Wall clock time and date at job start Tue Mar 31 2020 07:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21697 * 119.99433 * 0.02562 * 14 13 3 16 16 C 1.46675 * 120.00438 * 180.02562 * 14 13 3 17 17 C 1.37873 * 126.23121 * 179.69173 * 16 14 13 18 18 C 1.39841 * 107.08348 * 179.84470 * 17 16 14 19 19 C 1.35457 * 107.86115 * 0.41720 * 18 17 16 20 20 C 1.50704 * 125.55935 * 179.72182 * 19 18 17 21 21 F 1.39900 * 109.46844 * 270.02210 * 20 19 18 22 22 F 1.39898 * 109.47504 * 30.02349 * 20 19 18 23 23 F 1.39896 * 109.46912 * 150.02572 * 20 19 18 24 24 N 1.35525 * 108.87484 * 359.73685 * 19 18 17 25 25 H 0.97001 * 125.67851 * 180.02562 * 24 19 18 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 31 31 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 32 32 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 33 33 H 1.07996 * 126.46295 * 359.97438 * 17 16 14 34 34 H 1.07993 * 126.06739 * 180.15728 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3422 2.6318 0.4311 16 6 0.0472 3.3207 2.6200 17 6 -1.1561 3.9434 2.8752 18 6 -1.0994 4.4249 4.1869 19 6 0.1143 4.1034 4.6954 20 6 0.6000 4.4378 6.0822 21 9 1.2390 5.6822 6.0650 22 9 -0.4890 4.4849 6.9591 23 9 1.5010 3.4568 6.5099 24 7 0.8205 3.4322 3.7533 25 1 1.7209 3.0875 3.8600 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8293 -0.0604 -2.9502 32 1 2.2719 2.1232 1.9977 33 1 -1.9869 4.0392 2.1919 34 1 -1.8824 4.9618 4.7015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450624475.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:47 Heat of formation + Delta-G solvation = -169.356882 kcal Electronic energy + Delta-G solvation = -23097.769375 eV Core-core repulsion = 19001.465282 eV Total energy + Delta-G solvation = -4096.304093 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 2.99 seconds Orbital eigenvalues (eV) -51.26377 -48.80336 -48.73817 -42.58003 -40.32799 -37.00874 -34.44867 -33.11184 -32.28234 -31.54496 -29.07047 -26.98871 -25.09730 -23.56079 -22.07115 -21.60593 -21.23145 -20.64085 -19.62149 -19.37379 -18.81113 -17.80466 -17.23867 -16.54116 -16.21485 -15.71564 -15.70315 -15.46863 -15.25487 -15.17934 -15.03236 -14.89627 -14.88884 -14.62336 -14.33764 -14.01235 -13.73385 -13.49659 -13.18858 -13.15502 -12.93307 -12.69066 -12.20368 -12.09810 -11.62115 -11.10861 -11.04483 -10.56195 -10.26956 -9.90015 -9.58539 -8.18532 -6.36070 0.10030 1.18134 1.32750 1.44056 1.45088 1.54700 1.88412 2.26898 2.34036 2.49507 2.61635 3.04598 3.11590 3.26841 3.83873 4.07302 4.19505 4.48212 4.56089 4.71559 4.74919 4.98668 5.04388 5.21486 5.34092 5.41040 5.45548 5.55768 5.60356 5.75636 5.85562 6.02098 6.13049 6.69027 6.81569 7.24557 7.40260 8.86746 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.020512 B = 0.004139 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.750531 B = 6762.957010 C = 7655.241757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.006 0.994 5 C -0.551 4.551 6 H 0.071 0.929 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.266 1.266 13 N -0.700 5.700 14 C 0.571 3.429 15 O -0.563 6.563 16 C -0.012 4.012 17 C -0.122 4.122 18 C -0.126 4.126 19 C -0.066 4.066 20 C 0.550 3.450 21 F -0.172 7.172 22 F -0.159 7.159 23 F -0.179 7.179 24 N -0.507 5.507 25 H 0.431 0.569 26 H 0.046 0.954 27 H 0.029 0.971 28 H 0.043 0.957 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.266 0.734 32 H 0.398 0.602 33 H 0.164 0.836 34 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.177 6.987 17.084 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.024 0.976 5 C -0.589 4.589 6 H 0.089 0.911 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.191 1.191 13 N -0.348 5.348 14 C 0.358 3.642 15 O -0.443 6.443 16 C -0.129 4.129 17 C -0.148 4.148 18 C -0.152 4.152 19 C -0.183 4.183 20 C 0.495 3.505 21 F -0.153 7.153 22 F -0.141 7.141 23 F -0.160 7.160 24 N -0.104 5.104 25 H 0.272 0.728 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.232 0.768 33 H 0.181 0.819 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.491 6.784 16.250 18.446 hybrid contribution 1.703 -0.285 0.006 1.727 sum -3.788 6.500 16.256 17.912 Atomic orbital electron populations 1.21701 0.96849 0.99370 1.00391 1.21802 0.93865 0.98930 1.01479 1.18467 0.93850 0.89303 0.80836 0.97607 1.21529 0.91229 1.39285 1.06851 0.91096 1.25714 1.03121 0.94308 0.94989 1.70033 1.37033 1.38087 1.09809 0.85396 0.79277 0.78781 0.77182 1.19743 1.21271 1.19060 1.46211 1.14859 1.55779 1.17960 1.17357 0.82368 0.78508 0.85994 1.90824 1.52383 1.61152 1.39933 1.20732 0.94933 1.09567 0.87622 1.21581 0.96448 0.99699 0.97083 1.21040 0.95977 1.03556 0.94627 1.20264 0.96708 1.10151 0.91162 1.17108 0.75016 0.74507 0.83839 1.93267 1.82308 1.43018 1.96737 1.93238 1.54207 1.96140 1.70466 1.93225 1.68860 1.62645 1.91287 1.41657 1.16003 1.42894 1.09864 0.72832 0.93482 0.95154 0.93847 0.94061 0.90735 0.92500 0.76776 0.81851 0.79755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.47 8.51 71.98 0.61 -4.86 16 2 C -0.12 -5.79 5.45 30.60 0.17 -5.62 16 3 C 0.28 13.68 2.24 44.25 0.10 13.78 16 4 H 0.01 0.35 7.58 -2.39 -0.02 0.33 16 5 C -0.55 -27.99 8.73 25.60 0.22 -27.77 16 6 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 7 C 0.02 1.01 5.29 84.66 0.45 1.46 16 8 N -0.91 -50.60 11.29 21.45 0.24 -50.36 16 9 Si 0.97 40.87 29.54 68.60 2.03 42.89 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 13 N -0.70 -27.36 5.02 -450.08 -2.26 -29.61 16 14 C 0.57 21.77 6.35 86.45 0.55 22.32 16 15 O -0.56 -25.66 14.01 -4.34 -0.06 -25.72 16 16 C -0.01 -0.34 7.06 40.35 0.28 -0.06 16 17 C -0.12 -3.07 10.65 22.57 0.24 -2.83 16 18 C -0.13 -2.48 10.36 22.01 0.23 -2.25 16 19 C -0.07 -1.34 6.48 41.35 0.27 -1.08 16 20 C 0.55 9.97 3.54 71.24 0.25 10.22 16 21 F -0.17 -3.28 17.30 44.97 0.78 -2.50 16 22 F -0.16 -2.74 17.00 44.97 0.76 -1.98 16 23 F -0.18 -3.35 17.26 44.97 0.78 -2.57 16 24 N -0.51 -11.50 5.93 -171.93 -1.02 -12.52 16 25 H 0.43 8.14 8.19 -92.71 -0.76 7.38 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.03 1.41 7.84 -2.39 -0.02 1.40 16 28 H 0.04 1.82 5.64 -2.38 -0.01 1.80 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 3.98 5.95 -2.39 -0.01 3.96 16 31 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 32 H 0.40 12.90 7.67 -92.71 -0.71 12.19 16 33 H 0.16 3.93 8.06 -2.91 -0.02 3.90 16 34 H 0.19 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -61.77 304.65 4.33 -57.44 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -0.29 Total: 21.63 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 3.37 Total: 3.30 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -3.04 Total: -92.49 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.06 Total: -25.72 kcal Atomic # 9 Polarization: -9.37 SS G_CDS: 2.32 Total: -7.05 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Total: -61.77 4.33 -57.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450624475.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.918 kcal (2) G-P(sol) polarization free energy of solvation -61.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.99 seconds