Wall clock time and date at job start Tue Mar 31 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86807 * 119.99819 * 2 1 4 4 H 1.48498 * 109.46780 * 269.99860 * 3 2 1 5 5 H 1.48500 * 109.47133 * 29.99219 * 3 2 1 6 6 H 1.48500 * 109.47250 * 149.99784 * 3 2 1 7 7 C 1.40046 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00184 * 179.97438 * 7 2 1 9 9 C 1.46378 * 119.99944 * 0.02562 * 7 2 1 10 10 O 1.21692 * 119.99992 * 359.97438 * 9 7 2 11 11 N 1.34774 * 120.00325 * 179.97438 * 9 7 2 12 12 C 1.46492 * 120.00057 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47223 * 179.97438 * 12 11 9 14 14 N 1.30687 * 125.84673 * 275.04052 * 13 12 11 15 15 C 1.33989 * 109.77663 * 179.97438 * 14 13 12 16 16 C 1.48390 * 125.65417 * 180.25808 * 15 14 13 17 17 C 1.39351 * 120.09105 * 359.45080 * 16 15 14 18 18 C 1.37975 * 119.89880 * 179.74508 * 17 16 15 19 19 C 1.38550 * 120.09629 * 0.54450 * 18 17 16 20 20 F 1.35108 * 119.90349 * 179.72107 * 19 18 17 21 21 C 1.38542 * 120.18983 * 359.70812 * 19 18 17 22 22 C 1.37973 * 120.09521 * 0.02562 * 21 19 18 23 23 N 1.31504 * 108.69181 * 0.02562 * 15 14 13 24 24 N 1.34507 * 125.85750 * 94.99422 * 13 12 11 25 25 H 0.97007 * 126.74187 * 0.05722 * 24 13 12 26 26 H 0.97004 * 120.00407 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 28 28 H 1.09000 * 109.47657 * 59.99560 * 12 11 9 29 29 H 1.09003 * 109.47053 * 299.99063 * 12 11 9 30 30 H 1.07990 * 120.04761 * 0.02562 * 17 16 15 31 31 H 1.08000 * 119.94990 * 180.24823 * 18 17 16 32 32 H 1.08008 * 119.95240 * 179.97438 * 21 19 18 33 33 H 1.08006 * 120.04475 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4881 2.0464 -1.4001 5 1 1.4380 2.6528 0.6999 6 1 3.5382 1.4403 0.7001 7 6 2.0070 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4806 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2166 -4.9163 0.0000 13 6 2.1958 -6.0618 -0.0005 14 7 2.7639 -6.5826 -1.0560 15 6 3.5762 -7.5822 -0.6869 16 6 4.3989 -8.4111 -1.6024 17 6 4.3573 -8.1851 -2.9769 18 6 5.1279 -8.9547 -3.8240 19 6 5.9334 -9.9584 -3.3111 20 9 6.6820 -10.7134 -4.1447 21 6 5.9736 -10.1900 -1.9457 22 6 5.2106 -9.4215 -1.0909 23 7 3.5275 -7.7036 0.6216 24 7 2.6357 -6.7229 1.0852 25 1 2.3854 -6.5556 2.0073 26 1 -0.4851 0.8400 -0.0004 27 1 2.9190 -3.6476 0.0002 28 1 0.5901 -4.9739 -0.8902 29 1 0.5897 -4.9743 0.8898 30 1 3.7265 -7.4057 -3.3779 31 1 5.0994 -8.7775 -4.8890 32 1 6.6027 -10.9738 -1.5500 33 1 5.2429 -9.6024 -0.0266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548122701.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:06 Heat of formation + Delta-G solvation = 24.322502 kcal Electronic energy + Delta-G solvation = -20916.765937 eV Core-core repulsion = 17279.549598 eV Total energy + Delta-G solvation = -3637.216339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 9.22 seconds Orbital eigenvalues (eV) -49.15935 -42.17284 -39.08097 -37.43321 -34.04453 -32.99130 -32.46616 -31.70172 -31.21965 -29.85029 -27.36384 -25.36324 -23.98343 -23.19532 -21.24834 -20.61397 -19.87720 -18.28328 -17.85420 -17.24292 -16.36195 -16.11555 -15.88714 -15.71095 -15.37280 -14.68632 -14.44255 -14.07037 -13.88134 -13.81425 -13.47758 -13.05027 -12.72789 -12.54819 -12.37236 -12.01275 -11.54601 -11.30906 -11.25397 -10.99772 -10.57565 -10.49327 -10.30862 -10.12377 -9.87836 -9.39858 -8.93894 -8.62220 -7.78316 -7.77631 -6.29010 -4.74844 0.50130 0.98361 1.60091 2.51047 2.72524 3.10029 3.17327 3.20367 3.56255 3.70285 3.97032 4.04987 4.34286 4.47435 4.55396 4.60876 4.74423 4.87534 5.01469 5.18107 5.50151 5.60188 5.67184 5.79770 5.85746 5.92976 6.04911 6.10566 6.27011 6.28622 6.56814 6.96218 7.34898 7.69096 7.85479 7.98827 8.19749 8.92782 9.31889 10.45974 10.64328 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.025407 B = 0.002812 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.790583 B = 9954.154923 C =10530.013682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.910 3.090 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.557 3.443 10 O -0.577 6.577 11 N -0.761 5.761 12 C 0.207 3.793 13 C 0.296 3.704 14 N -0.519 5.519 15 C 0.260 3.740 16 C -0.018 4.018 17 C -0.045 4.045 18 C -0.157 4.157 19 C 0.108 3.892 20 F -0.139 7.139 21 C -0.159 4.159 22 C -0.057 4.057 23 N -0.307 5.307 24 N -0.471 5.471 25 H 0.444 0.556 26 H 0.270 0.730 27 H 0.384 0.616 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.149 0.851 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.993 -17.031 -2.039 19.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.133 4.133 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.578 4.578 8 H 0.087 0.913 9 C 0.362 3.638 10 O -0.460 6.460 11 N -0.419 5.419 12 C 0.080 3.920 13 C 0.017 3.983 14 N -0.248 5.248 15 C -0.019 4.019 16 C -0.021 4.021 17 C -0.066 4.066 18 C -0.176 4.176 19 C 0.088 3.912 20 F -0.118 7.118 21 C -0.178 4.178 22 C -0.077 4.077 23 N -0.137 5.137 24 N -0.190 5.190 25 H 0.291 0.709 26 H 0.081 0.919 27 H 0.216 0.784 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.167 0.833 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.247 -17.360 -2.008 19.771 hybrid contribution 0.794 0.838 0.549 1.278 sum 10.041 -16.522 -1.459 19.389 Atomic orbital electron populations 1.70003 1.07073 1.27527 1.34820 1.25707 0.94662 1.00368 0.92531 0.86331 0.80097 0.81153 0.78964 1.19616 1.20402 1.18894 1.20830 0.93663 0.88996 1.54298 0.91279 1.18259 0.87205 0.81955 0.76417 1.90622 1.13930 1.86381 1.55025 1.46220 1.08850 1.03454 1.83416 1.19420 0.89732 0.79085 1.03782 1.24754 0.95860 0.95400 0.82272 1.70531 1.13341 1.11502 1.29427 1.22158 0.96238 0.94419 0.89120 1.17480 0.97410 0.95804 0.91403 1.21176 0.96278 0.97737 0.91368 1.21121 0.98458 0.96519 1.01470 1.17879 0.93226 0.92117 0.87951 1.91509 1.74355 1.74511 1.71400 1.21030 1.02740 1.02598 0.91388 1.21051 0.93372 0.92743 1.00573 1.78105 1.12715 1.11234 1.11654 1.48028 1.34171 1.25928 1.10827 0.70915 0.91924 0.78406 0.89089 0.90625 0.83304 0.84051 0.84245 0.84120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.17 11.83 55.55 0.66 -21.51 16 2 C 0.09 2.36 5.50 -17.37 -0.10 2.26 16 3 Si 0.91 19.53 29.56 -169.99 -5.02 14.50 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.54 -14.68 9.54 -35.63 -0.34 -15.02 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.31 16 9 C 0.56 14.97 7.75 -12.99 -0.10 14.87 16 10 O -0.58 -17.66 15.02 5.20 0.08 -17.58 16 11 N -0.76 -15.89 5.54 -62.90 -0.35 -16.23 16 12 C 0.21 3.60 6.30 -5.20 -0.03 3.57 16 13 C 0.30 4.52 7.59 -155.74 -1.18 3.34 16 14 N -0.52 -8.35 10.82 -8.56 -0.09 -8.45 16 15 C 0.26 3.81 7.77 -156.62 -1.22 2.59 16 16 C -0.02 -0.22 5.88 -104.89 -0.62 -0.84 16 17 C -0.05 -0.50 9.68 -39.26 -0.38 -0.88 16 18 C -0.16 -1.50 10.01 -39.56 -0.40 -1.90 16 19 C 0.11 1.06 7.30 -39.35 -0.29 0.77 16 20 F -0.14 -1.42 17.26 2.25 0.04 -1.38 16 21 C -0.16 -1.43 10.01 -39.57 -0.40 -1.83 16 22 C -0.06 -0.58 9.68 -39.27 -0.38 -0.96 16 23 N -0.31 -4.35 12.43 32.10 0.40 -3.95 16 24 N -0.47 -6.16 7.44 32.61 0.24 -5.92 16 25 H 0.44 4.43 8.96 -182.34 -1.63 2.80 16 26 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 27 H 0.38 7.39 8.44 -40.82 -0.34 7.05 16 28 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.15 1.66 7.83 -52.49 -0.41 1.25 16 31 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 33 H 0.14 1.30 7.83 -52.48 -0.41 0.89 16 LS Contribution 309.84 15.07 4.67 4.67 Total: -1.00 -33.60 309.84 -8.84 -42.45 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -4.04 Total: 7.41 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: -5.42 Total: 5.98 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 0.86 Total: -56.06 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.08 Total: -17.58 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.60 -8.84 -42.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548122701.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.770 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.22 seconds