Wall clock time and date at job start Tue Mar 31 2020 08:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99899 * 2 1 4 4 H 1.48505 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47239 * 299.99895 * 3 2 1 6 6 H 1.48499 * 109.47027 * 60.00101 * 3 2 1 7 7 C 1.37880 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00119 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99795 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46996 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.47358 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00366 * 180.02562 * 11 10 9 13 13 O 1.21700 * 119.99556 * 0.02562 * 12 11 10 14 14 C 1.46427 * 120.00008 * 179.97438 * 12 11 10 15 15 C 1.34810 * 119.99651 * 173.28019 * 14 12 11 16 16 C 1.47209 * 120.00314 * 349.92847 * 15 14 12 17 17 C 1.39852 * 120.16688 * 314.61449 * 16 15 14 18 18 C 1.37869 * 119.82491 * 179.97438 * 17 16 15 19 19 C 1.38431 * 120.17171 * 0.02562 * 18 17 16 20 20 C 1.38379 * 120.34198 * 0.02562 * 19 18 17 21 21 C 1.37912 * 120.17244 * 359.69898 * 20 19 18 22 22 N 1.48018 * 120.08923 * 180.28030 * 21 20 19 23 23 O 1.21802 * 120.00013 * 354.21549 * 22 21 20 24 24 O 1.21802 * 119.99881 * 174.21396 * 22 21 20 25 25 H 0.96994 * 119.99782 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46465 * 60.00554 * 9 7 2 27 27 H 1.08994 * 109.47550 * 300.00819 * 9 7 2 28 28 H 1.09004 * 109.47101 * 60.00895 * 10 9 7 29 29 H 1.08999 * 109.47581 * 300.00267 * 10 9 7 30 30 H 0.97003 * 119.99521 * 0.02562 * 11 10 9 31 31 H 1.07997 * 120.00063 * 353.01007 * 14 12 11 32 32 H 1.07996 * 119.99775 * 169.92784 * 15 14 12 33 33 H 1.08001 * 120.09065 * 359.95674 * 17 16 15 34 34 H 1.07996 * 119.91741 * 179.97438 * 18 17 16 35 35 H 1.07997 * 119.82800 * 179.97438 * 19 18 17 36 36 H 1.07998 * 119.91040 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0980 -0.0007 13 8 3.4037 -6.0979 0.0006 14 6 1.4546 -7.3661 -0.0008 15 6 2.1218 -8.5296 -0.1370 16 6 3.5469 -8.5221 -0.5060 17 6 4.0011 -7.6958 -1.5388 18 6 5.3373 -7.6939 -1.8781 19 6 6.2285 -8.5076 -1.1998 20 6 5.7865 -9.3287 -0.1775 21 6 4.4539 -9.3376 0.1775 22 7 3.9842 -10.2120 1.2755 23 8 4.7519 -11.0013 1.7963 24 8 2.8300 -10.1423 1.6582 25 1 -0.4849 0.8400 -0.0004 26 1 0.6242 -2.5566 -0.8904 27 1 0.6247 -2.5571 0.8895 28 1 2.8719 -3.6044 0.8896 29 1 2.8720 -3.6043 -0.8905 30 1 0.5428 -4.9308 -0.0019 31 1 0.3806 -7.3696 0.1127 32 1 1.6108 -9.4672 0.0246 33 1 3.3069 -7.0609 -2.0694 34 1 5.6896 -7.0567 -2.6758 35 1 7.2740 -8.5020 -1.4705 36 1 6.4878 -9.9609 0.3468 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492416584.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:05 Heat of formation + Delta-G solvation = 4.796877 kcal Electronic energy + Delta-G solvation = -22020.864149 eV Core-core repulsion = 18473.968669 eV Total energy + Delta-G solvation = -3546.895479 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.25497 -40.11554 -38.82713 -36.68258 -35.19475 -33.99733 -32.95063 -32.04122 -30.60573 -29.42405 -26.59980 -25.34435 -23.94445 -22.51142 -22.02775 -20.94151 -19.76848 -19.00661 -18.65548 -17.64713 -17.33137 -16.51740 -15.94778 -15.66997 -15.19728 -15.07411 -14.64452 -14.44899 -14.22878 -13.54313 -13.23598 -13.14361 -12.76522 -12.36212 -12.32011 -11.74083 -11.56955 -11.28976 -11.23887 -11.14518 -11.11419 -10.70043 -10.44867 -10.35079 -9.88630 -9.66546 -9.55628 -9.32012 -8.64087 -8.54287 -8.43529 -6.16171 -4.19456 -0.26373 0.52633 1.32886 1.37875 1.51221 3.23353 3.26661 3.31171 3.35205 3.38143 3.61514 4.13255 4.26837 4.36040 4.54929 4.76291 4.85630 4.95649 5.01082 5.21098 5.23839 5.48712 5.58059 5.72924 5.89649 5.98620 6.05911 6.15228 6.22313 6.28514 6.45198 6.61687 6.75839 7.42862 7.52273 7.61520 7.81235 7.86250 8.18983 8.46702 8.86575 9.45907 10.95397 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.026230 B = 0.003119 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.230825 B = 8974.740466 C = 9495.789097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.709 5.709 12 C 0.525 3.475 13 O -0.547 6.547 14 C -0.177 4.177 15 C -0.053 4.053 16 C 0.016 3.984 17 C -0.039 4.039 18 C -0.079 4.079 19 C -0.112 4.112 20 C -0.073 4.073 21 C -0.037 4.037 22 N 0.035 4.965 23 O -0.172 6.172 24 O -0.163 6.163 25 H 0.262 0.738 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.400 0.600 31 H 0.142 0.858 32 H 0.154 0.846 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.334 -18.937 -4.666 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.001 4.001 11 N -0.357 5.357 12 C 0.313 3.687 13 O -0.428 6.428 14 C -0.198 4.198 15 C -0.072 4.072 16 C 0.014 3.986 17 C -0.058 4.058 18 C -0.097 4.097 19 C -0.130 4.130 20 C -0.092 4.092 21 C -0.121 4.121 22 N 0.552 4.448 23 O -0.385 6.385 24 O -0.377 6.377 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.234 0.766 31 H 0.160 0.840 32 H 0.172 0.828 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.263 -18.346 -5.167 20.397 hybrid contribution -0.287 0.883 0.496 1.052 sum 6.976 -17.463 -4.671 19.376 Atomic orbital electron populations 1.69959 1.06094 1.26862 1.50258 1.25001 0.94902 0.99460 0.94914 0.86457 0.80127 0.83302 0.77687 1.19603 1.20886 1.20876 1.21065 0.93234 0.90352 1.51493 0.92240 1.19334 0.94190 0.91123 0.97926 1.21761 0.96100 0.81423 1.00827 1.46352 1.10729 1.06617 1.72017 1.18512 0.87773 0.84721 0.77735 1.90824 1.13454 1.87451 1.51082 1.23242 1.00840 0.92086 1.03612 1.22442 0.91223 0.99203 0.94370 1.18794 0.93333 0.92464 0.93969 1.21204 0.96492 0.93628 0.94455 1.21432 0.92972 0.96622 0.98678 1.21193 1.00670 0.95922 0.95258 1.20819 0.92707 0.98684 0.96962 1.21151 0.95582 1.00524 0.94815 1.43587 1.00458 0.99968 1.00829 1.94514 1.52721 1.33170 1.58088 1.94492 1.03117 1.74417 1.65694 0.92824 0.95886 0.95885 0.92446 0.92433 0.76593 0.83997 0.82843 0.84352 0.84216 0.84000 0.83399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.13 9.11 -34.44 -0.31 -14.45 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 10 C 0.12 2.43 5.61 -4.04 -0.02 2.40 16 11 N -0.71 -11.40 5.55 -61.70 -0.34 -11.74 16 12 C 0.52 8.09 6.85 -12.97 -0.09 8.00 16 13 O -0.55 -9.85 12.16 5.19 0.06 -9.78 16 14 C -0.18 -2.06 9.93 -37.50 -0.37 -2.43 16 15 C -0.05 -0.61 7.92 -37.15 -0.29 -0.90 16 16 C 0.02 0.20 4.49 -105.06 -0.47 -0.27 16 17 C -0.04 -0.46 6.61 -39.11 -0.26 -0.72 16 18 C -0.08 -0.78 10.03 -39.65 -0.40 -1.18 16 19 C -0.11 -1.01 10.04 -39.46 -0.40 -1.41 16 20 C -0.07 -0.78 9.55 -39.65 -0.38 -1.16 16 21 C -0.04 -0.49 6.87 -79.48 -0.55 -1.03 16 22 N 0.04 0.51 4.45 34.19 0.15 0.66 16 23 O -0.17 -2.51 18.46 -29.46 -0.54 -3.06 16 24 O -0.16 -2.40 15.84 -29.46 -0.47 -2.86 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.40 5.51 8.45 -40.82 -0.35 5.17 16 31 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.15 1.51 6.82 -52.49 -0.36 1.16 16 33 H 0.14 1.59 7.13 -52.49 -0.37 1.22 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.15 1.34 7.62 -52.49 -0.40 0.94 16 LS Contribution 320.98 15.07 4.84 4.84 Total: -1.00 -32.07 320.98 -8.34 -40.42 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -3.98 Total: 1.93 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -3.78 Total: -11.47 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.55 Total: -35.95 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.95 Total: -15.70 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.07 -8.34 -40.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492416584.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.215 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds