Wall clock time and date at job start Tue Mar 31 2020 07:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.28859 * 124.76791 * 2 1 4 4 C 1.32466 * 117.10824 * 180.19308 * 3 2 1 5 5 C 1.48508 * 122.94379 * 179.74677 * 4 3 2 6 6 C 1.36448 * 126.89366 * 359.70939 * 5 4 3 7 7 N 1.35345 * 106.03173 * 179.97438 * 6 5 4 8 8 C 1.46502 * 125.77226 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.46965 * 123.50650 * 8 7 6 10 10 C 1.50691 * 115.55311 * 279.11425 * 9 8 7 11 11 H 1.08003 * 120.00386 * 144.79096 * 10 9 8 12 12 C 1.37875 * 120.00210 * 324.79069 * 10 9 8 13 13 N 1.31518 * 120.00058 * 340.96717 * 12 10 9 14 14 Si 1.86800 * 120.00309 * 160.96743 * 12 10 9 15 15 H 1.48494 * 109.47366 * 90.00057 * 14 12 10 16 16 H 1.48503 * 109.47137 * 210.00191 * 14 12 10 17 17 H 1.48499 * 109.46834 * 330.00109 * 14 12 10 18 18 C 1.53001 * 117.49520 * 133.40455 * 9 8 7 19 19 C 1.52991 * 60.00210 * 252.51480 * 18 9 8 20 20 N 1.28661 * 108.45830 * 359.97438 * 7 6 5 21 21 N 1.28608 * 110.48364 * 0.02562 * 20 7 6 22 22 C 1.34722 * 114.11380 * 359.48186 * 4 3 2 23 23 S 1.70915 * 124.76856 * 179.64951 * 2 1 3 24 24 H 1.08996 * 109.47156 * 180.32605 * 1 2 3 25 25 H 1.08996 * 109.47428 * 300.32525 * 1 2 3 26 26 H 1.09001 * 109.46958 * 60.32301 * 1 2 3 27 27 H 1.08003 * 126.98204 * 0.02562 * 6 5 4 28 28 H 1.09003 * 109.47018 * 243.51008 * 8 7 6 29 29 H 1.09000 * 109.46474 * 3.51173 * 8 7 6 30 30 H 0.96996 * 120.00362 * 185.01237 * 13 12 10 31 31 H 1.09005 * 117.49843 * 0.02562 * 18 9 8 32 32 H 1.08995 * 117.50023 * 145.02037 * 18 9 8 33 33 H 1.09001 * 117.49709 * 252.51212 * 19 18 9 34 34 H 1.08999 * 117.50184 * 107.49271 * 19 18 9 35 35 H 1.07998 * 126.05604 * 180.28762 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2419 1.0585 0.0000 4 6 3.5547 0.8820 -0.0040 5 6 4.5212 2.0095 -0.0100 6 6 4.2258 3.3416 -0.0178 7 7 5.4149 3.9881 -0.0204 8 6 5.5994 5.4415 -0.0279 9 6 6.4528 5.8534 1.1734 10 6 5.7181 5.9672 2.4841 11 1 6.2099 5.6897 3.4048 12 6 4.4180 6.4256 2.5082 13 7 3.9413 7.1052 1.4881 14 14 3.3335 6.0815 3.9898 15 1 3.4776 7.1830 4.9752 16 1 1.9166 5.9885 3.5551 17 1 3.7442 4.7995 4.6167 18 6 7.6035 6.8296 0.9208 19 6 7.8997 5.3578 1.2151 20 7 6.3557 3.1106 -0.0140 21 7 5.8631 1.9226 -0.0079 22 6 3.9364 -0.4100 0.0036 23 16 2.4817 -1.4040 0.0086 24 1 -0.3633 -1.0276 0.0058 25 1 -0.3634 0.5188 0.8870 26 1 -0.3633 0.5088 -0.8929 27 1 3.2429 3.7891 -0.0205 28 1 6.1006 5.7393 -0.9489 29 1 4.6275 5.9313 0.0318 30 1 3.0522 7.4900 1.5346 31 1 7.7522 7.1787 -0.1010 32 1 7.8292 7.5546 1.7028 33 1 8.3203 5.1144 2.1908 34 1 8.2436 4.7382 0.3869 35 1 4.9538 -0.7723 0.0065 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594651361.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:34 Heat of formation + Delta-G solvation = 165.842383 kcal Electronic energy + Delta-G solvation = -20283.847985 eV Core-core repulsion = 17218.981585 eV Total energy + Delta-G solvation = -3064.866400 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.49753 -39.56316 -36.99792 -33.44482 -32.49290 -32.31624 -30.15326 -28.22934 -26.88076 -25.65486 -24.38645 -21.80942 -21.23409 -21.13768 -19.79391 -19.15260 -17.75150 -16.70059 -16.05933 -15.51076 -15.12369 -14.89240 -14.75260 -14.24800 -13.85546 -13.64769 -13.39187 -13.21336 -12.69952 -12.28766 -11.98712 -11.82465 -11.60462 -11.19677 -11.11955 -10.90003 -10.60007 -10.38664 -10.31470 -10.07419 -9.61823 -9.51450 -9.39920 -9.36467 -9.06693 -8.88839 -8.31156 -7.98225 -6.35376 -4.31179 0.71151 1.36413 1.71941 2.17361 2.60535 3.14020 3.21575 3.24049 3.31205 3.66623 3.90826 4.19756 4.72808 4.78474 5.11607 5.26452 5.34103 5.36865 5.43674 5.59540 5.65840 5.74120 5.83340 5.94902 6.09266 6.24612 6.27273 6.38461 6.59080 6.68788 6.73981 6.95320 7.13891 7.25244 7.43978 7.69534 7.79014 8.14976 8.62455 9.17894 9.26330 10.68444 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.017402 B = 0.005084 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.618575 B = 5506.070978 C = 6573.005887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.050 3.950 3 N -0.463 5.463 4 C 0.168 3.832 5 C 0.009 3.991 6 C 0.005 3.995 7 N -0.250 5.250 8 C 0.128 3.872 9 C 0.029 3.971 10 C -0.484 4.484 11 H 0.065 0.935 12 C 0.070 3.930 13 N -0.883 5.883 14 Si 0.889 3.111 15 H -0.277 1.277 16 H -0.280 1.280 17 H -0.271 1.271 18 C -0.190 4.190 19 C -0.189 4.189 20 N -0.075 5.075 21 N -0.275 5.275 22 C -0.235 4.235 23 S 0.107 5.893 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.187 0.813 28 H 0.068 0.932 29 H 0.156 0.844 30 H 0.269 0.731 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.642 -11.727 -4.869 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.229 4.229 3 N -0.178 5.178 4 C 0.037 3.963 5 C -0.131 4.131 6 C -0.150 4.150 7 N -0.040 5.040 8 C 0.009 3.991 9 C 0.027 3.973 10 C -0.521 4.521 11 H 0.083 0.917 12 C -0.132 4.132 13 N -0.521 5.521 14 Si 0.716 3.284 15 H -0.203 1.203 16 H -0.205 1.205 17 H -0.196 1.196 18 C -0.228 4.228 19 C -0.227 4.227 20 N -0.054 5.054 21 N -0.142 5.142 22 C -0.375 4.375 23 S 0.360 5.640 24 H 0.097 0.903 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.204 0.796 28 H 0.087 0.913 29 H 0.173 0.827 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.758 -12.410 -4.946 14.547 hybrid contribution -0.995 1.073 0.877 1.706 sum -6.753 -11.337 -4.069 13.809 Atomic orbital electron populations 1.20421 0.85103 1.03326 1.04602 1.26885 1.01642 0.90682 1.03695 1.65976 1.04118 1.31623 1.16093 1.17287 0.87350 0.90132 1.01528 1.19083 0.90813 0.90270 1.12933 1.23502 0.93036 0.92041 1.06376 1.47614 1.03637 1.10298 1.42468 1.22514 1.08367 0.70184 0.98069 1.19036 0.85678 0.98620 0.93938 1.20541 0.96748 1.43570 0.91270 0.91710 1.24944 0.97745 0.93808 0.96688 1.69631 1.18857 1.32390 1.31209 0.86594 0.79855 0.79301 0.82641 1.20312 1.20534 1.19599 1.23036 1.07609 0.92363 0.99822 1.22896 1.01992 0.96466 1.01341 1.78114 1.16380 0.91901 1.19054 1.75110 1.06305 1.14875 1.17887 1.26917 1.03045 0.95122 1.12456 1.83766 0.97901 1.12951 1.69355 0.90329 0.89343 0.89380 0.79597 0.91333 0.82749 0.92104 0.91370 0.89875 0.90514 0.89907 0.79948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.47 36.01 0.38 -0.25 16 2 C 0.05 0.64 7.37 -13.52 -0.10 0.54 16 3 N -0.46 -7.63 10.44 -8.40 -0.09 -7.72 16 4 C 0.17 2.98 6.71 -84.60 -0.57 2.41 16 5 C 0.01 0.18 7.06 -83.12 -0.59 -0.41 16 6 C 0.01 0.11 11.45 -16.65 -0.19 -0.08 16 7 N -0.25 -5.46 3.43 -60.96 -0.21 -5.67 16 8 C 0.13 2.81 6.14 -4.04 -0.02 2.78 16 9 C 0.03 0.67 1.93 -155.66 -0.30 0.37 16 10 C -0.48 -12.70 9.00 -34.45 -0.31 -13.01 16 11 H 0.06 1.75 7.89 -52.48 -0.41 1.34 16 12 C 0.07 1.80 5.10 -17.82 -0.09 1.71 16 13 N -0.88 -22.38 10.93 55.43 0.61 -21.78 16 14 Si 0.89 20.41 29.58 -169.99 -5.03 15.38 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 18 C -0.19 -4.08 9.88 -26.74 -0.26 -4.34 16 19 C -0.19 -4.13 9.16 -26.74 -0.24 -4.37 16 20 N -0.07 -1.67 11.54 60.35 0.70 -0.98 16 21 N -0.27 -5.93 12.36 33.06 0.41 -5.52 16 22 C -0.24 -3.49 11.13 29.49 0.33 -3.16 16 23 S 0.11 1.21 23.15 -107.50 -2.49 -1.28 16 24 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.19 3.57 8.06 -52.48 -0.42 3.15 16 28 H 0.07 1.37 7.94 -51.93 -0.41 0.96 16 29 H 0.16 3.59 5.17 -51.93 -0.27 3.32 16 30 H 0.27 6.49 8.32 -40.82 -0.34 6.15 16 31 H 0.07 1.33 8.08 -51.93 -0.42 0.92 16 32 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 33 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 34 H 0.08 1.75 7.47 -51.93 -0.39 1.36 16 35 H 0.18 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 319.80 15.07 4.82 4.82 Total: -1.00 -28.58 319.80 -7.25 -35.83 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -4.00 Total: 4.71 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -1.97 Total: -17.80 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 1.41 Total: -41.66 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.49 Total: -1.28 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.58 -7.25 -35.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594651361.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.674 kcal (2) G-P(sol) polarization free energy of solvation -28.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds