Wall clock time and date at job start Tue Mar 31 2020 06:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00030 * 2 1 4 4 H 1.48497 * 109.47320 * 269.99969 * 3 2 1 5 5 H 1.48495 * 109.47173 * 30.00213 * 3 2 1 6 6 H 1.48509 * 109.47110 * 150.00070 * 3 2 1 7 7 C 1.37880 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99703 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99722 * 179.97438 * 7 2 1 10 10 N 1.46904 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00029 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47107 * 179.97438 * 11 10 9 13 13 C 1.38579 * 120.81082 * 260.00112 * 12 11 10 14 14 C 1.38211 * 119.22246 * 179.97438 * 13 12 11 15 15 N 1.31883 * 120.88934 * 0.02562 * 14 13 12 16 16 C 1.31815 * 121.77386 * 359.97438 * 15 14 13 17 17 C 1.38740 * 120.68874 * 359.74164 * 16 15 14 18 18 O 1.35911 * 120.47705 * 180.28901 * 17 16 15 19 19 C 1.42895 * 117.00263 * 0.24629 * 18 17 16 20 20 C 1.52998 * 109.47312 * 180.02562 * 19 18 17 21 21 F 1.39900 * 109.47052 * 59.99922 * 20 19 18 22 22 F 1.39900 * 109.46957 * 179.97438 * 20 19 18 23 23 F 1.39899 * 109.47119 * 299.99824 * 20 19 18 24 24 H 0.97008 * 119.99801 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47455 * 60.00159 * 9 7 2 26 26 H 1.09003 * 109.47449 * 299.99392 * 9 7 2 27 27 H 1.00902 * 111.00190 * 56.03702 * 10 9 7 28 28 H 1.09002 * 109.47043 * 299.99792 * 11 10 9 29 29 H 1.09001 * 109.47354 * 59.99854 * 11 10 9 30 30 H 1.07999 * 120.38976 * 359.94810 * 13 12 11 31 31 H 1.08000 * 119.55739 * 180.02562 * 14 13 12 32 32 H 1.08005 * 119.64841 * 180.02562 * 16 15 14 33 33 H 1.09006 * 109.46900 * 300.00559 * 19 18 17 34 34 H 1.09003 * 109.47128 * 59.99421 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5790 -0.0022 11 6 5.4696 -2.6183 -0.0022 12 6 5.9339 -4.0520 -0.0027 13 6 6.3491 -4.6641 1.1692 14 6 6.7678 -5.9807 1.1310 15 7 6.7767 -6.6558 -0.0018 16 6 6.3898 -6.1105 -1.1378 17 6 5.9505 -4.7951 -1.1785 18 8 5.5470 -4.2391 -2.3511 19 6 5.5945 -5.0693 -3.5131 20 6 5.1070 -4.2760 -4.7271 21 9 5.9302 -3.1609 -4.9168 22 9 5.1541 -5.0888 -5.8649 23 9 3.7913 -3.8528 -4.5099 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6801 -0.8912 27 1 3.6252 -3.0949 -0.7837 28 1 5.8466 -2.1136 -0.8918 29 1 5.8466 -2.1150 0.8882 30 1 6.3459 -4.1186 2.1013 31 1 7.0922 -6.4631 2.0412 32 1 6.4106 -6.6954 -2.0456 33 1 6.6197 -5.3988 -3.6826 34 1 4.9535 -5.9384 -3.3652 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515234889.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:26 Heat of formation + Delta-G solvation = -174.663861 kcal Electronic energy + Delta-G solvation = -23052.664610 eV Core-core repulsion = 18956.130389 eV Total energy + Delta-G solvation = -4096.534221 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.22356 -48.76593 -48.71495 -41.85252 -39.35813 -37.43165 -34.91425 -33.44361 -31.96351 -30.67106 -29.59497 -26.47030 -25.26613 -23.71722 -23.20347 -22.76984 -20.08115 -19.75170 -19.15326 -19.06564 -18.62150 -17.67492 -17.21877 -17.07579 -16.50362 -16.04506 -15.66925 -15.61154 -15.45694 -15.34939 -15.14088 -14.87634 -14.85259 -14.63352 -14.61303 -14.42527 -14.26754 -13.69826 -13.25288 -12.86683 -12.82543 -12.75800 -12.54827 -12.38264 -11.82870 -11.52915 -10.84037 -10.55993 -10.51858 -9.56887 -9.22130 -8.31585 -6.36413 0.11125 0.17067 1.12824 1.33996 1.35487 1.46783 1.93963 2.32739 2.61005 2.73205 2.85990 3.02456 3.22562 3.41059 3.52190 3.66843 3.78970 3.83571 3.89799 3.97529 4.27948 4.48386 4.60190 4.69559 4.75248 4.82884 5.04163 5.23313 5.48218 5.50054 5.86760 5.95383 6.46373 6.57097 6.71348 6.91556 7.28105 8.85267 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.011835 B = 0.005526 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.347381 B = 5065.808160 C = 6828.995754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.951 3.049 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.246 1.246 7 C -0.529 4.529 8 H 0.035 0.965 9 C 0.176 3.824 10 N -0.678 5.678 11 C 0.100 3.900 12 C -0.073 4.073 13 C -0.115 4.115 14 C 0.066 3.934 15 N -0.469 5.469 16 C 0.021 3.979 17 C 0.071 3.929 18 O -0.316 6.316 19 C 0.009 3.991 20 C 0.462 3.538 21 F -0.186 7.186 22 F -0.166 7.166 23 F -0.189 7.189 24 H 0.268 0.732 25 H 0.033 0.967 26 H -0.017 1.017 27 H 0.333 0.667 28 H 0.034 0.966 29 H 0.090 0.910 30 H 0.162 0.838 31 H 0.189 0.811 32 H 0.187 0.813 33 H 0.145 0.855 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.497 -12.505 -5.766 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.169 1.169 7 C -0.567 4.567 8 H 0.053 0.947 9 C 0.047 3.953 10 N -0.308 5.308 11 C -0.029 4.029 12 C -0.082 4.082 13 C -0.135 4.135 14 C -0.091 4.091 15 N -0.179 5.179 16 C -0.137 4.137 17 C 0.024 3.976 18 O -0.228 6.228 19 C -0.067 4.067 20 C 0.408 3.592 21 F -0.167 7.167 22 F -0.148 7.148 23 F -0.170 7.170 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.000 1.000 27 H 0.150 0.850 28 H 0.052 0.948 29 H 0.109 0.891 30 H 0.179 0.821 31 H 0.206 0.794 32 H 0.204 0.796 33 H 0.163 0.837 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 18.491 -13.089 -5.162 23.236 hybrid contribution -0.577 1.981 -1.355 2.469 sum 17.914 -11.109 -6.517 22.063 Atomic orbital electron populations 1.70055 1.08192 1.28265 1.52192 1.25883 0.95662 1.03319 0.94045 0.85663 0.79555 0.78304 0.79093 1.19479 1.20379 1.16945 1.21295 0.91329 0.93398 1.50668 0.94692 1.19774 0.93771 0.86818 0.94924 1.60523 1.05891 1.14881 1.49518 1.20790 0.88750 0.91810 1.01512 1.19851 1.00101 0.96575 0.91657 1.22236 0.96890 0.96433 0.97974 1.23152 0.97648 0.91384 0.96925 1.67589 1.13352 1.37966 0.98990 1.23233 1.00649 0.91030 0.98772 1.19933 0.98269 0.94079 0.85292 1.86042 1.82090 1.40101 1.14611 1.24131 1.07797 0.93474 0.81275 1.20287 0.75349 0.78446 0.85136 1.93213 1.72222 1.55394 1.95876 1.93231 1.96193 1.72468 1.52865 1.93260 1.38172 1.90863 1.94747 0.92303 0.94871 0.99970 0.84974 0.94799 0.89135 0.82052 0.79388 0.79590 0.83731 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 2 C 0.01 0.51 5.47 84.66 0.46 0.97 16 3 Si 0.95 44.59 27.47 68.60 1.88 46.47 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.25 -10.63 6.54 99.48 0.65 -9.97 16 7 C -0.53 -31.40 9.87 25.60 0.25 -31.14 16 8 H 0.03 2.31 8.06 -2.91 -0.02 2.29 16 9 C 0.18 8.56 4.51 85.55 0.39 8.94 16 10 N -0.68 -28.37 6.48 -521.98 -3.38 -31.75 16 11 C 0.10 3.24 5.55 85.56 0.47 3.71 16 12 C -0.07 -1.97 5.44 -19.58 -0.11 -2.08 16 13 C -0.12 -2.52 9.78 22.34 0.22 -2.30 16 14 C 0.07 1.28 11.18 84.68 0.95 2.23 16 15 N -0.47 -10.25 10.36 -195.44 -2.02 -12.27 16 16 C 0.02 0.41 10.22 84.82 0.87 1.28 16 17 C 0.07 1.74 6.68 22.60 0.15 1.89 16 18 O -0.32 -7.83 9.40 -92.55 -0.87 -8.70 16 19 C 0.01 0.15 4.71 71.98 0.34 0.49 16 20 C 0.46 9.70 3.32 71.98 0.24 9.94 16 21 F -0.19 -4.55 17.26 44.97 0.78 -3.78 16 22 F -0.17 -3.04 17.32 44.97 0.78 -2.26 16 23 F -0.19 -5.37 17.26 44.97 0.78 -4.59 16 24 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 25 H 0.03 1.58 7.20 -2.39 -0.02 1.57 16 26 H -0.02 -0.84 7.57 -2.39 -0.02 -0.86 16 27 H 0.33 14.45 8.72 -89.69 -0.78 13.67 16 28 H 0.03 1.13 7.94 -2.39 -0.02 1.11 16 29 H 0.09 2.67 8.04 -2.39 -0.02 2.65 16 30 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 31 H 0.19 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.19 2.29 6.32 -2.91 -0.02 2.27 16 33 H 0.15 1.20 7.67 -2.38 -0.02 1.18 16 34 H 0.14 1.45 7.69 -2.39 -0.02 1.43 16 Total: -1.00 -73.48 310.60 2.78 -70.69 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.31 Total: 12.04 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 4.23 Total: -6.07 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -5.11 Total: -103.82 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.87 Total: -8.70 kcal Atomic # 9 Polarization: -12.96 SS G_CDS: 2.33 Total: -10.63 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.47 kcal Total: -73.48 2.78 -70.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515234889.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.970 kcal (2) G-P(sol) polarization free energy of solvation -73.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds