Wall clock time and date at job start Tue Mar 31 2020 07:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.28859 * 124.76791 * 2 1 4 4 C 1.32466 * 117.10824 * 180.19308 * 3 2 1 5 5 C 1.48508 * 122.94379 * 179.74677 * 4 3 2 6 6 C 1.36448 * 126.89366 * 359.70939 * 5 4 3 7 7 N 1.35345 * 106.03173 * 179.97438 * 6 5 4 8 8 C 1.46502 * 125.77226 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.46965 * 123.50650 * 8 7 6 10 10 C 1.50691 * 115.55311 * 279.11425 * 9 8 7 11 11 H 1.08003 * 120.00386 * 144.79096 * 10 9 8 12 12 C 1.37875 * 120.00210 * 324.79069 * 10 9 8 13 13 N 1.31518 * 120.00058 * 340.96717 * 12 10 9 14 14 Si 1.86800 * 120.00309 * 160.96743 * 12 10 9 15 15 H 1.48494 * 109.47366 * 90.00057 * 14 12 10 16 16 H 1.48503 * 109.47137 * 210.00191 * 14 12 10 17 17 H 1.48499 * 109.46834 * 330.00109 * 14 12 10 18 18 C 1.53001 * 117.49520 * 133.40455 * 9 8 7 19 19 C 1.52991 * 60.00210 * 252.51480 * 18 9 8 20 20 N 1.28661 * 108.45830 * 359.97438 * 7 6 5 21 21 N 1.28608 * 110.48364 * 0.02562 * 20 7 6 22 22 C 1.34722 * 114.11380 * 359.48186 * 4 3 2 23 23 S 1.70915 * 124.76856 * 179.64951 * 2 1 3 24 24 H 1.08996 * 109.47156 * 180.32605 * 1 2 3 25 25 H 1.08996 * 109.47428 * 300.32525 * 1 2 3 26 26 H 1.09001 * 109.46958 * 60.32301 * 1 2 3 27 27 H 1.08003 * 126.98204 * 0.02562 * 6 5 4 28 28 H 1.09003 * 109.47018 * 243.51008 * 8 7 6 29 29 H 1.09000 * 109.46474 * 3.51173 * 8 7 6 30 30 H 0.96996 * 120.00362 * 185.01237 * 13 12 10 31 31 H 1.09005 * 117.49843 * 0.02562 * 18 9 8 32 32 H 1.08995 * 117.50023 * 145.02037 * 18 9 8 33 33 H 1.09001 * 117.49709 * 252.51212 * 19 18 9 34 34 H 1.08999 * 117.50184 * 107.49271 * 19 18 9 35 35 H 1.07998 * 126.05604 * 180.28762 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2419 1.0585 0.0000 4 6 3.5547 0.8820 -0.0040 5 6 4.5212 2.0095 -0.0100 6 6 4.2258 3.3416 -0.0178 7 7 5.4149 3.9881 -0.0204 8 6 5.5994 5.4415 -0.0279 9 6 6.4528 5.8534 1.1734 10 6 5.7181 5.9672 2.4841 11 1 6.2099 5.6897 3.4048 12 6 4.4180 6.4256 2.5082 13 7 3.9413 7.1052 1.4881 14 14 3.3335 6.0815 3.9898 15 1 3.4776 7.1830 4.9752 16 1 1.9166 5.9885 3.5551 17 1 3.7442 4.7995 4.6167 18 6 7.6035 6.8296 0.9208 19 6 7.8997 5.3578 1.2151 20 7 6.3557 3.1106 -0.0140 21 7 5.8631 1.9226 -0.0079 22 6 3.9364 -0.4100 0.0036 23 16 2.4817 -1.4040 0.0086 24 1 -0.3633 -1.0276 0.0058 25 1 -0.3634 0.5188 0.8870 26 1 -0.3633 0.5088 -0.8929 27 1 3.2429 3.7891 -0.0205 28 1 6.1006 5.7393 -0.9489 29 1 4.6275 5.9313 0.0318 30 1 3.0522 7.4900 1.5346 31 1 7.7522 7.1787 -0.1010 32 1 7.8292 7.5546 1.7028 33 1 8.3203 5.1144 2.1908 34 1 8.2436 4.7382 0.3869 35 1 4.9538 -0.7723 0.0065 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594651361.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:34 Heat of formation + Delta-G solvation = 149.540449 kcal Electronic energy + Delta-G solvation = -20284.554890 eV Core-core repulsion = 17218.981585 eV Total energy + Delta-G solvation = -3065.573305 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.11545 -40.68520 -38.76476 -34.97028 -34.38665 -33.57852 -31.52803 -29.34725 -28.51942 -27.57763 -25.61304 -23.33416 -22.89457 -22.65889 -21.27225 -20.63087 -19.05156 -18.33231 -17.66685 -17.17262 -16.75703 -16.35607 -15.92266 -15.74693 -15.42991 -15.07753 -14.86162 -14.25769 -13.86286 -13.58066 -13.47846 -13.05616 -12.98492 -12.94139 -12.79393 -12.58941 -12.45643 -12.08887 -11.99779 -11.79327 -11.27212 -10.95946 -10.78976 -10.66254 -10.62008 -10.39709 -10.18008 -9.26939 -8.29165 -6.29880 -0.37468 0.37455 0.65588 0.68924 1.11023 1.29973 1.36906 1.45172 1.59600 2.27752 2.30252 2.75985 2.83912 3.55380 3.65607 3.81928 4.04195 4.07249 4.11790 4.34248 4.45724 4.47066 4.55723 4.62918 4.72097 4.72438 4.89420 4.95511 4.97847 5.06949 5.18882 5.24594 5.34898 5.51977 5.73846 5.78335 6.24431 6.62438 6.71409 7.28367 7.53580 8.73747 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.017402 B = 0.005084 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.618575 B = 5506.070978 C = 6573.005887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.042 3.958 3 N -0.500 5.500 4 C 0.134 3.866 5 C 0.014 3.986 6 C -0.010 4.010 7 N -0.253 5.253 8 C 0.134 3.866 9 C 0.003 3.997 10 C -0.511 4.511 11 H 0.044 0.956 12 C 0.044 3.956 13 N -0.890 5.890 14 Si 0.933 3.067 15 H -0.271 1.271 16 H -0.270 1.270 17 H -0.286 1.286 18 C -0.176 4.176 19 C -0.180 4.180 20 N -0.094 5.094 21 N -0.287 5.287 22 C -0.248 4.248 23 S 0.197 5.803 24 H 0.110 0.890 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.195 0.805 28 H 0.087 0.913 29 H 0.144 0.856 30 H 0.273 0.727 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.192 -13.226 -5.294 16.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.236 4.236 3 N -0.217 5.217 4 C 0.002 3.998 5 C -0.126 4.126 6 C -0.165 4.165 7 N -0.044 5.044 8 C 0.015 3.985 9 C 0.002 3.998 10 C -0.548 4.548 11 H 0.062 0.938 12 C -0.157 4.157 13 N -0.528 5.528 14 Si 0.759 3.241 15 H -0.196 1.196 16 H -0.195 1.195 17 H -0.212 1.212 18 C -0.215 4.215 19 C -0.218 4.218 20 N -0.074 5.074 21 N -0.154 5.154 22 C -0.389 4.389 23 S 0.452 5.548 24 H 0.128 0.872 25 H 0.110 0.890 26 H 0.115 0.885 27 H 0.212 0.788 28 H 0.105 0.895 29 H 0.161 0.839 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -7.313 -13.917 -5.377 16.616 hybrid contribution -0.581 1.385 1.013 1.811 sum -7.894 -12.532 -4.364 15.441 Atomic orbital electron populations 1.20653 0.82214 1.05587 1.05118 1.27657 1.03436 0.90859 1.01674 1.65972 1.03788 1.33720 1.18213 1.17249 0.87830 0.90170 1.04561 1.19549 0.90786 0.91226 1.11060 1.23737 0.93091 0.92458 1.07190 1.47594 1.03947 1.10167 1.42705 1.22351 1.07542 0.70375 0.98199 1.19110 0.86449 1.00503 0.93713 1.20644 0.97793 1.44616 0.91742 0.93811 1.25359 0.98214 0.93608 0.98565 1.69675 1.19146 1.32196 1.31791 0.85921 0.79039 0.78394 0.80701 1.19627 1.19517 1.21212 1.23042 1.05579 0.91918 1.00934 1.22818 1.00762 0.96995 1.01187 1.78049 1.16878 0.92294 1.20164 1.75050 1.07192 1.14623 1.18487 1.27180 1.05244 0.95450 1.11008 1.83422 0.94272 1.10035 1.67082 0.87179 0.89045 0.88526 0.78835 0.89522 0.83919 0.91678 0.89077 0.90385 0.91311 0.89169 0.79661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.47 71.24 0.75 -0.30 16 2 C 0.04 0.98 7.37 88.55 0.65 1.63 16 3 N -0.50 -16.09 10.44 -180.49 -1.88 -17.97 16 4 C 0.13 4.69 6.71 40.98 0.27 4.96 16 5 C 0.01 0.58 7.06 41.06 0.29 0.87 16 6 C -0.01 -0.43 11.45 83.73 0.96 0.52 16 7 N -0.25 -11.21 3.43 -346.78 -1.19 -12.39 16 8 C 0.13 5.93 6.14 86.38 0.53 6.46 16 9 C 0.00 0.17 1.93 -52.93 -0.10 0.06 16 10 C -0.51 -27.24 9.00 25.60 0.23 -27.01 16 11 H 0.04 2.44 7.89 -2.91 -0.02 2.42 16 12 C 0.04 2.26 5.10 84.65 0.43 2.69 16 13 N -0.89 -44.97 10.93 21.45 0.23 -44.73 16 14 Si 0.93 41.98 29.58 68.60 2.03 44.01 16 15 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 18 C -0.18 -7.45 9.88 30.59 0.30 -7.15 16 19 C -0.18 -7.85 9.16 30.59 0.28 -7.57 16 20 N -0.09 -4.29 11.54 37.02 0.43 -3.86 16 21 N -0.29 -12.57 12.36 -49.31 -0.61 -13.18 16 22 C -0.25 -7.06 11.13 67.01 0.75 -6.32 16 23 S 0.20 3.85 23.15 -56.49 -1.31 2.54 16 24 H 0.11 0.81 8.12 -2.39 -0.02 0.79 16 25 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 27 H 0.19 7.63 8.06 -2.91 -0.02 7.61 16 28 H 0.09 3.42 7.94 -2.39 -0.02 3.40 16 29 H 0.14 6.67 5.17 -2.39 -0.01 6.66 16 30 H 0.27 13.05 8.32 -92.71 -0.77 12.28 16 31 H 0.09 3.41 8.08 -2.38 -0.02 3.39 16 32 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 33 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.09 3.78 7.47 -2.39 -0.02 3.76 16 35 H 0.19 4.98 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -61.67 319.80 4.16 -57.51 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 1.11 Total: 19.23 kcal Atomic # 6 Polarization: -36.49 SS G_CDS: 5.34 Total: -31.15 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -3.02 Total: -92.14 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.31 Total: 2.54 kcal Total: -61.67 4.16 -57.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594651361.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.049 kcal (2) G-P(sol) polarization free energy of solvation -61.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds