Wall clock time and date at job start Tue Mar 31 2020 06:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99929 * 2 1 4 4 H 1.48507 * 109.47417 * 269.99748 * 3 2 1 5 5 H 1.48498 * 109.47265 * 30.00266 * 3 2 1 6 6 H 1.48505 * 109.46876 * 150.00343 * 3 2 1 7 7 C 1.37878 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00190 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99692 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.47472 * 180.02562 * 9 7 2 11 11 C 1.46895 * 111.00509 * 180.02562 * 10 9 7 12 12 C 1.50693 * 109.47244 * 179.97438 * 11 10 9 13 13 C 1.38424 * 120.44682 * 260.25171 * 12 11 10 14 14 C 1.38788 * 118.48619 * 180.24359 * 13 12 11 15 15 C 1.38091 * 119.28648 * 359.75515 * 14 13 12 16 16 N 1.31936 * 120.83342 * 359.97438 * 15 14 13 17 17 C 1.32276 * 121.64885 * 0.02562 * 16 15 14 18 18 O 1.35676 * 119.68324 * 179.97438 * 17 16 15 19 19 C 1.42898 * 117.00176 * 359.97438 * 18 17 16 20 20 C 1.52997 * 109.47319 * 180.02562 * 19 18 17 21 21 F 1.39900 * 109.47010 * 59.99934 * 20 19 18 22 22 F 1.39897 * 109.47422 * 180.02562 * 20 19 18 23 23 F 1.39905 * 109.47157 * 300.00325 * 20 19 18 24 24 H 0.96993 * 119.99718 * 359.97438 * 1 2 3 25 25 H 1.09010 * 109.46807 * 60.00245 * 9 7 2 26 26 H 1.08996 * 109.47874 * 300.00610 * 9 7 2 27 27 H 1.00904 * 110.99752 * 56.04714 * 10 9 7 28 28 H 1.09004 * 109.46785 * 60.00087 * 11 10 9 29 29 H 1.09001 * 109.47330 * 300.00740 * 11 10 9 30 30 H 1.07997 * 120.75502 * 359.97209 * 13 12 11 31 31 H 1.08000 * 120.35703 * 179.72430 * 14 13 12 32 32 H 1.08003 * 119.58226 * 180.02562 * 15 14 13 33 33 H 1.09002 * 109.47259 * 300.00620 * 19 18 17 34 34 H 1.09001 * 109.47074 * 60.00642 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 4.0012 -2.5791 -0.0022 11 6 5.4697 -2.6183 -0.0022 12 6 5.9339 -4.0520 -0.0027 13 6 6.3421 -4.6575 1.1732 14 6 6.7666 -5.9780 1.1250 15 6 6.7642 -6.6447 -0.0843 16 7 6.3640 -6.0422 -1.1878 17 6 5.9525 -4.7851 -1.1821 18 8 5.5501 -4.2047 -2.3405 19 6 5.5989 -5.0092 -3.5205 20 6 5.1116 -4.1897 -4.7171 21 9 5.9344 -3.0703 -4.8816 22 9 5.1588 -4.9775 -5.8722 23 9 3.7956 -3.7721 -4.4914 24 1 -0.4849 0.8400 0.0004 25 1 3.8752 -0.6805 0.8890 26 1 3.8746 -0.6800 -0.8910 27 1 3.6254 -3.0949 -0.7839 28 1 5.8465 -2.1151 0.8883 29 1 5.8467 -2.1136 -0.8917 30 1 6.3347 -4.1134 2.1060 31 1 7.0958 -6.4786 2.0236 32 1 7.0931 -7.6725 -0.1272 33 1 6.6243 -5.3343 -3.6965 34 1 4.9581 -5.8816 -3.3921 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566063482.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:10 Heat of formation + Delta-G solvation = -150.648858 kcal Electronic energy + Delta-G solvation = -23079.378806 eV Core-core repulsion = 18983.885953 eV Total energy + Delta-G solvation = -4095.492853 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.21270 -47.78907 -47.63046 -40.87314 -38.22548 -35.79584 -33.03974 -32.02468 -31.36285 -29.68989 -27.59712 -24.81556 -24.19312 -22.81006 -21.80548 -21.06949 -19.23265 -18.73554 -18.09324 -17.97405 -16.86034 -16.53142 -16.26562 -15.72445 -14.79122 -14.62428 -14.59668 -14.38523 -14.13282 -14.08187 -13.84266 -13.80677 -13.79696 -13.70355 -13.31998 -13.15476 -12.41502 -12.20610 -11.89554 -11.68159 -11.58890 -11.49263 -10.75697 -10.47224 -9.92570 -9.79913 -9.69230 -9.27195 -8.60598 -8.54366 -7.50246 -6.03444 -4.01291 1.03772 1.18014 2.04963 2.88885 3.30978 3.37839 3.40045 3.57362 3.63822 3.83916 4.02145 4.22711 4.44183 4.77009 4.78054 4.82677 4.89007 4.93719 5.18359 5.28175 5.34388 5.52840 5.67833 5.97360 6.03155 6.24878 6.33581 6.77090 6.92436 7.02634 7.60252 7.65308 7.87235 8.30029 8.66103 9.04568 9.58161 11.09935 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.011900 B = 0.005582 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.461795 B = 5014.685634 C = 6764.411986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.079 0.921 9 C 0.164 3.836 10 N -0.673 5.673 11 C 0.100 3.900 12 C -0.124 4.124 13 C -0.027 4.027 14 C -0.203 4.203 15 C 0.128 3.872 16 N -0.542 5.542 17 C 0.321 3.679 18 O -0.287 6.287 19 C 0.030 3.970 20 C 0.461 3.539 21 F -0.175 7.175 22 F -0.175 7.175 23 F -0.167 7.167 24 H 0.264 0.736 25 H 0.027 0.973 26 H -0.018 1.018 27 H 0.338 0.662 28 H 0.077 0.923 29 H 0.037 0.963 30 H 0.145 0.855 31 H 0.138 0.862 32 H 0.159 0.841 33 H 0.109 0.891 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.897 -13.177 -4.261 21.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.553 4.553 8 H 0.097 0.903 9 C 0.037 3.963 10 N -0.303 5.303 11 C -0.030 4.030 12 C -0.127 4.127 13 C -0.053 4.053 14 C -0.223 4.223 15 C -0.027 4.027 16 N -0.265 5.265 17 C 0.142 3.858 18 O -0.194 6.194 19 C -0.048 4.048 20 C 0.406 3.594 21 F -0.157 7.157 22 F -0.156 7.156 23 F -0.148 7.148 24 H 0.073 0.927 25 H 0.045 0.955 26 H -0.001 1.001 27 H 0.156 0.844 28 H 0.095 0.905 29 H 0.055 0.945 30 H 0.163 0.837 31 H 0.156 0.844 32 H 0.176 0.824 33 H 0.127 0.873 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 16.569 -13.264 -4.458 21.687 hybrid contribution 0.482 1.491 -0.455 1.632 sum 17.051 -11.773 -4.912 21.295 Atomic orbital electron populations 1.69900 1.06153 1.26854 1.51010 1.24896 0.94752 0.98918 0.94731 0.86823 0.80293 0.83857 0.78516 1.20285 1.21161 1.19160 1.21031 0.88846 0.94824 1.50577 0.90328 1.20028 0.96739 0.84700 0.94867 1.60640 1.03070 1.17021 1.49614 1.20746 0.91615 0.89513 1.01086 1.20039 1.03503 0.98616 0.90567 1.21411 0.92430 0.94152 0.97350 1.22005 1.04889 0.95823 0.99618 1.22306 0.94185 0.99293 0.86938 1.67219 1.16971 1.09340 1.33009 1.19483 0.92624 0.88525 0.85128 1.86261 1.81035 1.38489 1.13627 1.23545 1.05633 0.93509 0.82112 1.20117 0.76406 0.78840 0.84016 1.93229 1.72143 1.54312 1.96004 1.93208 1.96315 1.74345 1.51745 1.93299 1.36387 1.90711 1.94408 0.92660 0.95479 1.00068 0.84443 0.90453 0.94471 0.83717 0.84438 0.82401 0.87260 0.86935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.51 -15.03 9.87 -34.44 -0.34 -15.37 16 8 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 9 C 0.16 4.07 4.51 -4.98 -0.02 4.05 16 10 N -0.67 -14.29 6.48 -116.34 -0.75 -15.05 16 11 C 0.10 1.70 5.50 -4.98 -0.03 1.68 16 12 C -0.12 -1.81 5.42 -104.32 -0.57 -2.37 16 13 C -0.03 -0.32 9.81 -39.31 -0.39 -0.71 16 14 C -0.20 -1.94 10.11 -39.43 -0.40 -2.34 16 15 C 0.13 1.28 11.18 -17.56 -0.20 1.09 16 16 N -0.54 -6.81 9.22 -13.33 -0.12 -6.93 16 17 C 0.32 4.62 7.47 -17.12 -0.13 4.49 16 18 O -0.29 -4.22 9.23 -18.73 -0.17 -4.39 16 19 C 0.03 0.34 5.27 37.16 0.20 0.53 16 20 C 0.46 5.74 3.32 37.16 0.12 5.87 16 21 F -0.18 -2.41 17.26 2.25 0.04 -2.37 16 22 F -0.17 -1.97 17.32 2.25 0.04 -1.93 16 23 F -0.17 -2.54 17.26 2.25 0.04 -2.50 16 24 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 25 H 0.03 0.67 7.20 -51.92 -0.37 0.30 16 26 H -0.02 -0.46 7.57 -51.93 -0.39 -0.85 16 27 H 0.34 7.34 8.69 -39.29 -0.34 7.00 16 28 H 0.08 1.22 8.03 -51.93 -0.42 0.80 16 29 H 0.04 0.65 7.87 -51.93 -0.41 0.24 16 30 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 31 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.16 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.11 1.02 8.10 -51.93 -0.42 0.60 16 34 H 0.11 1.14 8.10 -51.93 -0.42 0.72 16 LS Contribution 312.96 15.07 4.72 4.72 Total: -1.00 -32.83 312.96 -5.59 -38.41 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -3.63 Total: 1.27 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.84 Total: -1.17 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.10 Total: -49.29 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.17 Total: -4.39 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.12 Total: -6.80 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.83 -5.59 -38.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566063482.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.236 kcal (2) G-P(sol) polarization free energy of solvation -32.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds