Wall clock time and date at job start Tue Mar 31 2020 06:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99929 * 2 1 4 4 H 1.48507 * 109.47417 * 269.99748 * 3 2 1 5 5 H 1.48498 * 109.47265 * 30.00266 * 3 2 1 6 6 H 1.48505 * 109.46876 * 150.00343 * 3 2 1 7 7 C 1.37878 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00190 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99692 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.47472 * 180.02562 * 9 7 2 11 11 C 1.46895 * 111.00509 * 180.02562 * 10 9 7 12 12 C 1.50693 * 109.47244 * 179.97438 * 11 10 9 13 13 C 1.38424 * 120.44682 * 260.25171 * 12 11 10 14 14 C 1.38788 * 118.48619 * 180.24359 * 13 12 11 15 15 C 1.38091 * 119.28648 * 359.75515 * 14 13 12 16 16 N 1.31936 * 120.83342 * 359.97438 * 15 14 13 17 17 C 1.32276 * 121.64885 * 0.02562 * 16 15 14 18 18 O 1.35676 * 119.68324 * 179.97438 * 17 16 15 19 19 C 1.42898 * 117.00176 * 359.97438 * 18 17 16 20 20 C 1.52997 * 109.47319 * 180.02562 * 19 18 17 21 21 F 1.39900 * 109.47010 * 59.99934 * 20 19 18 22 22 F 1.39897 * 109.47422 * 180.02562 * 20 19 18 23 23 F 1.39905 * 109.47157 * 300.00325 * 20 19 18 24 24 H 0.96993 * 119.99718 * 359.97438 * 1 2 3 25 25 H 1.09010 * 109.46807 * 60.00245 * 9 7 2 26 26 H 1.08996 * 109.47874 * 300.00610 * 9 7 2 27 27 H 1.00904 * 110.99752 * 56.04714 * 10 9 7 28 28 H 1.09004 * 109.46785 * 60.00087 * 11 10 9 29 29 H 1.09001 * 109.47330 * 300.00740 * 11 10 9 30 30 H 1.07997 * 120.75502 * 359.97209 * 13 12 11 31 31 H 1.08000 * 120.35703 * 179.72430 * 14 13 12 32 32 H 1.08003 * 119.58226 * 180.02562 * 15 14 13 33 33 H 1.09002 * 109.47259 * 300.00620 * 19 18 17 34 34 H 1.09001 * 109.47074 * 60.00642 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 4.0012 -2.5791 -0.0022 11 6 5.4697 -2.6183 -0.0022 12 6 5.9339 -4.0520 -0.0027 13 6 6.3421 -4.6575 1.1732 14 6 6.7666 -5.9780 1.1250 15 6 6.7642 -6.6447 -0.0843 16 7 6.3640 -6.0422 -1.1878 17 6 5.9525 -4.7851 -1.1821 18 8 5.5501 -4.2047 -2.3405 19 6 5.5989 -5.0092 -3.5205 20 6 5.1116 -4.1897 -4.7171 21 9 5.9344 -3.0703 -4.8816 22 9 5.1588 -4.9775 -5.8722 23 9 3.7956 -3.7721 -4.4914 24 1 -0.4849 0.8400 0.0004 25 1 3.8752 -0.6805 0.8890 26 1 3.8746 -0.6800 -0.8910 27 1 3.6254 -3.0949 -0.7839 28 1 5.8465 -2.1151 0.8883 29 1 5.8467 -2.1136 -0.8917 30 1 6.3347 -4.1134 2.1060 31 1 7.0958 -6.4786 2.0236 32 1 7.0931 -7.6725 -0.1272 33 1 6.6243 -5.3343 -3.6965 34 1 4.9581 -5.8816 -3.3921 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566063482.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:04 Heat of formation + Delta-G solvation = -175.489583 kcal Electronic energy + Delta-G solvation = -23080.455980 eV Core-core repulsion = 18983.885953 eV Total energy + Delta-G solvation = -4096.570027 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 6.80 seconds Orbital eigenvalues (eV) -51.25305 -48.79344 -48.74101 -41.80588 -39.16838 -37.35855 -34.85386 -33.42869 -32.42897 -30.75786 -29.29536 -26.22008 -25.18629 -23.76011 -23.21368 -22.74038 -20.20126 -19.78025 -19.12518 -19.03496 -18.87970 -17.49257 -17.26027 -17.00742 -16.24579 -15.92949 -15.67249 -15.63255 -15.45035 -15.33847 -15.17268 -14.90664 -14.88375 -14.70819 -14.56860 -14.29603 -14.11900 -13.70091 -13.15782 -13.04624 -12.80644 -12.64981 -12.50244 -12.20448 -11.81923 -11.50837 -10.84064 -10.77188 -10.66183 -9.53927 -9.17054 -8.31057 -6.35738 0.13695 0.30182 1.10565 1.34244 1.35804 1.47219 1.91209 2.33349 2.61230 2.74036 2.85261 3.02931 3.11512 3.29884 3.63140 3.85768 3.93312 3.93804 4.04914 4.12155 4.29806 4.58058 4.63967 4.76606 4.80870 5.04798 5.10014 5.33508 5.46367 5.50026 5.89523 6.02335 6.47242 6.59164 6.71941 6.78655 7.28754 8.85900 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.011900 B = 0.005582 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.461795 B = 5014.685634 C = 6764.411986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.951 3.049 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.246 1.246 7 C -0.528 4.528 8 H 0.034 0.966 9 C 0.175 3.825 10 N -0.679 5.679 11 C 0.106 3.894 12 C -0.155 4.155 13 C -0.030 4.030 14 C -0.192 4.192 15 C 0.130 3.870 16 N -0.550 5.550 17 C 0.304 3.696 18 O -0.313 6.313 19 C 0.034 3.966 20 C 0.462 3.538 21 F -0.184 7.184 22 F -0.166 7.166 23 F -0.188 7.188 24 H 0.268 0.732 25 H 0.034 0.966 26 H -0.019 1.019 27 H 0.331 0.669 28 H 0.089 0.911 29 H 0.029 0.971 30 H 0.160 0.840 31 H 0.176 0.824 32 H 0.197 0.803 33 H 0.132 0.868 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.488 -13.942 -3.334 24.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.169 1.169 7 C -0.567 4.567 8 H 0.052 0.948 9 C 0.047 3.953 10 N -0.308 5.308 11 C -0.023 4.023 12 C -0.158 4.158 13 C -0.056 4.056 14 C -0.211 4.211 15 C -0.025 4.025 16 N -0.274 5.274 17 C 0.127 3.873 18 O -0.221 6.221 19 C -0.043 4.043 20 C 0.407 3.593 21 F -0.166 7.166 22 F -0.147 7.147 23 F -0.169 7.169 24 H 0.077 0.923 25 H 0.052 0.948 26 H -0.001 1.001 27 H 0.148 0.852 28 H 0.108 0.892 29 H 0.047 0.953 30 H 0.177 0.823 31 H 0.193 0.807 32 H 0.214 0.786 33 H 0.150 0.850 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 19.183 -14.051 -3.530 24.039 hybrid contribution -0.317 1.532 -0.731 1.726 sum 18.866 -12.520 -4.260 23.040 Atomic orbital electron populations 1.70055 1.08186 1.28258 1.52255 1.25888 0.95674 1.03330 0.94044 0.85657 0.79565 0.78274 0.79082 1.19541 1.20301 1.16921 1.21303 0.91355 0.93385 1.50612 0.94753 1.19777 0.93754 0.86943 0.94870 1.60552 1.06215 1.14725 1.49348 1.20713 0.88488 0.91952 1.01174 1.19934 1.06209 0.97558 0.92066 1.21715 0.91684 0.95315 0.96871 1.22416 1.03050 0.94709 1.00933 1.23091 0.92321 1.00733 0.86400 1.67297 1.17326 1.08468 1.34281 1.19583 0.93526 0.89320 0.84897 1.86202 1.81454 1.39849 1.14604 1.23672 1.07078 0.92939 0.80646 1.20321 0.75385 0.78740 0.84827 1.93206 1.72241 1.54995 1.96110 1.93220 1.96200 1.73934 1.51394 1.93256 1.38025 1.91024 1.94601 0.92310 0.94820 1.00113 0.85231 0.89237 0.95315 0.82255 0.80654 0.78584 0.85042 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.62 13.96 21.45 0.30 -60.33 16 2 C 0.01 0.49 5.47 84.65 0.46 0.95 16 3 Si 0.95 45.11 27.47 68.60 1.88 46.99 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 7 C -0.53 -31.81 9.87 25.60 0.25 -31.55 16 8 H 0.03 2.30 8.06 -2.91 -0.02 2.28 16 9 C 0.18 8.70 4.51 85.56 0.39 9.08 16 10 N -0.68 -29.22 6.48 -521.99 -3.38 -32.60 16 11 C 0.11 3.56 5.50 85.56 0.47 4.03 16 12 C -0.15 -4.35 5.42 -19.67 -0.11 -4.45 16 13 C -0.03 -0.63 9.81 22.45 0.22 -0.41 16 14 C -0.19 -2.91 10.11 22.37 0.23 -2.68 16 15 C 0.13 2.12 11.18 84.64 0.95 3.06 16 16 N -0.55 -12.62 9.22 -308.93 -2.85 -15.46 16 17 C 0.30 8.49 7.47 84.78 0.63 9.13 16 18 O -0.31 -9.24 9.23 -89.93 -0.83 -10.07 16 19 C 0.03 0.74 5.27 71.98 0.38 1.12 16 20 C 0.46 11.55 3.32 71.98 0.24 11.79 16 21 F -0.18 -5.08 17.26 44.97 0.78 -4.31 16 22 F -0.17 -3.66 17.32 44.97 0.78 -2.88 16 23 F -0.19 -5.92 17.26 44.97 0.78 -5.14 16 24 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 25 H 0.03 1.63 7.20 -2.38 -0.02 1.62 16 26 H -0.02 -0.93 7.57 -2.39 -0.02 -0.95 16 27 H 0.33 14.93 8.69 -89.69 -0.78 14.15 16 28 H 0.09 2.71 8.03 -2.38 -0.02 2.69 16 29 H 0.03 1.00 7.87 -2.39 -0.02 0.98 16 30 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 31 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 32 H 0.20 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.13 2.27 8.10 -2.39 -0.02 2.25 16 34 H 0.12 2.42 8.10 -2.39 -0.02 2.40 16 Total: -1.00 -73.30 312.96 1.87 -71.42 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.31 Total: 12.31 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 4.11 Total: 0.07 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -5.93 Total: -108.39 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.83 Total: -10.07 kcal Atomic # 9 Polarization: -14.66 SS G_CDS: 2.33 Total: -12.33 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 46.99 kcal Total: -73.30 1.87 -71.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566063482.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.066 kcal (2) G-P(sol) polarization free energy of solvation -73.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.80 seconds