Wall clock time and date at job start Tue Mar 31 2020 08:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40063 * 125.87638 * 2 1 4 4 C 1.30271 * 109.68158 * 180.02562 * 3 2 1 5 5 C 1.41130 * 108.47199 * 0.02562 * 4 3 2 6 6 C 1.36312 * 125.87450 * 180.02562 * 2 1 3 7 7 N 1.33224 * 134.60808 * 359.97000 * 6 2 1 8 8 C 1.31524 * 120.69759 * 180.02562 * 7 6 2 9 9 N 1.32094 * 122.65821 * 0.02562 * 8 7 6 10 10 C 1.32945 * 121.17929 * 0.02562 * 9 8 7 11 11 S 1.76203 * 120.82081 * 179.97438 * 10 9 8 12 12 C 1.81004 * 99.99583 * 359.97438 * 11 10 9 13 13 C 1.53002 * 109.46817 * 175.15485 * 12 11 10 14 14 C 1.50700 * 115.55245 * 39.81927 * 13 12 11 15 15 H 1.07992 * 120.00046 * 272.70150 * 14 13 12 16 16 C 1.37882 * 119.99803 * 92.69707 * 14 13 12 17 17 N 1.31516 * 119.99870 * 173.34359 * 16 14 13 18 18 Si 1.86800 * 120.00069 * 353.34012 * 16 14 13 19 19 H 1.48503 * 109.46748 * 94.21529 * 18 16 14 20 20 H 1.48497 * 109.47261 * 214.21270 * 18 16 14 21 21 H 1.48500 * 109.47077 * 334.21791 * 18 16 14 22 22 C 1.53004 * 117.49927 * 254.10836 * 13 12 11 23 23 C 1.53004 * 60.00070 * 252.51510 * 22 13 12 24 24 H 1.09004 * 109.47005 * 269.97455 * 1 2 3 25 25 H 1.09005 * 109.47093 * 29.97418 * 1 2 3 26 26 H 1.08997 * 109.47210 * 149.97820 * 1 2 3 27 27 H 1.07993 * 125.76105 * 179.97438 * 4 3 2 28 28 H 1.08002 * 118.66945 * 179.97438 * 8 7 6 29 29 H 1.08994 * 109.47272 * 295.15219 * 12 11 10 30 30 H 1.09007 * 109.47228 * 55.15828 * 12 11 10 31 31 H 0.96996 * 119.99672 * 180.02562 * 17 16 14 32 32 H 1.08999 * 117.49830 * 0.02562 * 22 13 12 33 33 H 1.08994 * 117.49659 * 145.02278 * 22 13 12 34 34 H 1.09001 * 117.49270 * 252.51134 * 23 22 13 35 35 H 1.08988 * 117.51599 * 107.48460 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2858 1.1349 0.0000 4 6 3.5369 0.7716 -0.0005 5 6 3.5929 -0.6386 -0.0015 6 6 2.2638 -1.1045 -0.0005 7 7 2.0435 -2.4184 -0.0006 8 6 3.0479 -3.2676 -0.0006 9 7 4.3103 -2.8786 -0.0001 10 6 4.6331 -1.5890 0.0011 11 16 6.3202 -1.0806 0.0024 12 6 7.1353 -2.6967 0.0026 13 6 8.6484 -2.5047 -0.1181 14 6 9.2225 -1.3550 0.6690 15 1 9.2578 -0.3671 0.2342 16 6 9.7028 -1.5645 1.9444 17 7 10.3217 -0.5945 2.5815 18 14 9.4742 -3.2257 2.7675 19 1 10.6808 -4.0610 2.5399 20 1 9.2741 -3.0322 4.2261 21 1 8.2862 -3.9047 2.1906 22 6 9.2972 -2.8337 -1.4642 23 6 9.5103 -3.7603 -0.2654 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8903 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 4.3873 1.4371 -0.0011 28 1 2.8317 -4.3258 -0.0003 29 1 6.9082 -3.2181 0.9324 30 1 6.7753 -3.2853 -0.8414 31 1 10.6598 -0.7420 3.4786 32 1 8.6459 -3.1866 -2.2639 33 1 10.1393 -2.2185 -1.7806 34 1 10.4927 -3.7546 0.2067 35 1 8.9994 -4.7230 -0.2760 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594883114.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:08 Heat of formation + Delta-G solvation = 127.509057 kcal Electronic energy + Delta-G solvation = -20014.948279 eV Core-core repulsion = 16948.419621 eV Total energy + Delta-G solvation = -3066.528658 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 3.77 seconds Orbital eigenvalues (eV) -43.02372 -39.90376 -38.72204 -35.28187 -34.21062 -33.66470 -31.74939 -29.74793 -28.11569 -27.52613 -25.86851 -24.43438 -23.28963 -22.40928 -20.95875 -19.43156 -19.01905 -18.41574 -17.78233 -17.17663 -16.85786 -16.24906 -15.67891 -15.42734 -15.26444 -15.23333 -14.95947 -14.79748 -14.51376 -13.75356 -13.57145 -13.51327 -12.98089 -12.74354 -12.71519 -12.43363 -12.08481 -11.98917 -11.95859 -11.77656 -11.41780 -10.83359 -10.67812 -10.54662 -10.30817 -10.19076 -9.93676 -8.65175 -8.26918 -6.32527 -0.64424 0.10550 0.46009 1.03547 1.26830 1.36594 1.38379 1.42544 1.53171 2.39172 2.64034 2.98402 3.07140 3.09822 3.23949 3.45927 3.69359 3.78605 4.05299 4.24428 4.28665 4.35913 4.38493 4.43221 4.57543 4.61327 4.80923 4.90257 4.97859 5.08795 5.19268 5.26840 5.46708 5.51736 5.72316 5.91293 6.24380 6.32071 6.75485 7.00916 7.37059 8.87824 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.004611 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.272896 B = 6071.567958 C = 6360.651911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.386 5.386 3 N -0.258 5.258 4 C 0.109 3.891 5 C -0.292 4.292 6 C 0.336 3.664 7 N -0.560 5.560 8 C 0.357 3.643 9 N -0.574 5.574 10 C 0.223 3.777 11 S 0.028 5.972 12 C -0.058 4.058 13 C -0.023 4.023 14 C -0.481 4.481 15 H 0.044 0.956 16 C 0.035 3.965 17 N -0.939 5.939 18 Si 0.924 3.076 19 H -0.269 1.269 20 H -0.303 1.303 21 H -0.233 1.233 22 C -0.158 4.158 23 C -0.186 4.186 24 H 0.085 0.915 25 H 0.108 0.892 26 H 0.100 0.900 27 H 0.220 0.780 28 H 0.240 0.760 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.265 0.735 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.057 -4.346 -6.490 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.176 5.176 3 N -0.072 5.072 4 C -0.087 4.087 5 C -0.312 4.312 6 C 0.088 3.912 7 N -0.285 5.285 8 C 0.063 3.937 9 N -0.298 5.298 10 C -0.042 4.042 11 S 0.272 5.728 12 C -0.207 4.207 13 C -0.025 4.025 14 C -0.520 4.520 15 H 0.063 0.937 16 C -0.164 4.164 17 N -0.578 5.578 18 Si 0.750 3.250 19 H -0.195 1.195 20 H -0.230 1.230 21 H -0.156 1.156 22 C -0.195 4.195 23 C -0.225 4.225 24 H 0.103 0.897 25 H 0.126 0.874 26 H 0.119 0.881 27 H 0.236 0.764 28 H 0.256 0.744 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.720 -3.070 -6.337 19.067 hybrid contribution 0.490 -1.398 0.886 1.726 sum -17.229 -4.467 -5.451 18.615 Atomic orbital electron populations 1.22179 0.70754 1.05930 1.04669 1.48635 1.07633 0.99568 1.61757 1.76963 1.02075 1.07339 1.20835 1.24165 0.95746 0.92824 0.95996 1.19882 0.94785 0.96271 1.20218 1.19269 0.88680 0.89248 0.94043 1.67654 1.37727 0.99119 1.24019 1.25623 0.81679 1.00860 0.85578 1.68994 1.22984 1.14694 1.23096 1.24235 1.00696 0.91004 0.88229 1.86660 0.87958 1.12960 1.85184 1.23344 0.97198 0.94903 1.05255 1.19059 0.88506 0.95697 0.99221 1.20283 1.38942 0.93845 0.98886 0.93749 1.25661 0.93456 0.99637 0.97624 1.70027 1.38743 1.35186 1.13825 0.86112 0.80710 0.81403 0.76769 1.19464 1.23044 1.15640 1.22967 1.03108 1.02417 0.91013 1.23026 1.00994 0.94636 1.03846 0.89691 0.87368 0.88144 0.76397 0.74384 0.90446 0.88326 0.92595 0.87585 0.90081 0.90582 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.65 11.47 127.77 1.47 3.12 16 2 N -0.39 -10.06 4.05 -366.67 -1.48 -11.55 16 3 N -0.26 -7.16 12.45 -56.48 -0.70 -7.87 16 4 C 0.11 3.09 11.93 85.63 1.02 4.11 16 5 C -0.29 -9.30 6.07 -21.28 -0.13 -9.43 16 6 C 0.34 10.08 8.04 134.13 1.08 11.16 16 7 N -0.56 -15.62 10.47 -198.12 -2.07 -17.69 16 8 C 0.36 9.21 12.24 180.87 2.21 11.42 16 9 N -0.57 -17.96 9.23 -195.24 -1.80 -19.76 16 10 C 0.22 7.50 7.06 85.17 0.60 8.10 16 11 S 0.03 1.05 20.87 -56.49 -1.18 -0.13 16 12 C -0.06 -2.18 4.92 71.98 0.35 -1.83 16 13 C -0.02 -0.95 1.12 -52.92 -0.06 -1.01 16 14 C -0.48 -25.13 8.14 25.60 0.21 -24.93 16 15 H 0.04 2.62 8.06 -2.91 -0.02 2.59 16 16 C 0.04 1.94 5.46 84.66 0.46 2.40 16 17 N -0.94 -56.18 13.96 21.45 0.30 -55.88 16 18 Si 0.92 42.46 24.98 68.60 1.71 44.18 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 21 H -0.23 -9.75 5.46 99.48 0.54 -9.21 16 22 C -0.16 -5.64 9.88 30.60 0.30 -5.34 16 23 C -0.19 -6.93 7.53 30.60 0.23 -6.70 16 24 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.22 5.11 8.06 -2.91 -0.02 5.09 16 28 H 0.24 3.88 8.06 -2.91 -0.02 3.86 16 29 H 0.08 3.04 6.58 -2.40 -0.02 3.03 16 30 H 0.10 3.25 7.82 -2.39 -0.02 3.24 16 31 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 32 H 0.11 3.13 8.08 -2.39 -0.02 3.11 16 33 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 34 H 0.08 3.07 6.99 -2.39 -0.02 3.05 16 35 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -66.81 312.23 3.47 -63.34 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.95 Total: 14.28 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 7.75 Total: -8.92 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -5.76 Total: -112.75 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.71 Total: 44.18 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -1.18 Total: -0.13 kcal Total: -66.81 3.47 -63.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594883114.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.848 kcal (2) G-P(sol) polarization free energy of solvation -66.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.77 seconds