Wall clock time and date at job start Tue Mar 31 2020 06:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86805 * 120.00161 * 2 1 4 4 H 1.48492 * 109.47332 * 240.00204 * 3 2 1 5 5 H 1.48501 * 109.46984 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46677 * 119.99993 * 3 2 1 7 7 C 1.37880 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99530 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00140 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47336 * 180.02562 * 9 7 2 11 11 C 1.46893 * 111.00382 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47593 * 180.02562 * 11 10 9 13 13 O 1.42896 * 109.47277 * 64.99995 * 12 11 10 14 14 C 1.35677 * 117.00556 * 180.02562 * 13 12 11 15 15 C 1.38912 * 119.68824 * 180.30194 * 14 13 12 16 16 C 1.38380 * 119.11330 * 180.25206 * 15 14 13 17 17 C 1.38830 * 118.47964 * 359.45269 * 16 15 14 18 18 C 1.38038 * 119.29492 * 0.27495 * 17 16 15 19 19 C 1.50696 * 119.58690 * 179.97438 * 18 17 16 20 20 F 1.39899 * 109.47021 * 90.00399 * 19 18 17 21 21 F 1.39902 * 109.47487 * 210.00179 * 19 18 17 22 22 F 1.39902 * 109.47368 * 330.00821 * 19 18 17 23 23 N 1.31969 * 120.83428 * 0.02562 * 18 17 16 24 24 H 0.97005 * 120.00196 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46811 * 60.00316 * 9 7 2 26 26 H 1.08997 * 109.47479 * 300.00443 * 9 7 2 27 27 H 1.00900 * 110.99943 * 56.04794 * 10 9 7 28 28 H 1.09005 * 109.47030 * 60.00240 * 11 10 9 29 29 H 1.08999 * 109.47176 * 300.00477 * 11 10 9 30 30 H 1.09002 * 109.47005 * 305.00144 * 12 11 10 31 31 H 1.09002 * 109.47421 * 184.99941 * 12 11 10 32 32 H 1.08004 * 120.44502 * 359.97438 * 15 14 13 33 33 H 1.08002 * 120.76272 * 179.73247 * 16 15 14 34 34 H 1.08008 * 120.34935 * 180.30490 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 2.5301 -6.0430 -0.0005 13 8 3.2710 -6.0154 1.2211 14 6 4.2280 -6.9635 1.3827 15 6 4.9776 -6.9922 2.5519 16 6 5.9541 -7.9610 2.7020 17 6 6.1395 -8.8786 1.6767 18 6 5.3542 -8.7942 0.5446 19 6 5.5502 -9.7864 -0.5725 20 9 4.7230 -10.8949 -0.3622 21 9 5.2231 -9.1855 -1.7928 22 9 6.8863 -10.2002 -0.5997 23 7 4.4345 -7.8549 0.4278 24 1 -0.4851 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 2.8404 -3.5487 0.7808 28 1 0.8807 -4.9812 -0.8914 29 1 0.8800 -4.9817 0.8885 30 1 3.2118 -5.9179 -0.8418 31 1 2.0134 -6.9986 -0.0905 32 1 4.8035 -6.2653 3.3315 33 1 6.5553 -8.0053 3.5981 34 1 6.8898 -9.6505 1.7642 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591757966.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:13 Heat of formation + Delta-G solvation = -174.587959 kcal Electronic energy + Delta-G solvation = -22261.957056 eV Core-core repulsion = 18165.426127 eV Total energy + Delta-G solvation = -4096.530930 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 12.31 seconds Orbital eigenvalues (eV) -51.25429 -48.77819 -48.72627 -41.84141 -39.38500 -37.02838 -34.66174 -33.93427 -32.53127 -30.85121 -28.09269 -27.39695 -24.72787 -24.00661 -23.63098 -22.65560 -20.18995 -19.63739 -19.60145 -18.69581 -18.51529 -17.38306 -17.24260 -17.17086 -16.69564 -16.16171 -15.66488 -15.59894 -15.28086 -15.25379 -15.16019 -14.88363 -14.87469 -14.65687 -14.36054 -14.29052 -13.76866 -13.56422 -13.14133 -13.08133 -12.94050 -12.66000 -12.38900 -12.14331 -11.89888 -11.31661 -11.15987 -10.96644 -10.66651 -9.78509 -9.19310 -8.23518 -6.35020 -0.36255 0.11107 1.32364 1.41233 1.45131 1.53195 1.91785 2.36075 2.39877 2.40562 2.83394 3.09781 3.28943 3.47319 3.54859 3.79187 3.89886 3.97215 4.12653 4.25862 4.32980 4.37385 4.69422 4.75624 4.84055 4.98932 5.06685 5.23884 5.27710 5.58859 5.98764 6.07411 6.38833 6.45194 6.66354 6.85380 7.35791 8.88030 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.027068 B = 0.002878 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.182434 B = 9726.308129 C = 9984.245310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.207 3.793 10 N -0.689 5.689 11 C 0.060 3.940 12 C 0.089 3.911 13 O -0.312 6.312 14 C 0.309 3.691 15 C -0.159 4.159 16 C -0.023 4.023 17 C -0.152 4.152 18 C 0.051 3.949 19 C 0.525 3.475 20 F -0.174 7.174 21 F -0.178 7.178 22 F -0.162 7.162 23 N -0.534 5.534 24 H 0.266 0.734 25 H 0.004 0.996 26 H -0.037 1.037 27 H 0.338 0.662 28 H 0.091 0.909 29 H 0.030 0.970 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.170 0.830 33 H 0.201 0.799 34 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.597 -22.246 6.283 27.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.577 4.577 8 H 0.081 0.919 9 C 0.079 3.921 10 N -0.320 5.320 11 C -0.070 4.070 12 C 0.014 3.986 13 O -0.219 6.219 14 C 0.129 3.871 15 C -0.179 4.179 16 C -0.047 4.047 17 C -0.172 4.172 18 C -0.086 4.086 19 C 0.470 3.530 20 F -0.155 7.155 21 F -0.159 7.159 22 F -0.144 7.144 23 N -0.259 5.259 24 H 0.075 0.925 25 H 0.022 0.978 26 H -0.019 1.019 27 H 0.155 0.845 28 H 0.109 0.891 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.188 0.812 33 H 0.218 0.782 34 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 13.904 -21.893 4.962 26.406 hybrid contribution -0.188 0.613 0.790 1.018 sum 13.716 -21.280 5.752 25.963 Atomic orbital electron populations 1.70077 1.07810 1.28169 1.51317 1.25967 0.95822 1.03431 0.94450 0.85360 0.78107 0.77479 0.79198 1.19380 1.20663 1.18963 1.21505 0.93790 0.91464 1.50976 0.91857 1.19230 0.90622 0.88773 0.93454 1.60592 1.20498 1.01435 1.49479 1.22058 0.94883 0.88736 1.01302 1.22645 0.93210 0.98449 0.84320 1.86255 1.46213 1.48263 1.41144 1.20096 0.89316 0.86970 0.90730 1.21769 0.96731 1.02659 0.96771 1.21993 0.93819 0.89607 0.99323 1.22115 1.00508 1.02278 0.92340 1.20697 0.96913 0.95463 0.95558 1.17924 0.74187 0.79656 0.81271 1.93229 1.72433 1.55057 1.94785 1.93220 1.92441 1.83424 1.46807 1.93218 1.33745 1.90897 1.96510 1.66598 1.21260 1.05753 1.32290 0.92518 0.97818 1.01893 0.84522 0.89076 0.95166 0.91559 0.90152 0.81211 0.78163 0.80216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 2 C 0.00 0.09 5.46 84.66 0.46 0.56 16 3 Si 0.97 44.56 29.54 68.60 2.03 46.58 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.54 -31.37 9.32 25.60 0.24 -31.13 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 9 C 0.21 11.34 5.44 85.56 0.47 11.81 16 10 N -0.69 -30.86 6.49 -517.97 -3.36 -34.22 16 11 C 0.06 2.17 6.11 86.30 0.53 2.69 16 12 C 0.09 2.76 5.65 71.98 0.41 3.17 16 13 O -0.31 -9.47 9.64 -89.94 -0.87 -10.34 16 14 C 0.31 7.95 7.49 84.79 0.63 8.58 16 15 C -0.16 -2.74 10.04 22.47 0.23 -2.51 16 16 C -0.02 -0.24 10.17 22.45 0.23 -0.01 16 17 C -0.15 -2.00 9.43 22.36 0.21 -1.79 16 18 C 0.05 1.07 6.29 42.49 0.27 1.33 16 19 C 0.52 10.95 3.43 71.23 0.24 11.19 16 20 F -0.17 -3.66 17.30 44.97 0.78 -2.88 16 21 F -0.18 -4.52 17.04 44.97 0.77 -3.76 16 22 F -0.16 -2.83 16.44 44.97 0.74 -2.09 16 23 N -0.53 -14.22 8.82 -297.00 -2.62 -16.84 16 24 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 25 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 26 H -0.04 -2.14 8.14 -2.39 -0.02 -2.16 16 27 H 0.34 14.71 8.28 -89.69 -0.74 13.97 16 28 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 29 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 2.19 8.10 -2.39 -0.02 2.17 16 31 H 0.08 2.23 8.10 -2.39 -0.02 2.21 16 32 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 33 H 0.20 0.24 8.06 -2.91 -0.02 0.22 16 34 H 0.18 1.19 7.59 -2.91 -0.02 1.17 16 Total: -1.00 -69.85 315.57 2.06 -67.79 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.40 Total: 8.47 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 3.91 Total: 3.88 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -5.70 Total: -107.66 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.87 Total: -10.34 kcal Atomic # 9 Polarization: -11.01 SS G_CDS: 2.28 Total: -8.73 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -69.85 2.06 -67.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757966.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.798 kcal (2) G-P(sol) polarization free energy of solvation -69.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.31 seconds