Wall clock time and date at job start Tue Mar 31 2020 08:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99899 * 2 1 4 4 H 1.48505 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47239 * 299.99895 * 3 2 1 6 6 H 1.48499 * 109.47027 * 60.00101 * 3 2 1 7 7 C 1.37880 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00119 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99795 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46996 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.47358 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00366 * 180.02562 * 11 10 9 13 13 O 1.21700 * 119.99556 * 0.02562 * 12 11 10 14 14 C 1.46427 * 120.00008 * 179.97438 * 12 11 10 15 15 C 1.34810 * 119.99651 * 173.28019 * 14 12 11 16 16 C 1.47209 * 120.00314 * 349.92847 * 15 14 12 17 17 C 1.39852 * 120.16688 * 314.61449 * 16 15 14 18 18 C 1.37869 * 119.82491 * 179.97438 * 17 16 15 19 19 C 1.38431 * 120.17171 * 0.02562 * 18 17 16 20 20 C 1.38379 * 120.34198 * 0.02562 * 19 18 17 21 21 C 1.37912 * 120.17244 * 359.69898 * 20 19 18 22 22 N 1.48018 * 120.08923 * 180.28030 * 21 20 19 23 23 O 1.21802 * 120.00013 * 354.21549 * 22 21 20 24 24 O 1.21802 * 119.99881 * 174.21396 * 22 21 20 25 25 H 0.96994 * 119.99782 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46465 * 60.00554 * 9 7 2 27 27 H 1.08994 * 109.47550 * 300.00819 * 9 7 2 28 28 H 1.09004 * 109.47101 * 60.00895 * 10 9 7 29 29 H 1.08999 * 109.47581 * 300.00267 * 10 9 7 30 30 H 0.97003 * 119.99521 * 0.02562 * 11 10 9 31 31 H 1.07997 * 120.00063 * 353.01007 * 14 12 11 32 32 H 1.07996 * 119.99775 * 169.92784 * 15 14 12 33 33 H 1.08001 * 120.09065 * 359.95674 * 17 16 15 34 34 H 1.07996 * 119.91741 * 179.97438 * 18 17 16 35 35 H 1.07997 * 119.82800 * 179.97438 * 19 18 17 36 36 H 1.07998 * 119.91040 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0980 -0.0007 13 8 3.4037 -6.0979 0.0006 14 6 1.4546 -7.3661 -0.0008 15 6 2.1218 -8.5296 -0.1370 16 6 3.5469 -8.5221 -0.5060 17 6 4.0011 -7.6958 -1.5388 18 6 5.3373 -7.6939 -1.8781 19 6 6.2285 -8.5076 -1.1998 20 6 5.7865 -9.3287 -0.1775 21 6 4.4539 -9.3376 0.1775 22 7 3.9842 -10.2120 1.2755 23 8 4.7519 -11.0013 1.7963 24 8 2.8300 -10.1423 1.6582 25 1 -0.4849 0.8400 -0.0004 26 1 0.6242 -2.5566 -0.8904 27 1 0.6247 -2.5571 0.8895 28 1 2.8719 -3.6044 0.8896 29 1 2.8720 -3.6043 -0.8905 30 1 0.5428 -4.9308 -0.0019 31 1 0.3806 -7.3696 0.1127 32 1 1.6108 -9.4672 0.0246 33 1 3.3069 -7.0609 -2.0694 34 1 5.6896 -7.0567 -2.6758 35 1 7.2740 -8.5020 -1.4705 36 1 6.4878 -9.9609 0.3468 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492416584.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:04 Heat of formation + Delta-G solvation = -14.225866 kcal Electronic energy + Delta-G solvation = -22021.689037 eV Core-core repulsion = 18473.968669 eV Total energy + Delta-G solvation = -3547.720367 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -43.30323 -41.20606 -39.86095 -37.76735 -36.70929 -35.02914 -34.81194 -32.92783 -31.96569 -30.76120 -27.67199 -26.95660 -25.11094 -23.51986 -23.28030 -22.48413 -20.85956 -20.05154 -19.72569 -18.72492 -18.62634 -18.18973 -17.07610 -16.74123 -16.52153 -16.26825 -16.20680 -15.61895 -15.29423 -14.71594 -14.62104 -14.26664 -14.15646 -13.69516 -13.22371 -13.17659 -12.97233 -12.69431 -12.55984 -12.50112 -12.32577 -12.26468 -12.19095 -11.69063 -11.47519 -11.21905 -10.82001 -10.63104 -10.49971 -9.92112 -9.49215 -8.25611 -6.35966 -1.25086 -0.36687 0.35730 0.40546 0.60553 1.39861 1.41428 1.53741 2.20594 2.29236 2.43630 2.46569 3.09529 3.29379 3.41811 3.76408 3.87777 4.00132 4.09728 4.18852 4.43680 4.46665 4.48450 4.67380 4.76138 4.84500 4.96677 5.01693 5.15155 5.20367 5.26632 5.29081 5.48266 5.57220 5.59495 5.77875 6.14574 6.52135 6.61303 6.77979 7.22686 7.33704 8.86332 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.026230 B = 0.003119 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.230825 B = 8974.740466 C = 9495.789097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.279 1.279 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.021 3.979 10 C 0.143 3.857 11 N -0.708 5.708 12 C 0.525 3.475 13 O -0.574 6.574 14 C -0.179 4.179 15 C -0.045 4.045 16 C -0.005 4.005 17 C -0.055 4.055 18 C -0.077 4.077 19 C -0.102 4.102 20 C -0.077 4.077 21 C -0.059 4.059 22 N 0.035 4.965 23 O -0.185 6.185 24 O -0.178 6.178 25 H 0.266 0.734 26 H 0.011 0.989 27 H 0.006 0.994 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.412 0.588 31 H 0.176 0.824 32 H 0.170 0.830 33 H 0.136 0.864 34 H 0.166 0.834 35 H 0.180 0.820 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.537 -19.063 -5.437 21.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.788 3.212 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.016 4.016 10 C 0.020 3.980 11 N -0.357 5.357 12 C 0.315 3.685 13 O -0.456 6.456 14 C -0.199 4.199 15 C -0.065 4.065 16 C -0.007 4.007 17 C -0.073 4.073 18 C -0.095 4.095 19 C -0.120 4.120 20 C -0.096 4.096 21 C -0.142 4.142 22 N 0.548 4.452 23 O -0.396 6.396 24 O -0.390 6.390 25 H 0.074 0.926 26 H 0.029 0.971 27 H 0.024 0.976 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.248 0.752 31 H 0.194 0.806 32 H 0.187 0.813 33 H 0.153 0.847 34 H 0.183 0.817 35 H 0.198 0.802 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.446 -18.510 -5.925 21.191 hybrid contribution -0.581 0.882 0.674 1.252 sum 7.865 -17.628 -5.252 20.004 Atomic orbital electron populations 1.70059 1.07533 1.27935 1.51068 1.25863 0.95773 1.03086 0.94469 0.85417 0.79014 0.78879 0.77864 1.18895 1.20157 1.20444 1.21492 0.93562 0.91937 1.51386 0.92300 1.19144 0.94289 0.91856 0.96352 1.21198 0.94920 0.82066 0.99857 1.46140 1.11229 1.05611 1.72717 1.19046 0.87612 0.85362 0.76530 1.90810 1.14830 1.87930 1.52048 1.23249 1.02200 0.89899 1.04582 1.22700 0.91004 0.99786 0.93013 1.19029 0.93975 0.93051 0.94636 1.21337 0.97579 0.93755 0.94660 1.21855 0.92314 0.96418 0.98895 1.21644 1.02331 0.94259 0.93768 1.21191 0.92051 0.99011 0.97360 1.21412 0.96753 1.01120 0.94963 1.43834 1.00306 1.00001 1.01073 1.94491 1.52697 1.33749 1.58669 1.94465 1.03504 1.74778 1.66274 0.92554 0.97088 0.97607 0.93948 0.92874 0.75214 0.80619 0.81257 0.84664 0.81664 0.80242 0.81949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.41 13.29 21.45 0.28 -53.13 16 2 C 0.01 0.38 5.46 84.66 0.46 0.84 16 3 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 6 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.55 -29.67 9.11 25.60 0.23 -29.44 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.02 1.02 5.09 29.85 0.15 1.17 16 10 C 0.14 5.78 5.61 86.38 0.48 6.27 16 11 N -0.71 -22.46 5.55 -467.34 -2.59 -25.05 16 12 C 0.52 15.79 6.85 86.38 0.59 16.38 16 13 O -0.57 -20.38 12.16 -4.35 -0.05 -20.43 16 14 C -0.18 -3.92 9.93 23.62 0.23 -3.69 16 15 C -0.05 -1.00 7.92 23.84 0.19 -0.82 16 16 C -0.01 -0.13 4.49 -20.15 -0.09 -0.22 16 17 C -0.05 -1.23 6.61 22.57 0.15 -1.08 16 18 C -0.08 -1.34 10.03 22.23 0.22 -1.12 16 19 C -0.10 -1.55 10.04 22.35 0.22 -1.32 16 20 C -0.08 -1.52 9.55 22.23 0.21 -1.31 16 21 C -0.06 -1.49 6.87 36.68 0.25 -1.24 16 22 N 0.04 1.00 4.45 -45.74 -0.20 0.80 16 23 O -0.18 -5.37 18.46 18.88 0.35 -5.02 16 24 O -0.18 -5.20 15.84 18.88 0.30 -4.91 16 25 H 0.27 14.38 8.31 -92.71 -0.77 13.60 16 26 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.41 11.09 8.45 -92.71 -0.78 10.30 16 31 H 0.18 2.55 8.06 -2.91 -0.02 2.52 16 32 H 0.17 3.14 6.82 -2.91 -0.02 3.12 16 33 H 0.14 3.03 7.13 -2.91 -0.02 3.01 16 34 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 36 H 0.16 2.63 7.62 -2.91 -0.02 2.61 16 Total: -1.00 -69.21 320.98 3.76 -65.45 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.33 Total: 13.07 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: 3.32 Total: -15.56 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -2.51 Total: -77.38 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: 0.59 Total: -30.35 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -69.21 3.76 -65.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492416584.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.224 kcal (2) G-P(sol) polarization free energy of solvation -69.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds