Wall clock time and date at job start Tue Mar 31 2020 08:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99726 * 2 1 4 4 H 1.48490 * 109.47072 * 239.99710 * 3 2 1 5 5 H 1.48503 * 109.47190 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46935 * 119.99551 * 3 2 1 7 7 C 1.37876 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99940 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46825 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.46825 * 180.02562 * 10 9 7 12 12 O 1.21301 * 120.00365 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00107 * 179.97438 * 11 10 9 14 14 C 1.40095 * 120.00401 * 185.27588 * 13 11 10 15 15 C 1.38870 * 119.97691 * 33.36393 * 14 13 11 16 16 C 1.38241 * 120.18735 * 180.02562 * 15 14 13 17 17 C 1.38409 * 119.96473 * 359.96894 * 16 15 14 18 18 C 1.39412 * 119.98503 * 0.03859 * 17 16 15 19 19 C 1.38450 * 120.04619 * 359.97438 * 18 17 16 20 20 N 1.40217 * 119.27515 * 179.97438 * 18 17 16 21 21 C 1.35084 * 118.99986 * 15.78984 * 20 18 17 22 22 O 1.21289 * 120.13609 * 181.35514 * 21 20 18 23 23 C 1.50746 * 119.74013 * 1.13265 * 21 20 18 24 24 O 1.36081 * 120.58304 * 180.11295 * 17 16 15 25 25 H 0.96999 * 120.00357 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47245 * 60.00687 * 9 7 2 27 27 H 1.08998 * 109.47515 * 299.99800 * 9 7 2 28 28 H 1.08998 * 109.46654 * 60.00318 * 10 9 7 29 29 H 1.08998 * 109.46905 * 300.00167 * 10 9 7 30 30 H 0.97006 * 119.99709 * 5.28192 * 13 11 10 31 31 H 1.08002 * 119.90305 * 359.97438 * 15 14 13 32 32 H 1.07997 * 120.02135 * 179.97438 * 16 15 14 33 33 H 1.08004 * 120.11478 * 180.02562 * 19 18 17 34 34 H 0.96996 * 120.50572 * 195.51386 * 20 18 17 35 35 H 1.08994 * 109.55352 * 208.94669 * 23 21 20 36 36 H 1.09008 * 109.20190 * 89.09446 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 6 1.4921 -4.9671 0.0012 12 8 0.2791 -4.9672 0.0003 13 7 2.1659 -6.1343 0.0016 14 6 1.4701 -7.3450 -0.1105 15 6 0.3104 -7.4109 -0.8716 16 6 -0.3800 -8.6032 -0.9848 17 6 0.0852 -9.7354 -0.3388 18 6 1.2491 -9.6725 0.4261 19 6 1.9403 -8.4783 0.5396 20 7 1.7067 -10.8285 1.0746 21 6 1.2147 -12.0289 0.6980 22 8 1.5778 -13.0397 1.2616 23 6 0.2089 -12.1068 -0.4221 24 8 -0.5832 -10.9162 -0.4435 25 1 -0.4850 0.8400 -0.0004 26 1 0.6249 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8903 28 1 2.8714 -3.6038 0.8923 29 1 2.8729 -3.6046 -0.8877 30 1 3.1329 -6.1361 0.0796 31 1 -0.0536 -6.5278 -1.3758 32 1 -1.2819 -8.6513 -1.5770 33 1 2.8423 -8.4284 1.1316 34 1 2.3695 -10.7675 1.7801 35 1 -0.4387 -12.9705 -0.2714 36 1 0.7359 -12.2095 -1.3707 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589685921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:16 Heat of formation + Delta-G solvation = -108.208931 kcal Electronic energy + Delta-G solvation = -21717.194764 eV Core-core repulsion = 18165.398985 eV Total energy + Delta-G solvation = -3551.795779 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.52279 -41.27951 -39.80241 -38.51659 -36.49898 -35.54450 -35.24340 -33.02241 -31.22578 -30.57875 -28.70651 -27.51132 -24.98042 -24.13562 -23.53329 -21.46329 -20.82011 -19.96590 -19.06950 -18.72802 -18.28496 -17.74817 -17.25572 -17.07885 -16.60499 -16.45080 -15.96863 -15.69720 -15.41510 -15.08130 -14.93448 -14.52024 -14.18120 -14.08495 -14.00833 -13.92582 -13.22839 -12.80404 -12.71466 -12.50348 -12.33241 -12.07766 -11.87806 -11.62618 -11.36434 -11.29945 -10.94343 -10.66866 -10.53071 -9.56756 -8.75630 -8.16199 -6.29661 -0.06530 0.11738 1.15124 1.44263 1.47898 1.55514 1.61594 1.64429 2.04356 2.31749 2.45599 2.65617 2.93072 3.17376 3.57075 3.86344 4.00718 4.09664 4.13963 4.22044 4.37109 4.51814 4.57859 4.65237 4.70799 4.90830 5.09444 5.20368 5.32279 5.42810 5.52642 5.65406 5.66406 5.73755 5.88102 6.19282 6.21863 6.47514 6.65756 6.89036 7.22078 7.40674 8.96017 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.051511 B = 0.002592 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.438729 B =10800.920735 C =11190.695451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.971 3.029 4 H -0.262 1.262 5 H -0.290 1.290 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.040 3.960 10 C -0.117 4.117 11 C 0.514 3.486 12 O -0.560 6.560 13 N -0.660 5.660 14 C 0.152 3.848 15 C -0.128 4.128 16 C -0.087 4.087 17 C 0.052 3.948 18 C 0.110 3.890 19 C -0.138 4.138 20 N -0.650 5.650 21 C 0.491 3.509 22 O -0.548 6.548 23 C 0.049 3.951 24 O -0.309 6.309 25 H 0.262 0.738 26 H -0.014 1.014 27 H -0.016 1.016 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.431 0.569 31 H 0.123 0.877 32 H 0.154 0.846 33 H 0.168 0.832 34 H 0.424 0.576 35 H 0.167 0.833 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.135 -22.956 -1.927 24.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.795 3.205 4 H -0.187 1.187 5 H -0.216 1.216 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.095 0.905 9 C 0.003 3.997 10 C -0.157 4.157 11 C 0.304 3.696 12 O -0.436 6.436 13 N -0.308 5.308 14 C 0.057 3.943 15 C -0.150 4.150 16 C -0.106 4.106 17 C 0.005 3.995 18 C 0.014 3.986 19 C -0.161 4.161 20 N -0.298 5.298 21 C 0.279 3.721 22 O -0.426 6.426 23 C -0.028 4.028 24 O -0.224 6.224 25 H 0.071 0.929 26 H 0.004 0.996 27 H 0.002 0.998 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.271 0.729 31 H 0.141 0.859 32 H 0.171 0.829 33 H 0.186 0.814 34 H 0.264 0.736 35 H 0.184 0.816 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.040 -23.437 -1.765 24.267 hybrid contribution 0.732 1.120 0.470 1.419 sum 6.772 -22.317 -1.294 23.357 Atomic orbital electron populations 1.70160 1.08248 1.27816 1.51516 1.26100 0.95674 1.03841 0.94774 0.85421 0.78072 0.77597 0.79447 1.18694 1.21612 1.18770 1.21695 0.94063 0.91605 1.50672 0.90471 1.18710 0.93760 0.92306 0.94970 1.21666 0.99348 0.89136 1.05502 1.21575 0.88058 0.86353 0.73598 1.90701 1.16350 1.87856 1.48740 1.43532 1.11632 1.02869 1.72764 1.17619 0.94403 0.85980 0.96302 1.21061 0.96182 0.98003 0.99711 1.20482 1.01408 0.89634 0.99074 1.18596 0.92971 0.87524 1.00426 1.17668 0.95165 0.87759 0.98042 1.20414 1.03077 0.89627 1.02964 1.43668 1.43684 1.04341 1.38085 1.22007 0.82193 0.82404 0.85449 1.90806 1.61144 1.34852 1.55758 1.23448 0.93877 0.88206 0.97304 1.86285 1.33805 1.11815 1.90496 0.92919 0.99593 0.99788 0.87138 0.87036 0.72950 0.85899 0.82865 0.81438 0.73572 0.81587 0.85825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.16 13.29 21.45 0.28 -57.88 16 2 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 3 Si 0.97 43.09 29.54 68.60 2.03 45.11 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.54 -29.54 9.11 25.60 0.23 -29.31 16 8 H 0.08 3.78 7.74 -2.91 -0.02 3.76 16 9 C 0.04 2.11 4.26 29.85 0.13 2.24 16 10 C -0.12 -4.17 5.64 29.85 0.17 -4.00 16 11 C 0.51 17.55 7.57 87.66 0.66 18.21 16 12 O -0.56 -24.73 13.67 -3.09 -0.04 -24.78 16 13 N -0.66 -15.19 5.35 -303.37 -1.62 -16.81 16 14 C 0.15 3.54 6.28 38.12 0.24 3.78 16 15 C -0.13 -3.41 8.65 22.42 0.19 -3.21 16 16 C -0.09 -1.92 9.99 22.31 0.22 -1.70 16 17 C 0.05 1.05 6.44 22.59 0.15 1.20 16 18 C 0.11 1.99 6.54 38.13 0.25 2.24 16 19 C -0.14 -2.36 9.86 22.47 0.22 -2.14 16 20 N -0.65 -10.25 5.47 -302.74 -1.66 -11.91 16 21 C 0.49 8.70 7.94 87.62 0.70 9.39 16 22 O -0.55 -13.11 17.95 -3.06 -0.05 -13.16 16 23 C 0.05 0.61 7.16 71.25 0.51 1.12 16 24 O -0.31 -5.65 10.46 -94.47 -0.99 -6.63 16 25 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 26 H -0.01 -0.86 8.10 -2.39 -0.02 -0.87 16 27 H -0.02 -0.98 8.10 -2.39 -0.02 -1.00 16 28 H 0.11 3.35 8.14 -2.39 -0.02 3.34 16 29 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 30 H 0.43 6.13 8.82 -92.70 -0.82 5.31 16 31 H 0.12 3.93 6.40 -2.91 -0.02 3.92 16 32 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 33 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 34 H 0.42 5.15 8.89 -92.71 -0.82 4.33 16 35 H 0.17 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -78.92 316.99 1.59 -77.33 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -0.50 Total: 10.80 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 4.13 Total: -2.08 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -2.99 Total: -86.60 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -1.09 Total: -44.57 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -78.92 1.59 -77.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589685921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.874 kcal (2) G-P(sol) polarization free energy of solvation -78.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds