Wall clock time and date at job start Tue Mar 31 2020 06:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99919 * 2 1 4 4 H 1.48496 * 109.46831 * 270.00053 * 3 2 1 5 5 H 1.48494 * 109.46986 * 30.00070 * 3 2 1 6 6 H 1.48500 * 109.46823 * 150.00120 * 3 2 1 7 7 C 1.37879 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00578 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99833 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46937 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99842 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47357 * 179.97438 * 11 10 9 13 13 O 1.42903 * 109.46726 * 64.99864 * 12 11 10 14 14 C 1.35676 * 116.99635 * 179.97438 * 13 12 11 15 15 C 1.38922 * 119.68320 * 179.72662 * 14 13 12 16 16 C 1.38382 * 119.11201 * 179.75588 * 15 14 13 17 17 C 1.38834 * 118.48218 * 0.51010 * 16 15 14 18 18 C 1.50698 * 120.35286 * 179.75262 * 17 16 15 19 19 F 1.39897 * 109.47021 * 179.97438 * 18 17 16 20 20 F 1.39904 * 109.47004 * 299.97703 * 18 17 16 21 21 F 1.39900 * 109.47117 * 59.97984 * 18 17 16 22 22 C 1.38045 * 119.29294 * 359.73325 * 17 16 15 23 23 N 1.31970 * 120.82893 * 0.02562 * 22 17 16 24 24 H 0.96993 * 120.00026 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47131 * 60.00148 * 9 7 2 26 26 H 1.09003 * 109.47422 * 300.00387 * 9 7 2 27 27 H 1.00895 * 111.00226 * 56.05099 * 10 9 7 28 28 H 1.09002 * 109.47351 * 60.00282 * 11 10 9 29 29 H 1.09002 * 109.47308 * 300.00172 * 11 10 9 30 30 H 1.09002 * 109.47398 * 185.00108 * 12 11 10 31 31 H 1.09001 * 109.47194 * 305.00288 * 12 11 10 32 32 H 1.07994 * 120.44273 * 0.02562 * 15 14 13 33 33 H 1.07999 * 120.76154 * 180.24344 * 16 15 14 34 34 H 1.07995 * 119.58588 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5054 -4.9070 -0.0024 12 6 2.5303 -6.0431 -0.0043 13 8 3.2731 -6.0164 1.2161 14 6 4.2296 -6.9653 1.3758 15 6 4.9891 -6.9876 2.5388 16 6 5.9581 -7.9637 2.6915 17 6 6.1413 -8.8810 1.6656 18 6 7.1884 -9.9581 1.7850 19 9 7.1769 -10.7496 0.6315 20 9 8.4486 -9.3690 1.9340 21 9 6.9117 -10.7558 2.9006 22 6 5.3536 -8.7961 0.5350 23 7 4.4340 -7.8566 0.4205 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6246 -2.5572 0.8897 27 1 2.8411 -3.5491 0.7791 28 1 0.8801 -4.9809 -0.8922 29 1 0.8808 -4.9822 0.8878 30 1 2.0135 -6.9985 -0.0944 31 1 3.2107 -5.9172 -0.8466 32 1 4.8226 -6.2557 3.3153 33 1 6.5611 -8.0083 3.5864 34 1 5.4924 -9.5069 -0.2661 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571433271.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:37 Heat of formation + Delta-G solvation = -176.928543 kcal Electronic energy + Delta-G solvation = -21915.798881 eV Core-core repulsion = 17819.166456 eV Total energy + Delta-G solvation = -4096.632425 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -51.16828 -48.69238 -48.62646 -41.84322 -39.41259 -37.03024 -34.66303 -33.98963 -32.67043 -30.84938 -27.90176 -26.93913 -25.24071 -23.82057 -23.57010 -22.67153 -19.81945 -19.49442 -19.44268 -19.34843 -18.62593 -17.80243 -17.38089 -16.77872 -16.22661 -15.86104 -15.56051 -15.51034 -15.29553 -15.23582 -15.06951 -14.97404 -14.83312 -14.78651 -14.39068 -14.27750 -14.14937 -13.54875 -13.13683 -13.00123 -12.89830 -12.67203 -12.37424 -12.13529 -11.89539 -11.30182 -11.23296 -10.89092 -10.67027 -9.85057 -9.18910 -8.23770 -6.34973 -0.31192 0.01876 1.41457 1.43250 1.54571 1.58086 1.89758 2.39121 2.39813 2.68107 2.96535 3.09751 3.10439 3.40579 3.49321 3.64904 3.83526 3.97999 4.02112 4.28882 4.40309 4.50180 4.59811 4.72415 4.80186 4.82465 5.07051 5.17272 5.25013 5.59255 5.99093 6.06243 6.39061 6.55874 6.66863 6.85712 7.35949 8.87949 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.032519 B = 0.002550 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.836699 B =10977.984364 C =11408.395755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.974 3.026 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.207 3.793 10 N -0.689 5.689 11 C 0.058 3.942 12 C 0.087 3.913 13 O -0.310 6.310 14 C 0.338 3.662 15 C -0.195 4.195 16 C 0.017 3.983 17 C -0.288 4.288 18 C 0.529 3.471 19 F -0.176 7.176 20 F -0.178 7.178 21 F -0.177 7.177 22 C 0.191 3.809 23 N -0.555 5.555 24 H 0.266 0.734 25 H 0.005 0.995 26 H -0.037 1.037 27 H 0.337 0.663 28 H 0.093 0.907 29 H 0.029 0.971 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.168 0.832 33 H 0.181 0.819 34 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.081 -22.234 5.585 26.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.079 3.921 10 N -0.320 5.320 11 C -0.072 4.072 12 C 0.012 3.988 13 O -0.217 6.217 14 C 0.160 3.840 15 C -0.215 4.215 16 C -0.008 4.008 17 C -0.293 4.293 18 C 0.474 3.526 19 F -0.157 7.157 20 F -0.160 7.160 21 F -0.159 7.159 22 C 0.034 3.966 23 N -0.279 5.279 24 H 0.075 0.925 25 H 0.023 0.977 26 H -0.019 1.019 27 H 0.154 0.846 28 H 0.112 0.888 29 H 0.047 0.953 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.186 0.814 33 H 0.198 0.802 34 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 13.394 -21.848 4.320 25.988 hybrid contribution 0.167 0.602 1.296 1.439 sum 13.560 -21.246 5.616 25.823 Atomic orbital electron populations 1.70080 1.07783 1.28087 1.51440 1.25955 0.95813 1.03402 0.94506 0.85318 0.78521 0.77889 0.78489 1.19830 1.20584 1.18745 1.21541 0.93787 0.91490 1.50773 0.91877 1.19235 0.90625 0.88782 0.93474 1.60607 1.20442 1.01527 1.49465 1.22096 0.94993 0.88744 1.01366 1.22757 0.93229 0.98695 0.84145 1.86268 1.45815 1.48001 1.41579 1.20431 0.87072 0.86073 0.90459 1.21342 0.98331 1.03440 0.98399 1.21459 0.93052 0.88676 0.97580 1.20881 1.04423 1.02640 1.01317 1.17801 0.80375 0.80709 0.73671 1.93173 1.96524 1.75990 1.50037 1.93230 1.43456 1.83864 1.95420 1.93226 1.93581 1.75679 1.53391 1.22685 0.86170 0.92364 0.95365 1.67561 1.22734 1.06797 1.30820 0.92535 0.97716 1.01939 0.84598 0.88844 0.95309 0.89402 0.90926 0.81397 0.80190 0.79189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.97 44.32 29.54 68.60 2.03 46.34 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.54 -30.97 9.32 25.60 0.24 -30.73 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 9 C 0.21 11.14 5.44 85.56 0.47 11.61 16 10 N -0.69 -30.04 6.49 -517.91 -3.36 -33.40 16 11 C 0.06 1.98 6.10 86.30 0.53 2.51 16 12 C 0.09 2.45 5.65 71.98 0.41 2.86 16 13 O -0.31 -8.95 9.64 -89.94 -0.87 -9.82 16 14 C 0.34 8.28 7.49 84.79 0.63 8.92 16 15 C -0.19 -3.62 10.04 22.47 0.23 -3.40 16 16 C 0.02 0.25 9.76 22.45 0.22 0.47 16 17 C -0.29 -4.59 5.38 -19.77 -0.11 -4.69 16 18 C 0.53 7.87 3.33 71.24 0.24 8.11 16 19 F -0.18 -2.64 15.99 44.97 0.72 -1.92 16 20 F -0.18 -2.86 17.25 44.97 0.78 -2.08 16 21 F -0.18 -2.74 17.25 44.97 0.78 -1.96 16 22 C 0.19 3.42 10.59 84.63 0.90 4.32 16 23 N -0.56 -12.96 9.22 -308.95 -2.85 -15.81 16 24 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 25 H 0.00 0.27 8.14 -2.38 -0.02 0.25 16 26 H -0.04 -2.14 8.14 -2.39 -0.02 -2.16 16 27 H 0.34 14.37 8.28 -89.70 -0.74 13.63 16 28 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 29 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 2.12 8.10 -2.39 -0.02 2.10 16 31 H 0.07 2.14 8.10 -2.39 -0.02 2.12 16 32 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.19 2.46 7.15 -2.91 -0.02 2.44 16 Total: -1.00 -65.96 314.99 2.11 -63.85 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.40 Total: 10.48 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 4.21 Total: 0.51 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -5.92 Total: -105.40 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.87 Total: -9.82 kcal Atomic # 9 Polarization: -8.24 SS G_CDS: 2.27 Total: -5.97 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -65.96 2.11 -63.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571433271.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.082 kcal (2) G-P(sol) polarization free energy of solvation -65.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds