Wall clock time and date at job start Tue Mar 31 2020 06:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99674 * 2 1 4 4 H 1.48503 * 109.47453 * 270.00116 * 3 2 1 5 5 H 1.48499 * 109.47113 * 30.00181 * 3 2 1 6 6 H 1.48498 * 109.46894 * 150.00275 * 3 2 1 7 7 C 1.37869 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00436 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00230 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47719 * 180.02562 * 9 7 2 11 11 C 1.46904 * 111.00138 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46811 * 180.02562 * 11 10 9 13 13 O 1.42900 * 109.47628 * 64.99403 * 12 11 10 14 14 C 1.35672 * 117.00087 * 179.97438 * 13 12 11 15 15 N 1.32281 * 119.68612 * 0.02861 * 14 13 12 16 16 C 1.31932 * 121.64680 * 179.97438 * 15 14 13 17 17 C 1.38088 * 120.83705 * 0.02562 * 16 15 14 18 18 C 1.38780 * 119.28461 * 359.69097 * 17 16 15 19 19 C 1.38421 * 118.48596 * 0.57301 * 18 17 16 20 20 C 1.50703 * 120.44442 * 179.71677 * 19 18 17 21 21 F 1.39905 * 109.47157 * 359.72420 * 20 19 18 22 22 F 1.39900 * 109.47159 * 239.72720 * 20 19 18 23 23 F 1.39897 * 109.47274 * 119.72411 * 20 19 18 24 24 H 0.96996 * 120.00068 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47031 * 60.00248 * 9 7 2 26 26 H 1.09003 * 109.47418 * 300.00543 * 9 7 2 27 27 H 1.00894 * 111.00232 * 56.04263 * 10 9 7 28 28 H 1.08999 * 109.47131 * 59.99888 * 11 10 9 29 29 H 1.09002 * 109.46851 * 299.99460 * 11 10 9 30 30 H 1.09003 * 109.46891 * 304.99311 * 12 11 10 31 31 H 1.09000 * 109.47191 * 185.00001 * 12 11 10 32 32 H 1.08005 * 119.57751 * 179.97438 * 16 15 14 33 33 H 1.08000 * 120.35451 * 179.97438 * 17 16 15 34 34 H 1.08008 * 120.76060 * 180.29064 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5055 -4.9070 -0.0011 12 6 2.5305 -6.0429 -0.0005 13 8 3.2716 -6.0152 1.2210 14 6 4.2280 -6.9638 1.3829 15 7 4.4341 -7.8560 0.4282 16 6 5.3538 -8.7946 0.5447 17 6 6.1394 -8.8792 1.6772 18 6 5.9583 -7.9580 2.6993 19 6 4.9814 -6.9889 2.5492 20 6 4.7429 -5.9706 3.6343 21 9 5.6219 -6.2067 4.6968 22 9 3.4238 -6.0737 4.0887 23 9 4.9616 -4.6862 3.1248 24 1 -0.4850 0.8400 -0.0004 25 1 0.6243 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 2.8407 -3.5486 0.7807 28 1 0.8809 -4.9812 -0.8913 29 1 0.8804 -4.9817 0.8887 30 1 3.2121 -5.9177 -0.8419 31 1 2.0140 -6.9985 -0.0905 32 1 5.4935 -9.5064 -0.2555 33 1 6.8897 -9.6510 1.7645 34 1 6.5627 -7.9991 3.5935 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574313534.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:13 Heat of formation + Delta-G solvation = -176.352801 kcal Electronic energy + Delta-G solvation = -23091.942532 eV Core-core repulsion = 18995.335072 eV Total energy + Delta-G solvation = -4096.607459 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.17240 -48.71310 -48.63628 -41.82794 -39.35844 -37.02897 -34.67042 -34.24554 -32.30606 -30.75297 -27.84943 -27.33936 -24.94581 -23.84412 -23.60049 -22.63111 -19.95460 -19.55156 -19.51708 -19.13076 -18.62307 -17.62484 -17.39893 -16.80262 -16.32110 -16.02742 -15.63048 -15.53921 -15.27046 -15.22956 -15.07886 -14.95838 -14.81796 -14.73497 -14.37897 -14.24326 -13.85999 -13.56586 -13.13985 -13.01261 -12.83087 -12.67511 -12.38697 -12.11775 -11.89380 -11.31605 -11.28924 -10.84602 -10.67868 -9.76117 -9.21611 -8.24703 -6.35935 -0.29878 0.13140 1.39445 1.41729 1.53270 1.60491 1.81954 2.38819 2.49153 2.65917 2.94553 3.08466 3.26941 3.36528 3.47089 3.77316 3.88755 3.99502 4.11950 4.26652 4.37196 4.38404 4.69764 4.78467 4.83289 4.98701 5.04989 5.23150 5.35313 5.57886 5.97542 6.03916 6.36264 6.62644 6.64338 6.82940 7.34670 8.87131 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.020073 B = 0.004045 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.595741 B = 6919.892415 C = 7649.788430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.539 4.539 8 H 0.060 0.940 9 C 0.206 3.794 10 N -0.687 5.687 11 C 0.056 3.944 12 C 0.090 3.910 13 O -0.319 6.319 14 C 0.353 3.647 15 N -0.556 5.556 16 C 0.168 3.832 17 C -0.198 4.198 18 C 0.007 3.993 19 C -0.283 4.283 20 C 0.518 3.482 21 F -0.172 7.172 22 F -0.185 7.185 23 F -0.185 7.185 24 H 0.266 0.734 25 H 0.008 0.992 26 H -0.040 1.040 27 H 0.333 0.667 28 H 0.098 0.902 29 H 0.024 0.976 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.207 0.793 33 H 0.193 0.807 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.310 -22.735 5.125 27.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.577 4.577 8 H 0.079 0.921 9 C 0.079 3.921 10 N -0.318 5.318 11 C -0.073 4.073 12 C 0.015 3.985 13 O -0.226 6.226 14 C 0.174 3.826 15 N -0.280 5.280 16 C 0.012 3.988 17 C -0.217 4.217 18 C -0.019 4.019 19 C -0.288 4.288 20 C 0.463 3.537 21 F -0.153 7.153 22 F -0.166 7.166 23 F -0.166 7.166 24 H 0.075 0.925 25 H 0.026 0.974 26 H -0.022 1.022 27 H 0.150 0.850 28 H 0.116 0.884 29 H 0.042 0.958 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.224 0.776 33 H 0.211 0.789 34 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 13.593 -22.306 3.875 26.407 hybrid contribution -0.184 1.221 1.673 2.080 sum 13.409 -21.085 5.548 25.596 Atomic orbital electron populations 1.70082 1.07740 1.28093 1.51379 1.25946 0.95835 1.03356 0.94422 0.85321 0.78421 0.77870 0.78622 1.19484 1.20409 1.19076 1.21517 0.93689 0.91561 1.50911 0.92133 1.19243 0.90615 0.88804 0.93458 1.60630 1.20376 1.01612 1.49190 1.22123 0.95043 0.88862 1.01281 1.22767 0.93179 0.98740 0.83801 1.86278 1.46021 1.48168 1.42092 1.19593 0.86776 0.86977 0.89219 1.67643 1.24091 1.06955 1.29305 1.23553 0.86064 0.91491 0.97688 1.22489 1.03742 1.01959 0.93528 1.21766 0.90873 0.88758 1.00464 1.20135 1.07727 1.04893 0.95997 1.18070 0.73860 0.80512 0.81240 1.93149 1.68980 1.94278 1.58911 1.93202 1.37264 1.96074 1.90092 1.93240 1.94396 1.41887 1.87085 0.92497 0.97353 1.02247 0.85001 0.88373 0.95815 0.90596 0.89127 0.77627 0.78933 0.80350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.90 13.29 21.44 0.28 -57.62 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.97 45.90 29.54 68.60 2.03 47.93 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 7 C -0.54 -32.37 9.32 25.60 0.24 -32.14 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 9 C 0.21 11.69 5.44 85.56 0.47 12.15 16 10 N -0.69 -32.14 6.49 -517.93 -3.36 -35.51 16 11 C 0.06 2.10 6.11 86.30 0.53 2.63 16 12 C 0.09 2.76 5.65 71.98 0.41 3.17 16 13 O -0.32 -10.62 8.57 -89.89 -0.77 -11.39 16 14 C 0.35 9.78 7.39 84.78 0.63 10.41 16 15 N -0.56 -12.66 9.22 -308.94 -2.85 -15.50 16 16 C 0.17 2.17 11.18 84.64 0.95 3.11 16 17 C -0.20 -1.84 10.11 22.36 0.23 -1.61 16 18 C 0.01 0.09 9.53 22.44 0.21 0.31 16 19 C -0.28 -6.81 5.39 -19.67 -0.11 -6.92 16 20 C 0.52 14.47 3.00 71.24 0.21 14.68 16 21 F -0.17 -4.00 16.05 44.97 0.72 -3.28 16 22 F -0.18 -5.82 16.97 44.97 0.76 -5.06 16 23 F -0.18 -6.21 16.97 44.97 0.76 -5.45 16 24 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 25 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 26 H -0.04 -2.44 8.14 -2.39 -0.02 -2.46 16 27 H 0.33 15.86 8.28 -89.70 -0.74 15.11 16 28 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 29 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 2.36 8.10 -2.39 -0.02 2.34 16 31 H 0.09 2.34 8.10 -2.39 -0.02 2.32 16 32 H 0.21 0.93 8.06 -2.91 -0.02 0.91 16 33 H 0.19 0.07 8.06 -2.91 -0.02 0.05 16 34 H 0.18 1.60 7.25 -2.91 -0.02 1.58 16 Total: -1.00 -73.76 313.52 2.20 -71.56 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.40 Total: 7.89 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 4.22 Total: 6.43 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -5.92 Total: -108.63 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -0.77 Total: -11.39 kcal Atomic # 9 Polarization: -16.03 SS G_CDS: 2.25 Total: -13.78 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -73.76 2.20 -71.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574313534.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.795 kcal (2) G-P(sol) polarization free energy of solvation -73.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds