Wall clock time and date at job start Tue Mar 31 2020 07:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21697 * 119.99433 * 0.02562 * 14 13 3 16 16 C 1.46675 * 120.00438 * 180.02562 * 14 13 3 17 17 C 1.37873 * 126.23121 * 179.69173 * 16 14 13 18 18 C 1.39841 * 107.08348 * 179.84470 * 17 16 14 19 19 C 1.35457 * 107.86115 * 0.41720 * 18 17 16 20 20 C 1.50704 * 125.55935 * 179.72182 * 19 18 17 21 21 F 1.39900 * 109.46844 * 270.02210 * 20 19 18 22 22 F 1.39898 * 109.47504 * 30.02349 * 20 19 18 23 23 F 1.39896 * 109.46912 * 150.02572 * 20 19 18 24 24 N 1.35525 * 108.87484 * 359.73685 * 19 18 17 25 25 H 0.97001 * 125.67851 * 180.02562 * 24 19 18 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 31 31 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 32 32 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 33 33 H 1.07996 * 126.46295 * 359.97438 * 17 16 14 34 34 H 1.07993 * 126.06739 * 180.15728 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3422 2.6318 0.4311 16 6 0.0472 3.3207 2.6200 17 6 -1.1561 3.9434 2.8752 18 6 -1.0994 4.4249 4.1869 19 6 0.1143 4.1034 4.6954 20 6 0.6000 4.4378 6.0822 21 9 1.2390 5.6822 6.0650 22 9 -0.4890 4.4849 6.9591 23 9 1.5010 3.4568 6.5099 24 7 0.8205 3.4322 3.7533 25 1 1.7209 3.0875 3.8600 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8293 -0.0604 -2.9502 32 1 2.2719 2.1232 1.9977 33 1 -1.9869 4.0392 2.1919 34 1 -1.8824 4.9618 4.7015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450624475.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:48 Heat of formation + Delta-G solvation = -151.590431 kcal Electronic energy + Delta-G solvation = -23096.998964 eV Core-core repulsion = 19001.465282 eV Total energy + Delta-G solvation = -4095.533682 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.41609 -47.96208 -47.89161 -41.50553 -38.77763 -35.22905 -32.68010 -31.53376 -31.11451 -30.34265 -27.27782 -25.83518 -23.34292 -22.20846 -20.97466 -20.42973 -19.59673 -19.36491 -18.77554 -18.43780 -17.47672 -16.12287 -15.46076 -15.15511 -14.81225 -14.75782 -14.54589 -14.38648 -14.32321 -14.07304 -14.05444 -13.96826 -13.68829 -13.19380 -12.94162 -12.70017 -12.23532 -12.11719 -11.62655 -11.33960 -11.08898 -10.91391 -10.42478 -10.29979 -9.75733 -9.44215 -9.29926 -9.16748 -8.64087 -8.61023 -8.02271 -6.21872 -4.32314 1.21935 2.12543 2.36052 2.82044 3.18221 3.25797 3.27164 3.50349 3.73263 3.80938 3.90803 4.12403 4.27987 5.02868 5.07084 5.09951 5.27206 5.74365 5.92207 6.30788 6.34173 6.37200 6.56040 6.60420 6.91522 6.97648 7.10389 7.17936 7.27606 7.49992 7.59442 7.77298 8.06039 8.42285 8.62009 8.85530 9.34935 10.83380 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.020512 B = 0.004139 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.750531 B = 6762.957010 C = 7655.241757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.054 0.946 5 C -0.539 4.539 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.702 5.702 14 C 0.569 3.431 15 O -0.524 6.524 16 C 0.016 3.984 17 C -0.128 4.128 18 C -0.131 4.131 19 C -0.078 4.078 20 C 0.542 3.458 21 F -0.172 7.172 22 F -0.165 7.165 23 F -0.179 7.179 24 N -0.514 5.514 25 H 0.424 0.576 26 H 0.025 0.975 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.031 0.969 30 H 0.102 0.898 31 H 0.266 0.734 32 H 0.383 0.617 33 H 0.160 0.840 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.539 6.354 14.759 16.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.072 0.928 5 C -0.577 4.577 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.349 5.349 14 C 0.353 3.647 15 O -0.401 6.401 16 C -0.101 4.101 17 C -0.153 4.153 18 C -0.157 4.157 19 C -0.193 4.193 20 C 0.486 3.514 21 F -0.153 7.153 22 F -0.146 7.146 23 F -0.161 7.161 24 N -0.110 5.110 25 H 0.262 0.738 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.214 0.786 33 H 0.178 0.822 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.872 6.144 13.880 16.275 hybrid contribution 1.878 -0.149 0.656 1.995 sum -3.994 5.995 14.536 16.223 Atomic orbital electron populations 1.21858 0.98204 0.98335 1.01266 1.21952 0.92734 0.99531 1.02484 1.18899 0.94489 0.89308 0.80386 0.92822 1.21176 0.90447 1.39558 1.06530 0.92150 1.24872 0.98720 0.94635 0.95273 1.69884 1.35240 1.37241 1.09287 0.86438 0.84651 0.78460 0.77510 1.20495 1.20955 1.19882 1.46517 1.13965 1.55610 1.18841 1.16979 0.83323 0.79345 0.85084 1.90850 1.51432 1.59733 1.38053 1.21393 0.93517 1.07163 0.88050 1.21351 0.97095 1.00800 0.96082 1.20712 0.95366 1.03977 0.95642 1.19971 0.96792 1.11613 0.90972 1.17334 0.74969 0.74599 0.84449 1.93259 1.82296 1.43010 1.96774 1.93219 1.54468 1.96176 1.70774 1.93215 1.68867 1.62636 1.91362 1.41742 1.15732 1.43003 1.10537 0.73751 0.95612 0.92962 0.94345 0.94980 0.88035 0.92404 0.78562 0.82231 0.82799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.67 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.46 2.24 -69.08 -0.15 6.31 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 5 C -0.54 -13.60 8.73 -34.44 -0.30 -13.90 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.80 11.29 55.43 0.63 -23.17 16 9 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 N -0.70 -13.62 5.02 -56.25 -0.28 -13.90 16 14 C 0.57 10.74 6.35 -12.85 -0.08 10.66 16 15 O -0.52 -11.57 14.01 5.19 0.07 -11.50 16 16 C 0.02 0.24 7.06 -81.98 -0.58 -0.33 16 17 C -0.13 -1.72 10.65 -39.12 -0.42 -2.14 16 18 C -0.13 -1.48 10.36 -39.97 -0.41 -1.90 16 19 C -0.08 -0.90 6.48 -81.95 -0.53 -1.43 16 20 C 0.54 5.72 3.54 36.01 0.13 5.85 16 21 F -0.17 -1.89 17.30 2.25 0.04 -1.85 16 22 F -0.17 -1.69 17.00 2.25 0.04 -1.66 16 23 F -0.18 -1.93 17.26 2.25 0.04 -1.89 16 24 N -0.51 -6.33 5.93 -5.69 -0.03 -6.36 16 25 H 0.42 4.40 8.19 -40.82 -0.33 4.07 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 28 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 31 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.38 6.31 7.67 -40.82 -0.31 6.00 16 33 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 34 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 304.65 15.07 4.59 4.59 Total: -1.00 -28.34 304.65 -5.49 -33.82 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -3.28 Total: 7.96 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -2.27 Total: -1.00 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.31 Total: -43.43 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.07 Total: -11.50 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 0.12 Total: -5.39 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.34 -5.49 -33.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450624475.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.767 kcal (2) G-P(sol) polarization free energy of solvation -28.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds