Wall clock time and date at job start Tue Mar 31 2020 08:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00463 * 2 1 4 4 H 1.48497 * 109.47167 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46907 * 300.00315 * 3 2 1 6 6 H 1.48497 * 109.47141 * 59.99867 * 3 2 1 7 7 C 1.37883 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00214 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99716 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47133 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99974 * 179.97438 * 11 10 9 13 13 O 1.21697 * 119.99921 * 359.97438 * 12 11 10 14 14 C 1.46429 * 119.99813 * 179.97438 * 12 11 10 15 15 C 1.34814 * 119.99424 * 180.02562 * 14 12 11 16 16 C 1.47212 * 119.99398 * 180.02562 * 15 14 12 17 17 C 1.39851 * 120.17131 * 15.73271 * 16 15 14 18 18 C 1.37869 * 119.82448 * 179.97438 * 17 16 15 19 19 C 1.38426 * 120.17223 * 359.97438 * 18 17 16 20 20 C 1.38376 * 120.34325 * 359.72203 * 19 18 17 21 21 C 1.37914 * 120.17149 * 0.55802 * 20 19 18 22 22 N 1.48013 * 120.08793 * 179.72377 * 21 20 19 23 23 O 1.21803 * 120.00309 * 37.26120 * 22 21 20 24 24 O 1.21805 * 120.00071 * 216.99132 * 22 21 20 25 25 H 0.97006 * 119.99726 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47248 * 59.99656 * 9 7 2 27 27 H 1.09006 * 109.47273 * 299.99960 * 9 7 2 28 28 H 1.08999 * 109.47262 * 59.99752 * 10 9 7 29 29 H 1.09000 * 109.47063 * 299.99690 * 10 9 7 30 30 H 0.97004 * 120.00366 * 359.97438 * 11 10 9 31 31 H 1.07999 * 120.00245 * 0.02562 * 14 12 11 32 32 H 1.07999 * 120.00330 * 359.97438 * 15 14 12 33 33 H 1.08001 * 120.08912 * 359.97438 * 17 16 15 34 34 H 1.08004 * 119.91390 * 179.97438 * 18 17 16 35 35 H 1.08007 * 119.82563 * 179.97438 * 19 18 17 36 36 H 1.07999 * 119.91423 * 180.27961 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5125 -4.9308 -0.0001 12 6 2.1864 -6.0981 -0.0007 13 8 3.4033 -6.0981 -0.0012 14 6 1.4541 -7.3661 -0.0008 15 6 2.1282 -8.5336 -0.0009 16 6 1.3920 -9.8085 -0.0015 17 6 0.0328 -9.8351 -0.3298 18 6 -0.6495 -11.0330 -0.3286 19 6 0.0073 -12.2075 -0.0042 20 6 1.3535 -12.1902 0.3157 21 6 2.0485 -10.9990 0.3246 22 7 3.4870 -10.9819 0.6729 23 8 4.2126 -11.8900 0.3093 24 8 3.9461 -10.0570 1.3191 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5570 -0.8896 27 1 0.6239 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6045 -0.8895 30 1 0.5425 -4.9308 0.0000 31 1 0.3741 -7.3661 -0.0007 32 1 3.2082 -8.5337 -0.0013 33 1 -0.4809 -8.9196 -0.5836 34 1 -1.6993 -11.0552 -0.5815 35 1 -0.5328 -13.1429 -0.0046 36 1 1.8601 -13.1113 0.5634 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492416583.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:34:56 Heat of formation + Delta-G solvation = -26.888725 kcal Electronic energy + Delta-G solvation = -21196.466041 eV Core-core repulsion = 17648.196570 eV Total energy + Delta-G solvation = -3548.269470 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.34679 -40.91239 -40.30254 -37.77267 -36.72444 -35.39016 -34.85055 -33.10408 -31.94970 -30.82434 -27.81081 -26.98427 -25.33673 -23.73162 -23.07484 -22.39430 -20.72558 -20.22811 -19.78747 -18.93068 -18.60085 -18.14838 -17.31708 -16.74677 -16.49908 -16.48639 -16.08249 -15.67354 -15.18786 -14.91994 -14.72371 -14.41817 -14.27771 -13.67073 -13.24322 -13.20719 -12.97629 -12.80648 -12.59663 -12.52623 -12.33515 -12.28745 -12.13669 -11.71154 -11.59708 -11.47829 -11.05449 -10.62001 -10.61192 -10.14365 -9.68034 -8.25636 -6.35469 -1.33694 -0.59081 0.06878 0.32343 0.64443 1.40133 1.41557 1.54435 2.11021 2.16189 2.41023 2.43732 3.09363 3.17916 3.27785 3.64044 3.85717 3.90543 3.94016 4.06532 4.22667 4.46035 4.46243 4.54539 4.64969 4.83073 4.92465 5.01969 5.05774 5.12361 5.18706 5.24153 5.47057 5.51920 5.57005 5.77326 6.15137 6.32518 6.56516 6.77458 7.19114 7.33814 8.86355 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.030804 B = 0.002535 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.765556 B =11041.941578 C =11869.720415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.548 4.548 8 H 0.056 0.944 9 C 0.024 3.976 10 C 0.138 3.862 11 N -0.704 5.704 12 C 0.527 3.473 13 O -0.594 6.594 14 C -0.156 4.156 15 C -0.065 4.065 16 C -0.022 4.022 17 C -0.098 4.098 18 C -0.054 4.054 19 C -0.094 4.094 20 C -0.064 4.064 21 C -0.053 4.053 22 N 0.023 4.977 23 O -0.153 6.153 24 O -0.202 6.202 25 H 0.266 0.734 26 H 0.013 0.987 27 H 0.012 0.988 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.416 0.584 31 H 0.183 0.817 32 H 0.111 0.889 33 H 0.177 0.823 34 H 0.191 0.809 35 H 0.189 0.811 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.874 -27.882 -1.403 29.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.586 4.586 8 H 0.074 0.926 9 C -0.014 4.014 10 C 0.014 3.986 11 N -0.354 5.354 12 C 0.317 3.683 13 O -0.477 6.477 14 C -0.176 4.176 15 C -0.085 4.085 16 C -0.023 4.023 17 C -0.116 4.116 18 C -0.071 4.071 19 C -0.112 4.112 20 C -0.083 4.083 21 C -0.135 4.135 22 N 0.539 4.461 23 O -0.375 6.375 24 O -0.409 6.409 25 H 0.075 0.925 26 H 0.031 0.969 27 H 0.030 0.970 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.253 0.747 31 H 0.200 0.800 32 H 0.129 0.871 33 H 0.194 0.806 34 H 0.208 0.792 35 H 0.207 0.793 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.867 -27.666 -1.525 29.092 hybrid contribution 1.057 1.241 0.250 1.649 sum -7.810 -26.424 -1.275 27.584 Atomic orbital electron populations 1.70048 1.07408 1.27964 1.51007 1.25833 0.95817 1.02967 0.94400 0.85419 0.78895 0.78894 0.77980 1.19238 1.20094 1.20137 1.21495 0.93538 0.92056 1.51540 0.92570 1.19133 0.94136 0.91433 0.96652 1.21275 0.95223 0.82252 0.99850 1.45992 1.11263 1.05302 1.72837 1.18961 0.87261 0.85623 0.76458 1.90810 1.15996 1.88579 1.52328 1.23120 1.02202 0.89683 1.02594 1.22345 1.00085 0.91527 0.94573 1.18856 0.95190 0.89615 0.98683 1.21954 0.89664 1.02152 0.97875 1.22123 1.02852 0.90506 0.91634 1.21878 0.91432 1.01681 0.96198 1.21306 0.96127 0.95083 0.95810 1.21516 0.79206 0.98332 1.14463 1.44127 1.04663 0.99286 0.98003 1.94486 1.58288 1.29531 1.55168 1.94628 1.79724 1.28031 1.38480 0.92475 0.96888 0.96989 0.93659 0.93532 0.74727 0.80028 0.87074 0.80585 0.79225 0.79340 0.82130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.60 13.29 21.45 0.28 -53.32 16 2 C 0.01 0.49 5.46 84.66 0.46 0.95 16 3 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.55 -30.69 9.11 25.60 0.23 -30.46 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.02 1.19 5.09 29.85 0.15 1.34 16 10 C 0.14 6.00 5.61 86.38 0.48 6.48 16 11 N -0.70 -24.11 5.55 -467.34 -2.59 -26.71 16 12 C 0.53 18.36 7.74 86.38 0.67 19.03 16 13 O -0.59 -26.78 16.23 -4.34 -0.07 -26.85 16 14 C -0.16 -3.68 9.36 23.62 0.22 -3.46 16 15 C -0.07 -1.67 8.45 23.84 0.20 -1.47 16 16 C -0.02 -0.41 5.83 -20.15 -0.12 -0.52 16 17 C -0.10 -0.84 9.35 22.57 0.21 -0.63 16 18 C -0.05 -0.13 10.03 22.23 0.22 0.09 16 19 C -0.09 -0.30 10.04 22.35 0.22 -0.08 16 20 C -0.06 -0.71 9.65 22.23 0.21 -0.50 16 21 C -0.05 -1.06 6.52 36.68 0.24 -0.82 16 22 N 0.02 0.65 4.27 -45.74 -0.20 0.46 16 23 O -0.15 -4.30 18.94 18.88 0.36 -3.94 16 24 O -0.20 -6.85 16.54 18.88 0.31 -6.54 16 25 H 0.27 14.44 8.31 -92.70 -0.77 13.67 16 26 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.42 11.29 8.45 -92.71 -0.78 10.50 16 31 H 0.18 2.29 6.35 -2.91 -0.02 2.28 16 32 H 0.11 3.77 5.80 -2.91 -0.02 3.75 16 33 H 0.18 0.61 6.46 -2.91 -0.02 0.59 16 34 H 0.19 -1.04 8.06 -2.91 -0.02 -1.07 16 35 H 0.19 -0.84 8.06 -2.91 -0.02 -0.86 16 36 H 0.16 1.35 8.01 -2.91 -0.02 1.33 16 Total: -1.00 -80.44 327.73 3.88 -76.55 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 0.34 Total: 4.66 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 3.42 Total: -10.04 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -2.50 Total: -79.57 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: 0.60 Total: -37.33 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -80.44 3.88 -76.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492416583.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.666 kcal (2) G-P(sol) polarization free energy of solvation -80.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds