Wall clock time and date at job start Tue Mar 31 2020 06:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39852 * 120.21364 * 317.23577 * 3 2 1 5 5 Cl 1.73599 * 120.06159 * 359.97438 * 4 3 2 6 6 C 1.37966 * 119.88279 * 179.72111 * 4 3 2 7 7 C 1.38518 * 120.32919 * 0.29570 * 6 4 3 8 8 C 1.38047 * 120.44422 * 359.97438 * 7 6 4 9 9 C 1.38860 * 120.10122 * 0.02562 * 8 7 6 10 10 N 1.39033 * 120.16393 * 180.02562 * 9 8 7 11 11 C 1.46853 * 110.99546 * 296.04446 * 10 9 8 12 12 C 1.53042 * 109.52184 * 185.84339 * 11 10 9 13 13 C 1.53125 * 109.27666 * 300.81642 * 12 11 10 14 14 C 1.53120 * 109.15804 * 57.65707 * 13 12 11 15 15 H 1.08991 * 109.50497 * 62.32523 * 14 13 12 16 16 C 1.50698 * 109.50130 * 182.40537 * 14 13 12 17 17 H 1.08003 * 120.00025 * 119.99233 * 16 14 13 18 18 C 1.37878 * 120.00057 * 299.99916 * 16 14 13 19 19 N 1.31517 * 120.00238 * 179.97438 * 18 16 14 20 20 Si 1.86801 * 119.99804 * 0.02562 * 18 16 14 21 21 H 1.48495 * 109.47348 * 89.99944 * 20 18 16 22 22 H 1.48504 * 109.46750 * 210.00081 * 20 18 16 23 23 H 1.48500 * 109.47007 * 329.99348 * 20 18 16 24 24 C 1.46850 * 111.00434 * 60.24923 * 10 9 8 25 25 H 1.08000 * 119.83420 * 180.27924 * 6 4 3 26 26 H 1.07998 * 119.77571 * 179.97438 * 7 6 4 27 27 H 1.07992 * 119.95019 * 179.97438 * 8 7 6 28 28 H 1.09000 * 109.45912 * 305.85058 * 11 10 9 29 29 H 1.08989 * 109.46587 * 65.82289 * 11 10 9 30 30 H 1.09000 * 109.50585 * 60.75896 * 12 11 10 31 31 H 1.09002 * 109.50193 * 180.87607 * 12 11 10 32 32 H 1.08995 * 109.52347 * 177.56380 * 13 12 11 33 33 H 1.08996 * 109.51955 * 297.75294 * 13 12 11 34 34 H 0.96995 * 120.00391 * 180.02562 * 19 18 16 35 35 H 1.09000 * 109.46043 * 294.17881 * 24 10 9 36 36 H 1.08999 * 109.46001 * 54.14870 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2722 -0.8863 0.8206 5 17 2.4120 -1.9930 1.8447 6 6 4.6519 -0.8838 0.8109 7 6 5.3440 -0.0026 -0.0034 8 6 4.6627 0.8825 -0.8146 9 6 3.2741 0.8956 -0.8192 10 7 2.5866 1.7861 -1.6361 11 6 2.8545 3.1753 -1.2427 12 6 1.9728 4.1186 -2.0643 13 6 2.2734 3.9231 -3.5529 14 6 2.0330 2.4576 -3.9259 15 1 0.9844 2.2083 -3.7641 16 6 2.3832 2.2436 -5.3759 17 1 3.1540 1.5372 -5.6467 18 6 1.7197 2.9496 -6.3569 19 7 2.0256 2.7632 -7.6223 20 14 0.3871 4.1720 -5.8884 21 1 0.9942 5.5115 -5.6828 22 1 -0.6205 4.2470 -6.9767 23 1 -0.2718 3.7292 -4.6334 24 6 2.9129 1.5625 -3.0503 25 1 5.1948 -1.5722 1.4415 26 1 6.4240 -0.0080 -0.0036 27 1 5.2104 1.5664 -1.4460 28 1 2.6326 3.3019 -0.1830 29 1 3.9035 3.4084 -1.4243 30 1 0.9233 3.8952 -1.8725 31 1 2.1831 5.1505 -1.7830 32 1 1.6172 4.5618 -4.1440 33 1 3.3129 4.1838 -3.7519 34 1 1.5591 3.2601 -8.3124 35 1 3.9618 1.8032 -3.2235 36 1 2.7336 0.5176 -3.3036 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596322177.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:41 Heat of formation + Delta-G solvation = 37.395748 kcal Electronic energy + Delta-G solvation = -20535.372127 eV Core-core repulsion = 17430.599405 eV Total energy + Delta-G solvation = -3104.772722 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 7.85 seconds Orbital eigenvalues (eV) -41.47840 -39.31960 -37.57482 -37.42378 -35.65893 -34.03758 -32.30121 -32.08765 -30.35912 -26.94826 -25.77351 -24.74696 -23.21391 -22.67989 -20.51641 -20.01616 -18.93447 -17.91651 -17.09187 -16.77699 -16.10394 -15.94131 -15.71879 -15.43375 -15.14469 -14.85010 -14.63148 -14.24309 -14.18771 -13.83736 -13.81148 -13.77080 -13.07207 -12.98484 -12.83459 -12.66548 -12.54370 -12.28272 -12.09853 -11.95596 -11.81495 -11.49006 -11.06901 -10.91811 -10.64769 -9.94761 -9.74990 -9.49270 -8.32224 -6.34856 -0.38646 0.03843 0.91846 1.25782 1.34570 1.43691 1.68454 1.92728 2.30016 2.66923 2.73325 2.85631 3.04102 3.88953 3.93259 4.06237 4.08267 4.17025 4.26798 4.29263 4.39438 4.41160 4.56625 4.70002 4.75588 4.88168 4.97491 5.03037 5.10799 5.15356 5.23222 5.29211 5.41632 5.54157 5.62028 5.68537 5.97258 6.28124 6.32963 6.50666 6.72103 7.31030 8.84232 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.023892 B = 0.004517 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.644503 B = 6197.379039 C = 6444.390602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.281 3.719 3 C -0.031 4.031 4 C 0.005 3.995 5 Cl -0.059 7.059 6 C -0.104 4.104 7 C -0.046 4.046 8 C -0.146 4.146 9 C 0.147 3.853 10 N -0.536 5.536 11 C 0.071 3.929 12 C -0.116 4.116 13 C -0.121 4.121 14 C 0.018 3.982 15 H 0.009 0.991 16 C -0.514 4.514 17 H 0.041 0.959 18 C 0.019 3.981 19 N -0.946 5.946 20 Si 0.944 3.056 21 H -0.260 1.260 22 H -0.302 1.302 23 H -0.261 1.261 24 C 0.098 3.902 25 H 0.177 0.823 26 H 0.182 0.818 27 H 0.149 0.851 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.032 0.968 33 H 0.065 0.935 34 H 0.265 0.735 35 H 0.050 0.950 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.709 -3.583 21.310 24.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.033 4.033 3 C -0.036 4.036 4 C -0.025 4.025 5 Cl -0.030 7.030 6 C -0.123 4.123 7 C -0.065 4.065 8 C -0.166 4.166 9 C 0.050 3.950 10 N -0.258 5.258 11 C -0.054 4.054 12 C -0.154 4.154 13 C -0.159 4.159 14 C -0.001 4.001 15 H 0.028 0.972 16 C -0.553 4.553 17 H 0.060 0.940 18 C -0.178 4.178 19 N -0.587 5.587 20 Si 0.772 3.228 21 H -0.186 1.186 22 H -0.230 1.230 23 H -0.186 1.186 24 C -0.027 4.027 25 H 0.194 0.806 26 H 0.199 0.801 27 H 0.167 0.833 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.311 -3.694 21.280 23.142 hybrid contribution -0.118 0.504 -0.845 0.991 sum 8.193 -3.191 20.434 22.246 Atomic orbital electron populations 1.81139 1.13316 1.09288 1.09468 1.25554 0.92792 0.92514 0.92485 1.16003 0.83850 1.01079 1.02712 1.20984 0.93547 0.93183 0.94736 1.98404 1.77542 1.61016 1.66045 1.21418 0.89740 1.00580 1.00530 1.21662 1.02497 0.91060 0.91300 1.22042 0.92705 1.01189 1.00659 1.18774 0.91317 0.92491 0.92449 1.59195 1.58441 1.04800 1.03346 1.22147 0.99041 0.84615 0.99609 1.21648 0.99658 0.99788 0.94274 1.21917 1.00937 0.97493 0.95507 1.19076 0.95341 0.92870 0.92810 0.97241 1.21257 1.20213 1.23095 0.90705 0.94021 1.25712 0.98748 0.98710 0.94634 1.70020 1.43930 1.43906 1.00807 0.85918 0.79304 0.80303 0.77277 1.18570 1.23038 1.18576 1.21854 0.97996 0.99080 0.83774 0.80583 0.80069 0.83309 0.89358 0.91931 0.93304 0.88988 0.95019 0.91604 0.92559 0.93181 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -17.13 18.54 19.01 0.35 -16.78 16 2 C 0.28 9.20 13.87 88.33 1.23 10.43 16 3 C -0.03 -0.80 5.76 -21.12 -0.12 -0.92 16 4 C 0.01 0.10 6.35 22.60 0.14 0.24 16 5 Cl -0.06 -1.18 28.03 -2.72 -0.08 -1.26 16 6 C -0.10 -1.23 9.81 22.27 0.22 -1.01 16 7 C -0.05 -0.48 10.02 22.29 0.22 -0.26 16 8 C -0.15 -2.51 8.67 22.37 0.19 -2.32 16 9 C 0.15 3.67 4.67 38.67 0.18 3.85 16 10 N -0.54 -16.73 3.99 -694.59 -2.77 -19.50 16 11 C 0.07 1.87 5.16 86.33 0.45 2.31 16 12 C -0.12 -3.59 6.09 30.65 0.19 -3.40 16 13 C -0.12 -4.80 4.73 30.68 0.15 -4.66 16 14 C 0.02 0.84 1.85 -11.49 -0.02 0.82 16 15 H 0.01 0.48 7.21 -2.39 -0.02 0.46 16 16 C -0.51 -28.73 9.15 25.60 0.23 -28.50 16 17 H 0.04 2.53 7.99 -2.91 -0.02 2.50 16 18 C 0.02 1.13 5.45 84.65 0.46 1.59 16 19 N -0.95 -58.84 13.96 21.45 0.30 -58.54 16 20 Si 0.94 46.08 24.35 68.60 1.67 47.75 16 21 H -0.26 -11.80 6.89 99.48 0.69 -11.11 16 22 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 23 H -0.26 -12.49 6.53 99.48 0.65 -11.84 16 24 C 0.10 3.68 4.34 86.33 0.37 4.06 16 25 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16 26 H 0.18 0.49 8.06 -2.91 -0.02 0.46 16 27 H 0.15 2.31 7.11 -2.91 -0.02 2.29 16 28 H 0.09 2.00 8.10 -2.39 -0.02 1.98 16 29 H 0.06 1.39 7.52 -2.39 -0.02 1.37 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.03 1.36 3.34 -2.39 -0.01 1.35 16 33 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.27 15.55 8.31 -92.71 -0.77 14.77 16 35 H 0.05 1.73 7.34 -2.39 -0.02 1.71 16 36 H 0.05 2.15 8.10 -2.39 -0.02 2.13 16 Total: -1.00 -71.22 310.88 4.38 -66.84 By element: Atomic # 1 Polarization: -1.77 SS G_CDS: 1.02 Total: -0.75 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 3.89 Total: -17.76 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -2.12 Total: -94.82 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.67 Total: 47.75 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Total: -71.22 4.38 -66.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596322177.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.234 kcal (2) G-P(sol) polarization free energy of solvation -71.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.85 seconds