Wall clock time and date at job start Tue Mar 31 2020 06:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99674 * 2 1 4 4 H 1.48503 * 109.47453 * 270.00116 * 3 2 1 5 5 H 1.48499 * 109.47113 * 30.00181 * 3 2 1 6 6 H 1.48498 * 109.46894 * 150.00275 * 3 2 1 7 7 C 1.37869 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00436 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00230 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47719 * 180.02562 * 9 7 2 11 11 C 1.46904 * 111.00138 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46811 * 180.02562 * 11 10 9 13 13 O 1.42900 * 109.47628 * 64.99403 * 12 11 10 14 14 C 1.35672 * 117.00087 * 179.97438 * 13 12 11 15 15 N 1.32281 * 119.68612 * 0.02861 * 14 13 12 16 16 C 1.31932 * 121.64680 * 179.97438 * 15 14 13 17 17 C 1.38088 * 120.83705 * 0.02562 * 16 15 14 18 18 C 1.38780 * 119.28461 * 359.69097 * 17 16 15 19 19 C 1.38421 * 118.48596 * 0.57301 * 18 17 16 20 20 C 1.50703 * 120.44442 * 179.71677 * 19 18 17 21 21 F 1.39905 * 109.47157 * 359.72420 * 20 19 18 22 22 F 1.39900 * 109.47159 * 239.72720 * 20 19 18 23 23 F 1.39897 * 109.47274 * 119.72411 * 20 19 18 24 24 H 0.96996 * 120.00068 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47031 * 60.00248 * 9 7 2 26 26 H 1.09003 * 109.47418 * 300.00543 * 9 7 2 27 27 H 1.00894 * 111.00232 * 56.04263 * 10 9 7 28 28 H 1.08999 * 109.47131 * 59.99888 * 11 10 9 29 29 H 1.09002 * 109.46851 * 299.99460 * 11 10 9 30 30 H 1.09003 * 109.46891 * 304.99311 * 12 11 10 31 31 H 1.09000 * 109.47191 * 185.00001 * 12 11 10 32 32 H 1.08005 * 119.57751 * 179.97438 * 16 15 14 33 33 H 1.08000 * 120.35451 * 179.97438 * 17 16 15 34 34 H 1.08008 * 120.76060 * 180.29064 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5055 -4.9070 -0.0011 12 6 2.5305 -6.0429 -0.0005 13 8 3.2716 -6.0152 1.2210 14 6 4.2280 -6.9638 1.3829 15 7 4.4341 -7.8560 0.4282 16 6 5.3538 -8.7946 0.5447 17 6 6.1394 -8.8792 1.6772 18 6 5.9583 -7.9580 2.6993 19 6 4.9814 -6.9889 2.5492 20 6 4.7429 -5.9706 3.6343 21 9 5.6219 -6.2067 4.6968 22 9 3.4238 -6.0737 4.0887 23 9 4.9616 -4.6862 3.1248 24 1 -0.4850 0.8400 -0.0004 25 1 0.6243 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 2.8407 -3.5486 0.7807 28 1 0.8809 -4.9812 -0.8913 29 1 0.8804 -4.9817 0.8887 30 1 3.2121 -5.9177 -0.8419 31 1 2.0140 -6.9985 -0.0905 32 1 5.4935 -9.5064 -0.2555 33 1 6.8897 -9.6510 1.7645 34 1 6.5627 -7.9991 3.5935 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574313534.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:15 Heat of formation + Delta-G solvation = -152.072848 kcal Electronic energy + Delta-G solvation = -23090.889674 eV Core-core repulsion = 18995.335072 eV Total energy + Delta-G solvation = -4095.554601 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -50.08411 -47.65877 -47.47113 -40.97637 -38.32689 -35.24960 -33.46128 -32.57355 -31.33531 -29.18758 -26.44660 -25.91864 -23.87758 -22.84833 -21.85048 -21.12379 -18.98984 -18.51996 -18.40433 -18.16229 -16.85826 -16.36621 -16.20990 -15.55563 -14.72997 -14.58856 -14.52171 -14.34316 -14.20777 -14.00617 -13.97065 -13.72875 -13.66663 -13.61539 -13.16554 -12.91470 -12.45128 -12.03381 -11.63215 -11.50720 -11.19200 -10.95369 -10.61791 -10.56520 -10.51549 -10.06209 -9.85955 -9.15690 -8.93495 -8.44482 -7.30683 -5.99673 -4.01193 0.45164 0.86641 2.60361 2.80031 3.23994 3.35768 3.41005 3.46033 3.62978 3.89529 4.06221 4.42998 4.44119 4.46661 4.67012 4.78900 4.96174 5.07254 5.27105 5.36563 5.47251 5.56804 5.60995 5.79982 5.87451 6.17774 6.24863 7.02999 7.24695 7.40990 7.45140 7.81123 8.14485 8.40591 8.62765 9.07802 9.63532 11.11633 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.020073 B = 0.004045 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.595741 B = 6919.892415 C = 7649.788430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.690 5.690 11 C 0.057 3.943 12 C 0.074 3.926 13 O -0.290 6.290 14 C 0.383 3.617 15 N -0.536 5.536 16 C 0.174 3.826 17 C -0.224 4.224 18 C 0.007 3.993 19 C -0.267 4.267 20 C 0.522 3.478 21 F -0.182 7.182 22 F -0.171 7.171 23 F -0.164 7.164 24 H 0.261 0.739 25 H 0.028 0.972 26 H -0.012 1.012 27 H 0.336 0.664 28 H 0.089 0.911 29 H 0.030 0.970 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.169 0.831 33 H 0.147 0.853 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.991 -21.093 5.304 24.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.321 5.321 11 C -0.073 4.073 12 C -0.001 4.001 13 O -0.195 6.195 14 C 0.203 3.797 15 N -0.260 5.260 16 C 0.017 3.983 17 C -0.244 4.244 18 C -0.018 4.018 19 C -0.271 4.271 20 C 0.467 3.533 21 F -0.164 7.164 22 F -0.152 7.152 23 F -0.146 7.146 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.006 0.994 27 H 0.153 0.847 28 H 0.107 0.893 29 H 0.048 0.952 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.186 0.814 33 H 0.165 0.835 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 11.255 -20.622 4.056 23.841 hybrid contribution 0.464 0.887 1.589 1.878 sum 11.719 -19.735 5.646 23.637 Atomic orbital electron populations 1.69962 1.06079 1.26763 1.51060 1.24981 0.94878 0.99361 0.95344 0.86476 0.79749 0.82962 0.78096 1.20623 1.21295 1.19798 1.21180 0.93561 0.90206 1.50181 0.91941 1.19571 0.90606 0.87387 0.95826 1.60741 1.21084 1.00908 1.49375 1.22024 0.94135 0.89954 1.01161 1.23054 0.93867 0.99421 0.83719 1.86350 1.44726 1.46376 1.42078 1.19432 0.86170 0.86195 0.87880 1.67646 1.22516 1.06297 1.29559 1.22764 0.87292 0.92198 0.96076 1.21967 1.04450 1.02572 0.95427 1.21333 0.91932 0.89664 0.98902 1.20063 1.06174 1.04017 0.96872 1.17789 0.74274 0.80754 0.80445 1.93143 1.69509 1.94430 1.59300 1.93238 1.36095 1.96060 1.89845 1.93289 1.94316 1.40206 1.86741 0.92937 0.95355 0.99434 0.84737 0.89308 0.95169 0.90219 0.91373 0.81432 0.83482 0.82864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -15.04 9.32 -34.45 -0.32 -15.36 16 8 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.19 5.22 5.44 -4.98 -0.03 5.19 16 10 N -0.69 -15.54 6.49 -115.06 -0.75 -16.29 16 11 C 0.06 1.04 6.11 -3.82 -0.02 1.01 16 12 C 0.07 1.13 5.65 37.16 0.21 1.34 16 13 O -0.29 -4.70 8.57 -18.72 -0.16 -4.86 16 14 C 0.38 5.36 7.39 -17.12 -0.13 5.24 16 15 N -0.54 -6.55 9.22 -13.33 -0.12 -6.67 16 16 C 0.17 1.44 11.18 -17.56 -0.20 1.24 16 17 C -0.22 -1.55 10.11 -39.44 -0.40 -1.94 16 18 C 0.01 0.06 9.53 -39.31 -0.37 -0.31 16 19 C -0.27 -3.31 5.39 -104.32 -0.56 -3.87 16 20 C 0.52 7.19 3.00 36.01 0.11 7.30 16 21 F -0.18 -2.18 16.05 2.25 0.04 -2.14 16 22 F -0.17 -2.59 16.97 2.25 0.04 -2.55 16 23 F -0.16 -2.65 16.97 2.25 0.04 -2.61 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H -0.01 -0.35 8.14 -51.93 -0.42 -0.77 16 27 H 0.34 7.64 8.28 -39.30 -0.33 7.32 16 28 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 31 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 32 H 0.17 0.79 8.06 -52.48 -0.42 0.36 16 33 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 34 H 0.15 0.96 7.25 -52.48 -0.38 0.58 16 LS Contribution 313.52 15.07 4.72 4.72 Total: -1.00 -32.80 313.52 -5.92 -38.72 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -3.63 Total: -0.25 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -1.81 Total: 1.37 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.13 Total: -49.65 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.16 Total: -4.86 kcal Atomic # 9 Polarization: -7.42 SS G_CDS: 0.11 Total: -7.31 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.80 -5.92 -38.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574313534.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.357 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds