Wall clock time and date at job start Tue Mar 31 2020 06:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99919 * 2 1 4 4 H 1.48496 * 109.46831 * 270.00053 * 3 2 1 5 5 H 1.48494 * 109.46986 * 30.00070 * 3 2 1 6 6 H 1.48500 * 109.46823 * 150.00120 * 3 2 1 7 7 C 1.37879 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00578 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99833 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46937 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99842 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47357 * 179.97438 * 11 10 9 13 13 O 1.42903 * 109.46726 * 64.99864 * 12 11 10 14 14 C 1.35676 * 116.99635 * 179.97438 * 13 12 11 15 15 C 1.38922 * 119.68320 * 179.72662 * 14 13 12 16 16 C 1.38382 * 119.11201 * 179.75588 * 15 14 13 17 17 C 1.38834 * 118.48218 * 0.51010 * 16 15 14 18 18 C 1.50698 * 120.35286 * 179.75262 * 17 16 15 19 19 F 1.39897 * 109.47021 * 179.97438 * 18 17 16 20 20 F 1.39904 * 109.47004 * 299.97703 * 18 17 16 21 21 F 1.39900 * 109.47117 * 59.97984 * 18 17 16 22 22 C 1.38045 * 119.29294 * 359.73325 * 17 16 15 23 23 N 1.31970 * 120.82893 * 0.02562 * 22 17 16 24 24 H 0.96993 * 120.00026 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47131 * 60.00148 * 9 7 2 26 26 H 1.09003 * 109.47422 * 300.00387 * 9 7 2 27 27 H 1.00895 * 111.00226 * 56.05099 * 10 9 7 28 28 H 1.09002 * 109.47351 * 60.00282 * 11 10 9 29 29 H 1.09002 * 109.47308 * 300.00172 * 11 10 9 30 30 H 1.09002 * 109.47398 * 185.00108 * 12 11 10 31 31 H 1.09001 * 109.47194 * 305.00288 * 12 11 10 32 32 H 1.07994 * 120.44273 * 0.02562 * 15 14 13 33 33 H 1.07999 * 120.76154 * 180.24344 * 16 15 14 34 34 H 1.07995 * 119.58588 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5054 -4.9070 -0.0024 12 6 2.5303 -6.0431 -0.0043 13 8 3.2731 -6.0164 1.2161 14 6 4.2296 -6.9653 1.3758 15 6 4.9891 -6.9876 2.5388 16 6 5.9581 -7.9637 2.6915 17 6 6.1413 -8.8810 1.6656 18 6 7.1884 -9.9581 1.7850 19 9 7.1769 -10.7496 0.6315 20 9 8.4486 -9.3690 1.9340 21 9 6.9117 -10.7558 2.9006 22 6 5.3536 -8.7961 0.5350 23 7 4.4340 -7.8566 0.4205 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6246 -2.5572 0.8897 27 1 2.8411 -3.5491 0.7791 28 1 0.8801 -4.9809 -0.8922 29 1 0.8808 -4.9822 0.8878 30 1 2.0135 -6.9985 -0.0944 31 1 3.2107 -5.9172 -0.8466 32 1 4.8226 -6.2557 3.3153 33 1 6.5611 -8.0083 3.5864 34 1 5.4924 -9.5069 -0.2661 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571433271.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:38 Heat of formation + Delta-G solvation = -155.163620 kcal Electronic energy + Delta-G solvation = -21914.855083 eV Core-core repulsion = 17819.166456 eV Total energy + Delta-G solvation = -4095.688627 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.47333 -48.00396 -47.92519 -40.99058 -38.40515 -35.33081 -33.21465 -32.65811 -31.70807 -29.32476 -26.34978 -25.86687 -24.28938 -22.80601 -21.95595 -21.21401 -18.99811 -18.80205 -18.72460 -18.50306 -17.06014 -16.42538 -16.24631 -15.20504 -14.87039 -14.81880 -14.68652 -14.57062 -14.37868 -14.33143 -14.18339 -14.10235 -14.09162 -13.73461 -13.43992 -12.97387 -12.52523 -12.21448 -11.69000 -11.57046 -11.26091 -11.01601 -10.67269 -10.62292 -10.45979 -10.07073 -9.92096 -9.22032 -8.98653 -8.50416 -7.38058 -6.05604 -4.07637 0.48873 0.75471 2.30690 2.83216 3.19518 3.31246 3.36871 3.39858 3.40852 3.66351 3.90285 4.10100 4.32445 4.41089 4.62676 4.69798 5.01233 5.20588 5.27628 5.30543 5.34262 5.50769 5.53702 5.74343 5.80964 6.14224 6.19067 7.01880 7.18162 7.37592 7.39359 7.74465 8.08218 8.33743 8.55629 9.01348 9.57392 11.05629 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.032519 B = 0.002550 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.836699 B =10977.984364 C =11408.395755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.690 5.690 11 C 0.058 3.942 12 C 0.072 3.928 13 O -0.291 6.291 14 C 0.364 3.636 15 C -0.193 4.193 16 C 0.009 3.991 17 C -0.293 4.293 18 C 0.522 3.478 19 F -0.177 7.177 20 F -0.177 7.177 21 F -0.178 7.178 22 C 0.198 3.802 23 N -0.537 5.537 24 H 0.262 0.738 25 H 0.028 0.972 26 H -0.012 1.012 27 H 0.335 0.665 28 H 0.088 0.912 29 H 0.030 0.970 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.156 0.844 33 H 0.151 0.849 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.370 -21.724 5.053 25.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.321 5.321 11 C -0.073 4.073 12 C -0.003 4.003 13 O -0.196 6.196 14 C 0.185 3.815 15 C -0.213 4.213 16 C -0.016 4.016 17 C -0.297 4.297 18 C 0.467 3.533 19 F -0.158 7.158 20 F -0.158 7.158 21 F -0.159 7.159 22 C 0.040 3.960 23 N -0.261 5.261 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.006 0.994 27 H 0.151 0.849 28 H 0.107 0.893 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.174 0.826 33 H 0.168 0.832 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 11.662 -21.299 3.787 24.577 hybrid contribution 0.651 0.582 1.437 1.681 sum 12.313 -20.718 5.224 24.660 Atomic orbital electron populations 1.69958 1.06099 1.26851 1.50880 1.24995 0.94891 0.99417 0.95290 0.86463 0.79684 0.82900 0.78155 1.20587 1.21277 1.19816 1.21177 0.93540 0.90202 1.50415 0.91941 1.19576 0.90594 0.87363 0.95854 1.60739 1.21106 1.00968 1.49310 1.22025 0.94160 0.89902 1.01168 1.23050 0.93906 0.99351 0.84032 1.86326 1.44817 1.46642 1.41819 1.20175 0.86496 0.85669 0.89177 1.21134 0.98514 1.02772 0.98929 1.21103 0.93755 0.89911 0.96858 1.20759 1.04833 1.02682 1.01462 1.17954 0.80697 0.80935 0.73680 1.93167 1.96552 1.76041 1.50075 1.93228 1.43344 1.83817 1.95407 1.93221 1.93596 1.75702 1.53378 1.22339 0.86609 0.92568 0.94441 1.67617 1.21744 1.06230 1.30487 0.92872 0.95348 0.99438 0.84872 0.89349 0.95207 0.91407 0.90264 0.82643 0.83175 0.81123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.51 -14.65 9.32 -34.44 -0.32 -14.97 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.19 5.04 5.44 -4.97 -0.03 5.02 16 10 N -0.69 -14.79 6.49 -115.05 -0.75 -15.53 16 11 C 0.06 0.98 6.10 -3.82 -0.02 0.96 16 12 C 0.07 1.02 5.65 37.16 0.21 1.23 16 13 O -0.29 -4.24 9.64 -18.73 -0.18 -4.42 16 14 C 0.36 4.61 7.49 -17.12 -0.13 4.48 16 15 C -0.19 -1.94 10.04 -39.28 -0.39 -2.34 16 16 C 0.01 0.07 9.76 -39.31 -0.38 -0.31 16 17 C -0.29 -2.65 5.38 -104.47 -0.56 -3.21 16 18 C 0.52 4.48 3.33 36.00 0.12 4.60 16 19 F -0.18 -1.51 15.99 2.25 0.04 -1.48 16 20 F -0.18 -1.62 17.25 2.25 0.04 -1.58 16 21 F -0.18 -1.58 17.25 2.25 0.04 -1.54 16 22 C 0.20 1.93 10.59 -17.56 -0.19 1.75 16 23 N -0.54 -6.54 9.22 -13.33 -0.12 -6.66 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 16 27 H 0.33 7.04 8.28 -39.29 -0.33 6.72 16 28 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.17 1.26 7.15 -52.49 -0.38 0.88 16 LS Contribution 314.99 15.07 4.75 4.75 Total: -1.00 -30.80 314.99 -5.89 -36.69 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -3.62 Total: 0.49 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -1.79 Total: -1.30 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.13 Total: -48.29 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.18 Total: -4.42 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.11 Total: -4.59 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.80 -5.89 -36.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571433271.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.471 kcal (2) G-P(sol) polarization free energy of solvation -30.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds