Wall clock time and date at job start Tue Mar 31 2020 06:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86807 * 119.99819 * 2 1 4 4 H 1.48498 * 109.46780 * 269.99860 * 3 2 1 5 5 H 1.48500 * 109.47133 * 29.99219 * 3 2 1 6 6 H 1.48500 * 109.47250 * 149.99784 * 3 2 1 7 7 C 1.40046 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00184 * 179.97438 * 7 2 1 9 9 C 1.46378 * 119.99944 * 0.02562 * 7 2 1 10 10 O 1.21692 * 119.99992 * 359.97438 * 9 7 2 11 11 N 1.34774 * 120.00325 * 179.97438 * 9 7 2 12 12 C 1.46492 * 120.00057 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47223 * 179.97438 * 12 11 9 14 14 N 1.30687 * 125.84673 * 275.04052 * 13 12 11 15 15 C 1.33989 * 109.77663 * 179.97438 * 14 13 12 16 16 C 1.48390 * 125.65417 * 180.25808 * 15 14 13 17 17 C 1.39351 * 120.09105 * 359.45080 * 16 15 14 18 18 C 1.37975 * 119.89880 * 179.74508 * 17 16 15 19 19 C 1.38550 * 120.09629 * 0.54450 * 18 17 16 20 20 F 1.35108 * 119.90349 * 179.72107 * 19 18 17 21 21 C 1.38542 * 120.18983 * 359.70812 * 19 18 17 22 22 C 1.37973 * 120.09521 * 0.02562 * 21 19 18 23 23 N 1.31504 * 108.69181 * 0.02562 * 15 14 13 24 24 N 1.34507 * 125.85750 * 94.99422 * 13 12 11 25 25 H 0.97007 * 126.74187 * 0.05722 * 24 13 12 26 26 H 0.97004 * 120.00407 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 28 28 H 1.09000 * 109.47657 * 59.99560 * 12 11 9 29 29 H 1.09003 * 109.47053 * 299.99063 * 12 11 9 30 30 H 1.07990 * 120.04761 * 0.02562 * 17 16 15 31 31 H 1.08000 * 119.94990 * 180.24823 * 18 17 16 32 32 H 1.08008 * 119.95240 * 179.97438 * 21 19 18 33 33 H 1.08006 * 120.04475 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4881 2.0464 -1.4001 5 1 1.4380 2.6528 0.6999 6 1 3.5382 1.4403 0.7001 7 6 2.0070 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4806 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2166 -4.9163 0.0000 13 6 2.1958 -6.0618 -0.0005 14 7 2.7639 -6.5826 -1.0560 15 6 3.5762 -7.5822 -0.6869 16 6 4.3989 -8.4111 -1.6024 17 6 4.3573 -8.1851 -2.9769 18 6 5.1279 -8.9547 -3.8240 19 6 5.9334 -9.9584 -3.3111 20 9 6.6820 -10.7134 -4.1447 21 6 5.9736 -10.1900 -1.9457 22 6 5.2106 -9.4215 -1.0909 23 7 3.5275 -7.7036 0.6216 24 7 2.6357 -6.7229 1.0852 25 1 2.3854 -6.5556 2.0073 26 1 -0.4851 0.8400 -0.0004 27 1 2.9190 -3.6476 0.0002 28 1 0.5901 -4.9739 -0.8902 29 1 0.5897 -4.9743 0.8898 30 1 3.7265 -7.4057 -3.3779 31 1 5.0994 -8.7775 -4.8890 32 1 6.6027 -10.9738 -1.5500 33 1 5.2429 -9.6024 -0.0266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548122701.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:59 Heat of formation + Delta-G solvation = 1.320531 kcal Electronic energy + Delta-G solvation = -20917.763377 eV Core-core repulsion = 17279.549598 eV Total energy + Delta-G solvation = -3638.213779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 8.34 seconds Orbital eigenvalues (eV) -49.94121 -43.33081 -39.90650 -39.38816 -35.70265 -34.55380 -34.08093 -32.89375 -32.12005 -30.92261 -29.10112 -27.09216 -24.91460 -24.02514 -22.45802 -21.82626 -21.59405 -19.71032 -18.86920 -18.61106 -17.52409 -17.24613 -17.04127 -16.89949 -16.60959 -16.18269 -15.85313 -15.51749 -15.27211 -14.70926 -14.54801 -14.25565 -14.06721 -13.74549 -13.56908 -13.28232 -13.14946 -13.03856 -12.71326 -12.62609 -12.08020 -12.01538 -11.54206 -11.29017 -11.08214 -10.93026 -10.15607 -9.92431 -9.63371 -9.49741 -8.30617 -6.86660 -0.39105 0.22452 0.45065 1.41241 1.43075 1.43929 1.58484 1.66161 2.25905 2.45363 2.58405 2.68782 3.14769 3.19087 3.29328 3.56230 3.61320 3.81732 3.90596 4.23102 4.29704 4.47349 4.58741 4.69955 4.92670 4.97698 5.00647 5.07514 5.29414 5.32543 5.38808 5.79320 5.82150 5.92741 6.02115 6.20780 6.83756 6.86553 7.40689 8.43038 8.64357 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.025407 B = 0.002812 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.790583 B = 9954.154923 C =10530.013682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.032 3.968 3 Si 0.996 3.004 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.251 1.251 7 C -0.569 4.569 8 H 0.086 0.914 9 C 0.546 3.454 10 O -0.623 6.623 11 N -0.748 5.748 12 C 0.215 3.785 13 C 0.293 3.707 14 N -0.539 5.539 15 C 0.255 3.745 16 C -0.041 4.041 17 C -0.053 4.053 18 C -0.153 4.153 19 C 0.105 3.895 20 F -0.140 7.140 21 C -0.150 4.150 22 C -0.054 4.054 23 N -0.307 5.307 24 N -0.455 5.455 25 H 0.458 0.542 26 H 0.276 0.724 27 H 0.394 0.606 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.142 0.858 31 H 0.160 0.840 32 H 0.166 0.834 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.123 -17.524 -1.919 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.184 4.184 3 Si 0.815 3.185 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.174 1.174 7 C -0.606 4.606 8 H 0.104 0.896 9 C 0.350 3.650 10 O -0.510 6.510 11 N -0.405 5.405 12 C 0.088 3.912 13 C 0.013 3.987 14 N -0.268 5.268 15 C -0.024 4.024 16 C -0.044 4.044 17 C -0.073 4.073 18 C -0.172 4.172 19 C 0.085 3.915 20 F -0.119 7.119 21 C -0.168 4.168 22 C -0.074 4.074 23 N -0.137 5.137 24 N -0.176 5.176 25 H 0.307 0.693 26 H 0.086 0.914 27 H 0.227 0.773 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.160 0.840 31 H 0.178 0.822 32 H 0.184 0.816 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 11.419 -17.904 -1.868 21.317 hybrid contribution 0.174 0.837 0.482 0.981 sum 11.593 -17.067 -1.386 20.679 Atomic orbital electron populations 1.70151 1.09354 1.29107 1.36062 1.26898 0.95518 1.04745 0.91225 0.85044 0.78771 0.75297 0.79369 1.18786 1.19730 1.17404 1.21363 0.94695 0.89868 1.54659 0.89632 1.18493 0.86785 0.83633 0.76050 1.90582 1.15802 1.87513 1.57092 1.45774 1.09238 1.03567 1.81911 1.19296 0.89895 0.78257 1.03745 1.24136 0.96118 0.95373 0.83034 1.70490 1.13933 1.12275 1.30125 1.22595 0.96088 0.94202 0.89550 1.17650 0.98439 0.96778 0.91564 1.21151 0.96778 0.98091 0.91264 1.21275 0.97679 0.95931 1.02272 1.18023 0.93099 0.92039 0.88354 1.91512 1.74349 1.74501 1.71500 1.21274 1.02152 1.02518 0.90883 1.21143 0.92924 0.92155 1.01227 1.78088 1.12746 1.11293 1.11579 1.47957 1.33355 1.25125 1.11133 0.69279 0.91401 0.77282 0.90411 0.89482 0.84022 0.82220 0.81641 0.83228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.26 11.83 21.83 0.26 -48.01 16 2 C 0.03 1.72 5.50 85.30 0.47 2.19 16 3 Si 1.00 39.66 29.56 68.60 2.03 41.69 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 7 C -0.57 -31.01 9.54 24.83 0.24 -30.77 16 8 H 0.09 4.21 7.85 -2.91 -0.02 4.19 16 9 C 0.55 29.90 7.75 86.36 0.67 30.57 16 10 O -0.62 -39.35 15.02 -4.32 -0.06 -39.41 16 11 N -0.75 -31.45 5.54 -471.15 -2.61 -34.07 16 12 C 0.21 7.53 6.30 85.64 0.54 8.07 16 13 C 0.29 8.82 7.59 138.24 1.05 9.87 16 14 N -0.54 -17.22 10.82 -180.99 -1.96 -19.18 16 15 C 0.25 7.28 7.77 137.46 1.07 8.35 16 16 C -0.04 -0.98 5.88 -20.04 -0.12 -1.09 16 17 C -0.05 -1.13 9.68 22.48 0.22 -0.91 16 18 C -0.15 -2.69 10.01 22.28 0.22 -2.47 16 19 C 0.10 1.83 7.30 22.42 0.16 2.00 16 20 F -0.14 -2.54 17.26 44.97 0.78 -1.76 16 21 C -0.15 -2.32 10.01 22.28 0.22 -2.10 16 22 C -0.05 -1.01 9.68 22.47 0.22 -0.79 16 23 N -0.31 -8.31 12.43 -52.35 -0.65 -8.96 16 24 N -0.46 -11.42 7.44 -50.74 -0.38 -11.80 16 25 H 0.46 8.51 8.96 -213.10 -1.91 6.60 16 26 H 0.28 14.75 8.29 -92.71 -0.77 13.98 16 27 H 0.39 15.04 8.44 -92.71 -0.78 14.26 16 28 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 29 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.14 3.18 7.83 -2.92 -0.02 3.16 16 31 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.15 2.46 7.83 -2.91 -0.02 2.44 16 Total: -1.00 -73.03 309.84 0.86 -72.17 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: -1.50 Total: 26.41 kcal Atomic # 6 Polarization: 17.96 SS G_CDS: 4.96 Total: 22.92 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -5.34 Total: -122.01 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -0.06 Total: -39.41 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.78 Total: -1.76 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Total: -73.03 0.86 -72.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548122701.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.490 kcal (2) G-P(sol) polarization free energy of solvation -73.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.34 seconds