Wall clock time and date at job start Tue Mar 31 2020 08:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86797 * 120.00276 * 2 1 4 4 H 1.48494 * 109.47004 * 270.00226 * 3 2 1 5 5 H 1.48499 * 109.46948 * 30.00364 * 3 2 1 6 6 H 1.48497 * 109.47093 * 150.00215 * 3 2 1 7 7 C 1.38954 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00256 * 179.97438 * 7 2 1 9 9 N 1.37105 * 120.00113 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00179 * 179.97438 * 9 7 2 11 11 O 1.21289 * 119.99849 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00185 * 179.97438 * 10 9 7 13 13 C 1.53004 * 109.47302 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46931 * 179.97438 * 13 12 10 15 15 N 1.46501 * 109.46599 * 179.97438 * 14 13 12 16 16 C 1.34781 * 126.25444 * 90.03100 * 15 14 13 17 17 O 1.21603 * 125.27391 * 359.96284 * 16 15 14 18 18 O 1.34223 * 109.44954 * 179.70124 * 16 15 14 19 19 C 1.35558 * 109.18234 * 0.26015 * 18 16 15 20 20 C 1.38610 * 132.99569 * 180.02562 * 19 18 16 21 21 C 1.38123 * 119.91414 * 179.97438 * 20 19 18 22 22 C 1.38409 * 120.31157 * 359.97438 * 21 20 19 23 23 C 1.38129 * 120.18847 * 0.03537 * 22 21 20 24 24 C 1.38612 * 119.82112 * 359.96478 * 23 22 21 25 25 H 0.96995 * 119.99203 * 359.97438 * 1 2 3 26 26 H 0.96998 * 119.99518 * 359.97438 * 9 7 2 27 27 H 1.08996 * 109.47365 * 60.00011 * 12 10 9 28 28 H 1.09002 * 109.46972 * 300.00308 * 12 10 9 29 29 H 1.08997 * 109.46838 * 60.00377 * 13 12 10 30 30 H 1.08993 * 109.46664 * 300.00148 * 13 12 10 31 31 H 1.08997 * 109.46967 * 60.00559 * 14 13 12 32 32 H 1.09002 * 109.47241 * 300.00055 * 14 13 12 33 33 H 1.07995 * 120.04542 * 359.95709 * 20 19 18 34 34 H 1.08001 * 119.84344 * 179.97438 * 21 20 19 35 35 H 1.08001 * 119.90749 * 180.02562 * 22 21 20 36 36 H 1.07999 * 120.08807 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4458 2.6526 0.7001 6 1 3.5458 1.4400 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2035 -0.0010 9 7 1.3234 -2.3908 -0.0005 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5580 -0.0021 12 6 1.2437 -4.8630 -0.0010 13 6 2.2379 -6.0260 -0.0018 14 6 1.4727 -7.3509 -0.0005 15 7 2.4248 -8.4645 -0.0019 16 6 2.9439 -9.0706 1.0842 17 8 2.6953 -8.7777 2.2380 18 8 3.7734 -10.0514 0.6950 19 6 3.8096 -10.0929 -0.6595 20 6 4.4884 -10.8956 -1.5628 21 6 4.3223 -10.6985 -2.9197 22 6 3.4801 -9.7026 -3.3830 23 6 2.7996 -8.8975 -2.4904 24 6 2.9613 -9.0896 -1.1272 25 1 -0.4849 0.8401 0.0004 26 1 0.3534 -2.3907 0.0002 27 1 0.6160 -4.9205 -0.8902 28 1 0.6180 -4.9209 0.8897 29 1 2.8651 -5.9683 0.8878 30 1 2.8638 -5.9682 -0.8922 31 1 0.8452 -7.4089 -0.8898 32 1 0.8470 -7.4084 0.8902 33 1 5.1465 -11.6740 -1.2061 34 1 4.8521 -11.3244 -3.6226 35 1 3.3547 -9.5545 -4.4454 36 1 2.1431 -8.1207 -2.8537 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533811650.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:12 Heat of formation + Delta-G solvation = -84.745955 kcal Electronic energy + Delta-G solvation = -21911.232569 eV Core-core repulsion = 18360.454221 eV Total energy + Delta-G solvation = -3550.778348 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 3.65 seconds Orbital eigenvalues (eV) -44.35720 -40.24643 -39.68115 -38.66255 -37.44888 -36.07459 -34.39062 -33.26326 -31.65912 -30.55759 -28.93602 -26.78399 -24.52735 -24.08342 -23.79428 -22.08322 -20.97013 -19.90541 -19.62156 -18.82216 -18.52123 -17.69902 -17.63191 -16.68211 -16.60407 -16.16219 -15.78339 -15.70176 -15.28739 -14.93555 -14.78889 -14.70362 -14.50434 -14.21309 -13.56927 -13.27599 -13.13475 -13.04095 -12.85515 -12.71519 -12.44700 -12.28611 -12.13677 -12.06096 -11.79399 -11.64051 -11.54594 -10.41809 -10.04756 -9.80033 -9.20785 -8.49773 -5.98837 0.09181 0.15786 0.93584 1.26125 1.35930 1.40168 1.52825 1.80334 2.02484 2.28394 2.62590 3.15523 3.17933 3.32690 3.50233 3.86539 3.97365 4.03150 4.07527 4.21890 4.27926 4.37786 4.40805 4.51943 4.56581 4.74671 4.83747 4.97673 5.07363 5.19094 5.27306 5.35698 5.38683 5.45625 5.64282 5.97050 6.11068 6.44088 6.56122 7.09213 7.52963 8.08820 8.67450 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.026840 B = 0.002976 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.978908 B = 9406.369086 C = 9866.444115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.992 3.008 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.276 1.276 7 C -0.339 4.339 8 H 0.076 0.924 9 N -0.570 5.570 10 C 0.432 3.568 11 O -0.642 6.642 12 C -0.113 4.113 13 C -0.105 4.105 14 C 0.134 3.866 15 N -0.538 5.538 16 C 0.623 3.377 17 O -0.531 6.531 18 O -0.253 6.253 19 C -0.005 4.005 20 C -0.082 4.082 21 C -0.098 4.098 22 C -0.089 4.089 23 C -0.104 4.104 24 C 0.050 3.950 25 H 0.279 0.721 26 H 0.399 0.601 27 H 0.121 0.879 28 H 0.104 0.896 29 H 0.036 0.964 30 H 0.063 0.937 31 H 0.137 0.863 32 H 0.103 0.897 33 H 0.158 0.842 34 H 0.179 0.821 35 H 0.174 0.826 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.979 -22.065 -10.685 24.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.094 0.906 9 N -0.206 5.206 10 C 0.221 3.779 11 O -0.531 6.531 12 C -0.154 4.154 13 C -0.144 4.144 14 C 0.015 3.985 15 N -0.269 5.269 16 C 0.379 3.621 17 O -0.417 6.417 18 O -0.158 6.158 19 C -0.051 4.051 20 C -0.101 4.101 21 C -0.117 4.117 22 C -0.108 4.108 23 C -0.125 4.125 24 C -0.047 4.047 25 H 0.088 0.912 26 H 0.233 0.767 27 H 0.139 0.861 28 H 0.122 0.878 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.154 0.846 32 H 0.121 0.879 33 H 0.176 0.824 34 H 0.196 0.804 35 H 0.191 0.809 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.541 -21.828 -9.829 23.988 hybrid contribution -0.015 1.222 0.804 1.463 sum 1.526 -20.606 -9.025 22.548 Atomic orbital electron populations 1.69663 1.06752 1.29407 1.49986 1.26030 0.96564 1.02365 0.96093 0.84949 0.77820 0.76910 0.78798 1.19316 1.19403 1.20077 1.19673 0.92665 0.84273 1.50274 0.90619 1.41970 1.09441 1.04718 1.64515 1.21082 0.88128 0.86674 0.82024 1.90497 1.16513 1.88376 1.57706 1.21345 0.98350 0.89543 1.06119 1.21487 0.98006 0.92788 1.02160 1.21916 0.88873 0.80717 1.07018 1.45969 1.43090 1.33230 1.04612 1.18717 0.78847 0.78916 0.85659 1.91110 1.64909 1.67879 1.17836 1.84903 1.58442 1.49619 1.22873 1.19649 1.03980 1.01769 0.79705 1.20481 0.99339 0.98933 0.91327 1.21470 0.98358 0.98527 0.93318 1.21542 0.94443 0.93491 1.01280 1.20575 1.02546 1.02226 0.87123 1.18979 0.99071 0.95846 0.90815 0.91169 0.76667 0.86056 0.87774 0.94513 0.91783 0.84551 0.87889 0.82422 0.80361 0.80881 0.82927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.22 13.05 21.67 0.28 -48.93 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 3 Si 0.99 43.02 29.55 68.60 2.03 45.04 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.34 -19.44 9.68 84.04 0.81 -18.63 16 8 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 9 N -0.57 -29.20 5.29 -306.99 -1.62 -30.83 16 10 C 0.43 20.53 7.78 87.66 0.68 21.21 16 11 O -0.64 -36.43 15.56 -3.06 -0.05 -36.48 16 12 C -0.11 -3.55 5.70 29.85 0.17 -3.38 16 13 C -0.11 -3.25 4.83 30.60 0.15 -3.10 16 14 C 0.13 3.01 6.04 86.38 0.52 3.53 16 15 N -0.54 -14.31 2.81 -761.03 -2.14 -16.44 16 16 C 0.62 20.57 9.07 129.79 1.18 21.75 16 17 O -0.53 -21.04 17.81 19.18 0.34 -20.70 16 18 O -0.25 -7.54 10.72 8.59 0.09 -7.45 16 19 C -0.01 -0.12 7.35 22.65 0.17 0.04 16 20 C -0.08 -1.17 10.06 22.33 0.22 -0.94 16 21 C -0.10 -0.83 10.03 22.28 0.22 -0.61 16 22 C -0.09 -0.81 10.04 22.28 0.22 -0.59 16 23 C -0.10 -1.54 10.04 22.33 0.22 -1.32 16 24 C 0.05 1.10 6.84 38.31 0.26 1.36 16 25 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 26 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 27 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 28 H 0.10 2.87 8.14 -2.39 -0.02 2.86 16 29 H 0.04 1.41 8.10 -2.39 -0.02 1.39 16 30 H 0.06 2.09 8.10 -2.39 -0.02 2.07 16 31 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.10 2.26 8.07 -2.39 -0.02 2.24 16 33 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.18 0.17 8.06 -2.91 -0.02 0.15 16 35 H 0.17 0.42 8.06 -2.91 -0.02 0.40 16 36 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -80.15 323.34 4.63 -75.52 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.39 Total: 21.03 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: 5.30 Total: 19.24 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -3.48 Total: -96.20 kcal Atomic # 8 Polarization: -65.02 SS G_CDS: 0.39 Total: -64.63 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -80.15 4.63 -75.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533811650.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.227 kcal (2) G-P(sol) polarization free energy of solvation -80.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.65 seconds