0.002727 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.786637 B =10263.912427 C =11252.301768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.024 3.976 10 C -0.103 4.103 11 C 0.129 3.871 12 N -0.711 5.711 13 C 0.583 3.417 14 O -0.563 6.563 15 C -0.016 4.016 16 C -0.116 4.116 17 C -0.128 4.128 18 C -0.060 4.060 19 C 0.548 3.452 20 F -0.172 7.172 21 F -0.161 7.161 22 F -0.178 7.178 23 N -0.506 5.506 24 H 0.434 0.566 25 H 0.263 0.737 26 H -0.006 1.006 27 H -0.007 1.007 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.410 0.590 33 H 0.166 0.834 34 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.672 -22.866 -0.029 27.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.141 4.141 11 C 0.005 3.995 12 N -0.362 5.362 13 C 0.370 3.630 14 O -0.442 6.442 15 C -0.132 4.132 16 C -0.142 4.142 17 C -0.154 4.154 18 C -0.177 4.177 19 C 0.493 3.507 20 F -0.153 7.153 21 F -0.142 7.142 22 F -0.160 7.160 23 N -0.103 5.103 24 H 0.275 0.725 25 H 0.072 0.928 26 H 0.012 0.988 27 H 0.012 0.988 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.246 0.754 33 H 0.184 0.816 34 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 13.789 -22.703 -0.031 26.562 hybrid contribution 0.778 1.560 0.003 1.743 sum 14.567 -21.143 -0.028 25.675 Atomic orbital electron populations 1.70099 1.07913 1.27883 1.51560 1.26006 0.95726 1.03500 0.94778 0.85493 0.78216 0.78045 0.79248 1.19043 1.21226 1.19058 1.21660 0.93750 0.92062 1.50638 0.91546 1.18931 0.94435 0.92809 0.95235 1.21618 0.98530 0.91750 1.02218 1.21352 0.91748 0.84863 1.01488 1.45878 1.11122 1.05049 1.74118 1.17272 0.87195 0.82113 0.76380 1.90861 1.16630 1.84788 1.51890 1.20480 0.81583 0.95747 1.15385 1.21629 1.00209 0.89827 1.02571 1.21070 0.89451 1.00763 1.04113 1.20240 0.92328 0.87057 1.18100 1.17161 0.84669 0.74838 0.74029 1.93274 1.90295 1.95866 1.35887 1.93245 1.95421 1.44622 1.80898 1.93232 1.81114 1.60450 1.81184 1.41622 1.05614 1.07897 1.55183 0.72529 0.92787 0.98795 0.98809 0.91276 0.91262 0.92426 0.92421 0.75374 0.81604 0.79940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 3 Si 0.97 43.06 29.54 68.60 2.03 45.08 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 7 C -0.54 -29.60 9.11 25.60 0.23 -29.36 16 8 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.19 4.97 29.85 0.15 1.33 16 10 C -0.10 -3.73 5.27 30.59 0.16 -3.57 16 11 C 0.13 4.22 5.67 86.38 0.49 4.71 16 12 N -0.71 -17.80 5.55 -467.06 -2.59 -20.39 16 13 C 0.58 15.92 7.79 86.45 0.67 16.59 16 14 O -0.56 -20.08 16.88 -4.33 -0.07 -20.15 16 15 C -0.02 -0.32 7.06 40.35 0.28 -0.04 16 16 C -0.12 -2.14 10.65 22.57 0.24 -1.90 16 17 C -0.13 -1.83 10.36 22.01 0.23 -1.60 16 18 C -0.06 -0.89 6.48 41.34 0.27 -0.62 16 19 C 0.55 7.56 3.54 71.23 0.25 7.82 16 20 F -0.17 -2.59 17.30 44.97 0.78 -1.81 16 21 F -0.16 -2.21 17.00 44.97 0.76 -1.45 16 22 F -0.18 -2.58 17.25 44.97 0.78 -1.81 16 23 N -0.51 -7.66 5.93 -171.94 -1.02 -8.68 16 24 H 0.43 4.56 8.19 -92.71 -0.76 3.80 16 25 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 26 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 27 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 28 H 0.07 2.31 8.14 -2.38 -0.02 2.30 16 29 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.41 7.36 7.60 -92.71 -0.70 6.66 16 33 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 34 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -68.43 317.23 4.08 -64.35 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -0.30 Total: 7.19 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 3.44 Total: -6.31 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -3.33 Total: -85.09 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.07 Total: -20.15 kcal Atomic # 9 Polarization: -7.38 SS G_CDS: 2.32 Total: -5.07 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -68.43 4.08 -64.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448907284.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.595 kcal (2) G-P(sol) polarization free energy of solvation -68.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds