Wall clock time and date at job start Tue Mar 31 2020 06:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86805 * 120.00161 * 2 1 4 4 H 1.48492 * 109.47332 * 240.00204 * 3 2 1 5 5 H 1.48501 * 109.46984 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46677 * 119.99993 * 3 2 1 7 7 C 1.37880 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99530 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00140 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47336 * 180.02562 * 9 7 2 11 11 C 1.46893 * 111.00382 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47593 * 180.02562 * 11 10 9 13 13 O 1.42896 * 109.47277 * 64.99995 * 12 11 10 14 14 C 1.35677 * 117.00556 * 180.02562 * 13 12 11 15 15 C 1.38912 * 119.68824 * 180.30194 * 14 13 12 16 16 C 1.38380 * 119.11330 * 180.25206 * 15 14 13 17 17 C 1.38830 * 118.47964 * 359.45269 * 16 15 14 18 18 C 1.38038 * 119.29492 * 0.27495 * 17 16 15 19 19 C 1.50696 * 119.58690 * 179.97438 * 18 17 16 20 20 F 1.39899 * 109.47021 * 90.00399 * 19 18 17 21 21 F 1.39902 * 109.47487 * 210.00179 * 19 18 17 22 22 F 1.39902 * 109.47368 * 330.00821 * 19 18 17 23 23 N 1.31969 * 120.83428 * 0.02562 * 18 17 16 24 24 H 0.97005 * 120.00196 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46811 * 60.00316 * 9 7 2 26 26 H 1.08997 * 109.47479 * 300.00443 * 9 7 2 27 27 H 1.00900 * 110.99943 * 56.04794 * 10 9 7 28 28 H 1.09005 * 109.47030 * 60.00240 * 11 10 9 29 29 H 1.08999 * 109.47176 * 300.00477 * 11 10 9 30 30 H 1.09002 * 109.47005 * 305.00144 * 12 11 10 31 31 H 1.09002 * 109.47421 * 184.99941 * 12 11 10 32 32 H 1.08004 * 120.44502 * 359.97438 * 15 14 13 33 33 H 1.08002 * 120.76272 * 179.73247 * 16 15 14 34 34 H 1.08008 * 120.34935 * 180.30490 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 2.5301 -6.0430 -0.0005 13 8 3.2710 -6.0154 1.2211 14 6 4.2280 -6.9635 1.3827 15 6 4.9776 -6.9922 2.5519 16 6 5.9541 -7.9610 2.7020 17 6 6.1395 -8.8786 1.6767 18 6 5.3542 -8.7942 0.5446 19 6 5.5502 -9.7864 -0.5725 20 9 4.7230 -10.8949 -0.3622 21 9 5.2231 -9.1855 -1.7928 22 9 6.8863 -10.2002 -0.5997 23 7 4.4345 -7.8549 0.4278 24 1 -0.4851 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 2.8404 -3.5487 0.7808 28 1 0.8807 -4.9812 -0.8914 29 1 0.8800 -4.9817 0.8885 30 1 3.2118 -5.9179 -0.8418 31 1 2.0134 -6.9986 -0.0905 32 1 4.8035 -6.2653 3.3315 33 1 6.5553 -8.0053 3.5981 34 1 6.8898 -9.6505 1.7642 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591757966.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:18 Heat of formation + Delta-G solvation = -151.704544 kcal Electronic energy + Delta-G solvation = -22260.964757 eV Core-core repulsion = 18165.426127 eV Total energy + Delta-G solvation = -4095.538631 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.40847 -47.96506 -47.82880 -40.99238 -38.35042 -35.29170 -33.20109 -32.62437 -31.54363 -29.29564 -26.93793 -25.81311 -23.75649 -23.05771 -21.89750 -21.17709 -19.32172 -18.79620 -18.72380 -17.65370 -16.59172 -16.51033 -16.26411 -16.15826 -14.83847 -14.77485 -14.69495 -14.52167 -14.31415 -14.10632 -14.04023 -13.99891 -13.99502 -13.73386 -13.04940 -12.94122 -12.50723 -12.31430 -11.65804 -11.53566 -11.22701 -10.97567 -10.64368 -10.62546 -10.44963 -10.13949 -9.89743 -9.20941 -8.90944 -8.48607 -7.34675 -6.03743 -4.05776 0.39261 0.83843 2.13766 2.88303 3.14622 3.24912 3.33707 3.37318 3.40705 3.63395 4.11903 4.34522 4.42500 4.53402 4.55918 4.75347 4.98248 5.05873 5.26652 5.32291 5.44090 5.59000 5.65804 5.78535 5.82719 6.17635 6.22672 7.03773 7.20916 7.31211 7.40151 7.76298 8.10455 8.36824 8.58291 9.02987 9.59049 11.07441 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.027068 B = 0.002878 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.182434 B = 9726.308129 C = 9984.245310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.690 5.690 11 C 0.059 3.941 12 C 0.072 3.928 13 O -0.293 6.293 14 C 0.342 3.658 15 C -0.159 4.159 16 C -0.040 4.040 17 C -0.168 4.168 18 C 0.077 3.923 19 C 0.523 3.477 20 F -0.171 7.171 21 F -0.162 7.162 22 F -0.171 7.171 23 N -0.505 5.505 24 H 0.262 0.738 25 H 0.028 0.972 26 H -0.013 1.013 27 H 0.334 0.666 28 H 0.088 0.912 29 H 0.029 0.971 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.316 -21.784 4.870 25.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.066 3.934 10 N -0.321 5.321 11 C -0.072 4.072 12 C -0.003 4.003 13 O -0.199 6.199 14 C 0.161 3.839 15 C -0.180 4.180 16 C -0.065 4.065 17 C -0.189 4.189 18 C -0.061 4.061 19 C 0.467 3.533 20 F -0.153 7.153 21 F -0.143 7.143 22 F -0.153 7.153 23 N -0.230 5.230 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.005 0.995 27 H 0.151 0.849 28 H 0.106 0.894 29 H 0.048 0.952 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.173 0.827 33 H 0.172 0.828 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 11.599 -21.386 3.549 24.586 hybrid contribution 0.457 0.613 1.183 1.409 sum 12.056 -20.773 4.732 24.480 Atomic orbital electron populations 1.69949 1.06097 1.26939 1.50810 1.24992 0.94889 0.99390 0.95300 0.86525 0.79411 0.82576 0.78675 1.20124 1.21328 1.20248 1.21141 0.93503 0.90224 1.50509 0.91999 1.19566 0.90597 0.87352 0.95840 1.60725 1.21139 1.00953 1.49265 1.22010 0.94143 0.89877 1.01121 1.23011 0.93942 0.99259 0.84092 1.86318 1.45100 1.46734 1.41704 1.19759 0.88402 0.86509 0.89187 1.21421 0.97011 1.01810 0.97778 1.21436 0.95007 0.91653 0.98383 1.21655 1.01487 1.02085 0.93713 1.20483 0.95991 0.95339 0.94307 1.17895 0.73941 0.79695 0.81730 1.93237 1.72260 1.54951 1.94833 1.93256 1.92242 1.83104 1.45744 1.93207 1.34506 1.90992 1.96575 1.66773 1.19941 1.04870 1.31397 0.92828 0.95346 0.99472 0.84888 0.89390 0.95241 0.90370 0.91597 0.82734 0.82822 0.83372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.78 9.32 -34.44 -0.32 -15.10 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.19 5.11 5.44 -4.98 -0.03 5.09 16 10 N -0.69 -15.06 6.49 -115.07 -0.75 -15.81 16 11 C 0.06 1.04 6.11 -3.83 -0.02 1.01 16 12 C 0.07 1.09 5.65 37.15 0.21 1.30 16 13 O -0.29 -4.41 9.64 -18.73 -0.18 -4.59 16 14 C 0.34 4.50 7.49 -17.12 -0.13 4.37 16 15 C -0.16 -1.55 10.04 -39.28 -0.39 -1.95 16 16 C -0.04 -0.29 10.17 -39.31 -0.40 -0.69 16 17 C -0.17 -1.39 9.43 -39.44 -0.37 -1.76 16 18 C 0.08 0.86 6.29 -82.61 -0.52 0.34 16 19 C 0.52 5.67 3.43 36.00 0.12 5.79 16 20 F -0.17 -1.87 17.30 2.25 0.04 -1.83 16 21 F -0.16 -2.05 17.04 2.25 0.04 -2.01 16 22 F -0.17 -1.64 16.44 2.25 0.04 -1.60 16 23 N -0.51 -6.80 8.82 -9.55 -0.08 -6.89 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H -0.01 -0.35 8.14 -51.93 -0.42 -0.77 16 27 H 0.33 7.15 8.28 -39.29 -0.33 6.82 16 28 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 32 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.15 0.56 8.06 -52.49 -0.42 0.13 16 34 H 0.15 0.83 7.59 -52.48 -0.40 0.43 16 LS Contribution 315.57 15.07 4.76 4.76 Total: -1.00 -31.60 315.57 -6.02 -37.63 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -3.65 Total: -0.09 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.95 Total: -0.08 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.09 Total: -48.96 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.18 Total: -4.59 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.11 Total: -5.44 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.60 -6.02 -37.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757966.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.077 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds