Wall clock time and date at job start Tue Mar 31 2020 08:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00463 * 2 1 4 4 H 1.48497 * 109.47167 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46907 * 300.00315 * 3 2 1 6 6 H 1.48497 * 109.47141 * 59.99867 * 3 2 1 7 7 C 1.37883 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00214 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99716 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47133 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99974 * 179.97438 * 11 10 9 13 13 O 1.21697 * 119.99921 * 359.97438 * 12 11 10 14 14 C 1.46429 * 119.99813 * 179.97438 * 12 11 10 15 15 C 1.34814 * 119.99424 * 180.02562 * 14 12 11 16 16 C 1.47212 * 119.99398 * 180.02562 * 15 14 12 17 17 C 1.39851 * 120.17131 * 15.73271 * 16 15 14 18 18 C 1.37869 * 119.82448 * 179.97438 * 17 16 15 19 19 C 1.38426 * 120.17223 * 359.97438 * 18 17 16 20 20 C 1.38376 * 120.34325 * 359.72203 * 19 18 17 21 21 C 1.37914 * 120.17149 * 0.55802 * 20 19 18 22 22 N 1.48013 * 120.08793 * 179.72377 * 21 20 19 23 23 O 1.21803 * 120.00309 * 37.26120 * 22 21 20 24 24 O 1.21805 * 120.00071 * 216.99132 * 22 21 20 25 25 H 0.97006 * 119.99726 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47248 * 59.99656 * 9 7 2 27 27 H 1.09006 * 109.47273 * 299.99960 * 9 7 2 28 28 H 1.08999 * 109.47262 * 59.99752 * 10 9 7 29 29 H 1.09000 * 109.47063 * 299.99690 * 10 9 7 30 30 H 0.97004 * 120.00366 * 359.97438 * 11 10 9 31 31 H 1.07999 * 120.00245 * 0.02562 * 14 12 11 32 32 H 1.07999 * 120.00330 * 359.97438 * 15 14 12 33 33 H 1.08001 * 120.08912 * 359.97438 * 17 16 15 34 34 H 1.08004 * 119.91390 * 179.97438 * 18 17 16 35 35 H 1.08007 * 119.82563 * 179.97438 * 19 18 17 36 36 H 1.07999 * 119.91423 * 180.27961 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5125 -4.9308 -0.0001 12 6 2.1864 -6.0981 -0.0007 13 8 3.4033 -6.0981 -0.0012 14 6 1.4541 -7.3661 -0.0008 15 6 2.1282 -8.5336 -0.0009 16 6 1.3920 -9.8085 -0.0015 17 6 0.0328 -9.8351 -0.3298 18 6 -0.6495 -11.0330 -0.3286 19 6 0.0073 -12.2075 -0.0042 20 6 1.3535 -12.1902 0.3157 21 6 2.0485 -10.9990 0.3246 22 7 3.4870 -10.9819 0.6729 23 8 4.2126 -11.8900 0.3093 24 8 3.9461 -10.0570 1.3191 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5570 -0.8896 27 1 0.6239 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6045 -0.8895 30 1 0.5425 -4.9308 0.0000 31 1 0.3741 -7.3661 -0.0007 32 1 3.2082 -8.5337 -0.0013 33 1 -0.4809 -8.9196 -0.5836 34 1 -1.6993 -11.0552 -0.5815 35 1 -0.5328 -13.1429 -0.0046 36 1 1.8601 -13.1113 0.5634 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492416583.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:56 Heat of formation + Delta-G solvation = -4.679155 kcal Electronic energy + Delta-G solvation = -21195.502961 eV Core-core repulsion = 17648.196570 eV Total energy + Delta-G solvation = -3547.306391 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.42691 -39.98434 -39.21961 -36.77019 -35.11548 -34.45096 -32.88736 -32.50602 -30.68329 -29.48365 -26.87600 -25.45172 -24.26282 -22.87947 -21.81457 -20.87588 -19.58789 -19.41964 -18.84692 -17.94015 -17.29451 -16.59252 -16.39184 -15.66850 -15.33382 -14.98245 -14.89721 -14.55017 -14.31554 -13.90959 -13.40505 -13.10431 -13.05686 -12.34258 -12.32261 -12.10776 -11.75442 -11.32840 -11.23453 -11.20088 -11.07840 -10.81556 -10.64915 -10.37799 -10.10447 -9.92674 -9.55679 -9.25533 -9.04663 -8.57877 -8.38891 -6.12379 -4.15009 -0.51923 0.09785 0.82210 1.11518 1.48272 2.82368 3.27132 3.34478 3.38326 3.43671 3.50027 3.84797 3.98915 4.12634 4.35453 4.39697 4.41942 4.64836 4.75312 5.01319 5.11975 5.25099 5.25405 5.32461 5.53238 5.76068 5.86914 6.02960 6.15610 6.30749 6.32589 6.69429 6.82421 7.39218 7.47681 7.57241 7.85815 7.91622 8.24092 8.53861 8.91203 9.50164 10.99303 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.030804 B = 0.002535 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.765556 B =11041.941578 C =11869.720415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.120 3.880 11 N -0.712 5.712 12 C 0.530 3.470 13 O -0.541 6.541 14 C -0.152 4.152 15 C -0.074 4.074 16 C 0.005 3.995 17 C -0.107 4.107 18 C -0.071 4.071 19 C -0.115 4.115 20 C -0.059 4.059 21 C -0.029 4.029 22 N 0.021 4.979 23 O -0.157 6.157 24 O -0.137 6.137 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.023 0.977 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.399 0.601 31 H 0.132 0.868 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.693 -26.026 -0.737 26.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.361 5.361 12 C 0.316 3.684 13 O -0.421 6.421 14 C -0.173 4.173 15 C -0.094 4.094 16 C 0.004 3.996 17 C -0.125 4.125 18 C -0.089 4.089 19 C -0.133 4.133 20 C -0.078 4.078 21 C -0.111 4.111 22 N 0.543 4.457 23 O -0.373 6.373 24 O -0.356 6.356 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.232 0.768 31 H 0.150 0.850 32 H 0.168 0.832 33 H 0.170 0.830 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.669 -25.877 -0.913 26.506 hybrid contribution 0.180 0.916 0.114 0.941 sum -5.488 -24.961 -0.799 25.570 Atomic orbital electron populations 1.69962 1.06108 1.26799 1.50497 1.24999 0.94903 0.99466 0.94949 0.86449 0.80213 0.83258 0.77624 1.19534 1.20931 1.20905 1.21093 0.93336 0.90334 1.51220 0.92127 1.19335 0.94191 0.91135 0.97862 1.21789 0.96121 0.81233 1.01088 1.46254 1.10542 1.06548 1.72784 1.18210 0.87679 0.84331 0.78134 1.90835 1.13440 1.87811 1.50006 1.23262 1.00429 0.92868 1.00701 1.22424 1.01431 0.89509 0.96034 1.18869 0.93651 0.91429 0.95640 1.21565 0.91602 0.99891 0.99444 1.21553 1.01077 0.91848 0.94382 1.21305 0.92940 0.99714 0.99358 1.20928 0.94847 0.96073 0.95977 1.21203 0.81434 0.96462 1.11983 1.43595 1.03099 1.00109 0.98888 1.94547 1.56873 1.29806 1.56029 1.94627 1.78344 1.26864 1.35812 0.92888 0.95929 0.95879 0.92231 0.92316 0.76751 0.85008 0.83180 0.83003 0.83604 0.83466 0.83282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.15 16 10 C 0.12 2.52 5.61 -4.04 -0.02 2.50 16 11 N -0.71 -12.06 5.55 -61.70 -0.34 -12.41 16 12 C 0.53 8.95 7.74 -12.96 -0.10 8.85 16 13 O -0.54 -11.44 16.23 5.19 0.08 -11.36 16 14 C -0.15 -1.83 9.36 -37.50 -0.35 -2.18 16 15 C -0.07 -0.92 8.45 -37.15 -0.31 -1.24 16 16 C 0.01 0.05 5.83 -105.06 -0.61 -0.56 16 17 C -0.11 -0.69 9.35 -39.11 -0.37 -1.05 16 18 C -0.07 -0.30 10.03 -39.65 -0.40 -0.70 16 19 C -0.11 -0.50 10.04 -39.46 -0.40 -0.90 16 20 C -0.06 -0.41 9.65 -39.65 -0.38 -0.80 16 21 C -0.03 -0.29 6.52 -79.48 -0.52 -0.81 16 22 N 0.02 0.27 4.27 34.19 0.15 0.42 16 23 O -0.16 -2.11 18.94 -29.46 -0.56 -2.67 16 24 O -0.14 -2.07 16.54 -29.46 -0.49 -2.56 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.40 5.58 8.45 -40.82 -0.35 5.23 16 31 H 0.13 1.05 6.35 -52.49 -0.33 0.72 16 32 H 0.15 2.27 5.80 -52.49 -0.30 1.97 16 33 H 0.15 0.67 6.46 -52.49 -0.34 0.33 16 34 H 0.15 0.20 8.06 -52.48 -0.42 -0.23 16 35 H 0.15 0.21 8.06 -52.48 -0.42 -0.22 16 36 H 0.15 0.81 8.01 -52.49 -0.42 0.39 16 LS Contribution 327.73 15.07 4.94 4.94 Total: -1.00 -34.19 327.73 -8.34 -42.53 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -3.82 Total: -0.14 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -4.01 Total: -9.87 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.54 Total: -37.13 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.96 Total: -16.58 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.19 -8.34 -42.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492416583.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.848 kcal (2) G-P(sol) polarization free energy of solvation -34.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds