Wall clock time and date at job start Tue Mar 31 2020 08:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99726 * 2 1 4 4 H 1.48490 * 109.47072 * 239.99710 * 3 2 1 5 5 H 1.48503 * 109.47190 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46935 * 119.99551 * 3 2 1 7 7 C 1.37876 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99940 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46825 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46825 * 180.02562 * 10 9 7 12 12 O 1.21301 * 120.00365 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00107 * 179.97438 * 11 10 9 14 14 C 1.40095 * 120.00401 * 185.27588 * 13 11 10 15 15 C 1.38870 * 119.97691 * 33.36393 * 14 13 11 16 16 C 1.38241 * 120.18735 * 180.02562 * 15 14 13 17 17 C 1.38409 * 119.96473 * 359.96894 * 16 15 14 18 18 C 1.39412 * 119.98503 * 0.03859 * 17 16 15 19 19 C 1.38450 * 120.04619 * 359.97438 * 18 17 16 20 20 N 1.40217 * 119.27515 * 179.97438 * 18 17 16 21 21 C 1.35084 * 118.99986 * 15.78984 * 20 18 17 22 22 O 1.21289 * 120.13609 * 181.35514 * 21 20 18 23 23 C 1.50746 * 119.74013 * 1.13265 * 21 20 18 24 24 O 1.36081 * 120.58304 * 180.11295 * 17 16 15 25 25 H 0.96999 * 120.00357 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47245 * 60.00687 * 9 7 2 27 27 H 1.08998 * 109.47515 * 299.99800 * 9 7 2 28 28 H 1.08998 * 109.46654 * 60.00318 * 10 9 7 29 29 H 1.08998 * 109.46905 * 300.00167 * 10 9 7 30 30 H 0.97006 * 119.99709 * 5.28192 * 13 11 10 31 31 H 1.08002 * 119.90305 * 359.97438 * 15 14 13 32 32 H 1.07997 * 120.02135 * 179.97438 * 16 15 14 33 33 H 1.08004 * 120.11478 * 180.02562 * 19 18 17 34 34 H 0.96996 * 120.50572 * 195.51386 * 20 18 17 35 35 H 1.08994 * 109.55352 * 208.94669 * 23 21 20 36 36 H 1.09008 * 109.20190 * 89.09446 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 6 1.4921 -4.9671 0.0012 12 8 0.2791 -4.9672 0.0003 13 7 2.1659 -6.1343 0.0016 14 6 1.4701 -7.3450 -0.1105 15 6 0.3104 -7.4109 -0.8716 16 6 -0.3800 -8.6032 -0.9848 17 6 0.0852 -9.7354 -0.3388 18 6 1.2491 -9.6725 0.4261 19 6 1.9403 -8.4783 0.5396 20 7 1.7067 -10.8285 1.0746 21 6 1.2147 -12.0289 0.6980 22 8 1.5778 -13.0397 1.2616 23 6 0.2089 -12.1068 -0.4221 24 8 -0.5832 -10.9162 -0.4435 25 1 -0.4850 0.8400 -0.0004 26 1 0.6249 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8903 28 1 2.8714 -3.6038 0.8923 29 1 2.8729 -3.6046 -0.8877 30 1 3.1329 -6.1361 0.0796 31 1 -0.0536 -6.5278 -1.3758 32 1 -1.2819 -8.6513 -1.5770 33 1 2.8423 -8.4284 1.1316 34 1 2.3695 -10.7675 1.7801 35 1 -0.4387 -12.9705 -0.2714 36 1 0.7359 -12.2095 -1.3707 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589685921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:17 Heat of formation + Delta-G solvation = -82.055275 kcal Electronic energy + Delta-G solvation = -21716.060656 eV Core-core repulsion = 18165.398985 eV Total energy + Delta-G solvation = -3550.661671 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.70845 -40.12067 -38.87012 -37.56965 -35.58636 -34.16691 -33.56852 -31.22322 -30.31992 -29.69129 -27.76268 -25.80829 -23.88294 -23.24155 -21.98587 -20.15633 -19.84969 -19.16089 -18.09452 -17.48333 -17.15510 -16.54868 -16.21139 -15.80969 -15.40213 -15.11598 -14.85803 -14.53366 -14.38648 -14.15588 -13.67681 -13.47538 -13.16937 -12.99725 -12.58993 -12.24954 -11.83848 -11.54518 -11.26848 -11.16299 -10.96317 -10.68241 -10.52386 -10.06967 -9.88530 -9.76349 -9.34495 -9.16529 -8.71179 -8.38690 -7.83146 -6.02505 -4.07595 0.82182 0.99263 1.95581 2.37082 2.88226 2.98033 3.22267 3.30385 3.35842 3.37178 3.56477 3.67551 4.35842 4.41921 4.54472 4.72166 4.91945 4.97590 5.07739 5.32667 5.40728 5.42564 5.59433 5.75871 6.03848 6.06060 6.12511 6.18867 6.28660 6.45649 6.71204 6.74088 7.03249 7.38949 7.52787 7.65803 7.75036 7.98127 8.27739 8.46554 9.00017 9.56524 11.08289 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.051511 B = 0.002592 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.438729 B =10800.920735 C =11190.695451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.530 4.530 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.510 3.490 12 O -0.509 6.509 13 N -0.685 5.685 14 C 0.173 3.827 15 C -0.112 4.112 16 C -0.082 4.082 17 C 0.051 3.949 18 C 0.109 3.891 19 C -0.157 4.157 20 N -0.657 5.657 21 C 0.492 3.508 22 O -0.517 6.517 23 C 0.051 3.949 24 O -0.301 6.301 25 H 0.262 0.738 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.410 0.590 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.136 0.864 34 H 0.415 0.585 35 H 0.144 0.856 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.574 -21.832 -2.093 22.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.569 4.569 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.300 3.700 12 O -0.381 6.381 13 N -0.332 5.332 14 C 0.077 3.923 15 C -0.133 4.133 16 C -0.102 4.102 17 C 0.004 3.996 18 C 0.014 3.986 19 C -0.181 4.181 20 N -0.304 5.304 21 C 0.279 3.721 22 O -0.392 6.392 23 C -0.028 4.028 24 O -0.216 6.216 25 H 0.072 0.928 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.246 0.754 31 H 0.168 0.832 32 H 0.161 0.839 33 H 0.153 0.847 34 H 0.254 0.746 35 H 0.162 0.838 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.406 -22.272 -1.931 22.613 hybrid contribution 1.565 0.916 0.527 1.889 sum 4.971 -21.356 -1.404 21.972 Atomic orbital electron populations 1.69977 1.06064 1.26846 1.49829 1.25020 0.94835 0.99271 0.95177 0.86640 0.79549 0.83104 0.78569 1.20214 1.21252 1.20235 1.21147 0.92903 0.90919 1.51891 0.92594 1.18922 0.93119 0.89272 0.98784 1.21927 1.00884 0.91073 1.02976 1.21901 0.88882 0.85345 0.73899 1.90705 1.14272 1.87123 1.46042 1.44017 1.10787 1.04090 1.74272 1.17537 0.94102 0.85603 0.95046 1.21167 0.95138 0.98204 0.98748 1.20439 1.01069 0.89951 0.98696 1.18512 0.92948 0.87250 1.00885 1.17641 0.95411 0.87335 0.98260 1.20246 1.02651 0.90988 1.04191 1.43704 1.43753 1.04832 1.38126 1.21608 0.82282 0.82819 0.85394 1.90811 1.59902 1.33936 1.54589 1.23145 0.93809 0.88737 0.97071 1.86291 1.33137 1.11515 1.90637 0.92794 0.95661 0.95694 0.89800 0.89628 0.75398 0.83244 0.83889 0.84655 0.74555 0.83839 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.40 9.11 -34.44 -0.31 -14.72 16 8 H 0.06 1.42 7.74 -52.48 -0.41 1.02 16 9 C 0.04 0.92 4.26 -27.88 -0.12 0.81 16 10 C -0.13 -2.34 5.64 -27.88 -0.16 -2.50 16 11 C 0.51 8.68 7.57 -10.99 -0.08 8.60 16 12 O -0.51 -10.69 13.67 5.54 0.08 -10.62 16 13 N -0.69 -8.42 5.35 -9.82 -0.05 -8.47 16 14 C 0.17 2.12 6.28 -83.62 -0.53 1.59 16 15 C -0.11 -1.46 8.65 -39.35 -0.34 -1.80 16 16 C -0.08 -0.92 9.99 -39.52 -0.39 -1.32 16 17 C 0.05 0.56 6.44 -39.08 -0.25 0.31 16 18 C 0.11 1.12 6.54 -83.51 -0.55 0.57 16 19 C -0.16 -1.56 9.86 -39.27 -0.39 -1.95 16 20 N -0.66 -6.00 5.47 -9.68 -0.05 -6.06 16 21 C 0.49 4.90 7.94 -10.82 -0.09 4.82 16 22 O -0.52 -6.62 17.95 5.55 0.10 -6.52 16 23 C 0.05 0.38 7.16 36.03 0.26 0.64 16 24 O -0.30 -3.05 10.46 -20.00 -0.21 -3.26 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.41 3.55 8.82 -40.82 -0.36 3.19 16 31 H 0.15 2.22 6.40 -52.49 -0.34 1.89 16 32 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.42 3.08 8.89 -40.82 -0.36 2.72 16 35 H 0.14 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 LS Contribution 316.99 15.07 4.78 4.78 Total: -1.00 -34.66 316.99 -6.67 -41.33 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -3.98 Total: 2.06 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -3.04 Total: -3.38 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.63 Total: -40.42 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.03 Total: -20.40 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.66 -6.67 -41.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589685921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.722 kcal (2) G-P(sol) polarization free energy of solvation -34.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds