Wall clock time and date at job start Tue Mar 31 2020 06:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39851 * 120.07942 * 207.92209 * 3 2 1 5 5 C 1.37611 * 119.92900 * 179.74463 * 4 3 2 6 6 C 1.39226 * 120.11386 * 0.48942 * 5 4 3 7 7 N 1.39182 * 119.91365 * 179.76449 * 6 5 4 8 8 C 1.46850 * 111.00031 * 235.76904 * 7 6 5 9 9 C 1.53033 * 109.52626 * 174.16117 * 8 7 6 10 10 C 1.53122 * 109.27554 * 59.17939 * 9 8 7 11 11 C 1.53119 * 109.16403 * 302.34700 * 10 9 8 12 12 H 1.09002 * 109.49978 * 297.67740 * 11 10 9 13 13 C 1.50698 * 109.50336 * 177.59869 * 11 10 9 14 14 H 1.07998 * 119.99514 * 245.42997 * 13 11 10 15 15 C 1.37872 * 120.00285 * 65.43811 * 13 11 10 16 16 N 1.31517 * 120.00001 * 9.55936 * 15 13 11 17 17 Si 1.86802 * 120.00006 * 189.56580 * 15 13 11 18 18 H 1.48497 * 109.47064 * 94.98670 * 17 15 13 19 19 H 1.48502 * 109.47090 * 214.98667 * 17 15 13 20 20 H 1.48501 * 109.46965 * 334.98701 * 17 15 13 21 21 C 1.46843 * 110.99980 * 111.56246 * 7 6 5 22 22 C 1.39100 * 120.17003 * 359.48969 * 6 5 4 23 23 C 1.37831 * 120.06354 * 0.27096 * 22 6 5 24 24 Cl 1.73597 * 120.05502 * 179.97438 * 23 22 6 25 25 H 1.07999 * 120.03417 * 359.96001 * 4 3 2 26 26 H 1.08001 * 119.93892 * 180.25393 * 5 4 3 27 27 H 1.09003 * 109.45932 * 54.14152 * 8 7 6 28 28 H 1.08998 * 109.46260 * 294.17999 * 8 7 6 29 29 H 1.09002 * 109.50677 * 179.12064 * 9 8 7 30 30 H 1.08999 * 109.50018 * 299.24371 * 9 8 7 31 31 H 1.08998 * 109.52119 * 62.25442 * 10 9 8 32 32 H 1.09008 * 109.52164 * 182.44100 * 10 9 8 33 33 H 0.97001 * 119.99778 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.46403 * 65.82094 * 21 7 6 35 35 H 1.08997 * 109.45693 * 305.84885 * 21 7 6 36 36 H 1.08000 * 119.96716 * 180.25591 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 1.0702 0.5667 5 6 4.6446 1.0652 0.5697 6 6 5.3404 0.0021 0.0006 7 7 6.7323 0.0036 0.0015 8 6 7.2596 -0.1407 -1.3614 9 6 8.7823 0.0107 -1.3393 10 6 9.3835 -1.0591 -0.4235 11 6 8.7817 -0.9174 0.9774 12 1 9.0442 0.0571 1.3893 13 6 9.3239 -2.0037 1.8701 14 1 8.6619 -2.7626 2.2602 15 6 10.6651 -2.0286 2.1889 16 7 11.4348 -1.0097 1.8744 17 14 11.3889 -3.5097 3.0675 18 1 11.9717 -4.4415 2.0689 19 1 12.4503 -3.0600 4.0036 20 1 10.3198 -4.2050 3.8284 21 6 7.2590 -1.0418 0.8881 22 6 4.6483 -1.0643 -0.5639 23 6 3.2700 -1.0690 -0.5665 24 17 2.4064 -2.3996 -1.2717 25 1 2.7300 1.8977 1.0046 26 1 5.1857 1.8892 1.0109 27 1 6.8273 0.6285 -2.0014 28 1 6.9981 -1.1250 -1.7497 29 1 9.1749 -0.1119 -2.3488 30 1 9.0442 1.0000 -0.9640 31 1 9.1547 -2.0483 -0.8199 32 1 10.4643 -0.9278 -0.3706 33 1 12.3784 -1.0274 2.0984 34 1 6.9975 -2.0220 0.4892 35 1 6.8264 -0.9270 1.8819 36 1 5.1914 -1.8892 -1.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596329970.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:07 Heat of formation + Delta-G solvation = 45.223722 kcal Electronic energy + Delta-G solvation = -20062.391738 eV Core-core repulsion = 16957.958462 eV Total energy + Delta-G solvation = -3104.433275 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 2.97 seconds Orbital eigenvalues (eV) -40.29867 -38.17823 -36.70756 -36.39190 -33.94669 -32.17282 -31.12840 -30.09001 -29.48081 -25.05088 -24.58960 -23.00886 -22.01332 -21.48179 -19.29479 -18.76915 -17.23484 -16.13203 -15.99063 -15.07952 -14.77456 -14.53986 -14.40332 -14.15720 -13.94293 -13.48703 -13.13998 -12.98599 -12.76178 -12.61675 -12.57767 -12.24693 -11.89036 -11.70489 -11.51047 -11.21443 -11.02126 -10.87459 -10.79887 -10.29128 -10.05354 -9.64612 -9.28844 -9.12224 -8.93859 -8.72244 -8.39864 -8.14007 -6.08497 -4.10629 0.42975 0.97105 1.78090 2.47281 2.71922 3.26761 3.34892 3.37234 3.54758 3.63220 4.02221 4.41143 4.50932 4.97692 5.01075 5.20404 5.24639 5.34201 5.50951 5.55969 5.68257 5.83198 5.92817 5.99946 6.09348 6.28498 6.30323 6.37464 6.52849 6.55181 6.76767 6.99599 7.18631 7.27746 7.30960 7.63767 7.66442 7.89598 7.98516 8.35223 8.93219 9.53260 11.00519 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.023262 B = 0.003803 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.372530 B = 7360.210907 C = 7627.047384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.259 3.741 3 C -0.042 4.042 4 C -0.051 4.051 5 C -0.098 4.098 6 C 0.157 3.843 7 N -0.509 5.509 8 C 0.064 3.936 9 C -0.117 4.117 10 C -0.108 4.108 11 C 0.054 3.946 12 H 0.045 0.955 13 C -0.520 4.520 14 H 0.055 0.945 15 C 0.068 3.932 16 N -0.884 5.884 17 Si 0.886 3.114 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.071 3.929 22 C -0.147 4.147 23 C 0.019 3.981 24 Cl -0.060 7.060 25 H 0.143 0.857 26 H 0.149 0.851 27 H 0.065 0.935 28 H 0.033 0.967 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.261 0.739 34 H 0.029 0.971 35 H 0.067 0.933 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.756 3.343 -6.078 13.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.057 4.057 3 C -0.046 4.046 4 C -0.072 4.072 5 C -0.117 4.117 6 C 0.061 3.939 7 N -0.231 5.231 8 C -0.062 4.062 9 C -0.155 4.155 10 C -0.146 4.146 11 C 0.035 3.965 12 H 0.063 0.937 13 C -0.559 4.559 14 H 0.073 0.927 15 C -0.135 4.135 16 N -0.522 5.522 17 Si 0.714 3.286 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.053 4.053 22 C -0.168 4.168 23 C -0.011 4.011 24 Cl -0.031 7.031 25 H 0.161 0.839 26 H 0.166 0.834 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.085 0.915 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.215 3.727 -5.942 14.961 hybrid contribution 0.630 -1.812 0.052 1.919 sum -12.585 1.916 -5.890 14.027 Atomic orbital electron populations 1.81215 1.11815 1.07399 1.08416 1.25437 0.92416 0.93935 0.93884 1.15827 0.84562 0.97154 1.07100 1.21095 0.94035 0.96056 0.96040 1.21205 0.92594 0.98773 0.99155 1.19280 0.90753 0.91476 0.92387 1.59773 1.01389 1.50743 1.11176 1.22156 0.97210 0.99323 0.87483 1.21677 0.92622 1.01727 0.99505 1.21640 1.02097 0.94872 0.96015 1.18699 0.86437 0.98646 0.92682 0.93735 1.21063 0.93536 1.11290 1.29981 0.92710 1.24905 0.97331 0.95680 0.95552 1.69968 1.05937 1.28853 1.47456 0.86670 0.79034 0.83342 0.79517 1.20730 1.21271 1.19875 1.22502 0.99701 0.89015 0.94081 1.21749 0.91697 1.00673 1.02726 1.20799 0.92215 0.89470 0.98638 1.98400 1.76747 1.45698 1.82240 0.83879 0.83352 0.91681 0.94850 0.92939 0.91591 0.94660 0.90610 0.92963 0.95315 0.91488 0.84004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.73 18.54 41.84 0.78 -4.96 16 2 C 0.26 3.14 14.38 -22.47 -0.32 2.82 16 3 C -0.04 -0.46 5.75 -106.74 -0.61 -1.07 16 4 C -0.05 -0.47 9.75 -39.21 -0.38 -0.86 16 5 C -0.10 -1.05 9.95 -39.44 -0.39 -1.44 16 6 C 0.16 2.04 4.68 -83.84 -0.39 1.65 16 7 N -0.51 -7.92 4.60 -171.15 -0.79 -8.71 16 8 C 0.06 0.95 5.05 -3.83 -0.02 0.93 16 9 C -0.12 -1.97 6.09 -26.65 -0.16 -2.14 16 10 C -0.11 -2.27 5.09 -26.61 -0.14 -2.41 16 11 C 0.05 1.23 2.13 -91.69 -0.20 1.03 16 12 H 0.04 1.14 8.09 -51.93 -0.42 0.72 16 13 C -0.52 -13.33 8.48 -34.44 -0.29 -13.62 16 14 H 0.05 1.40 7.77 -52.49 -0.41 0.99 16 15 C 0.07 1.78 5.22 -17.82 -0.09 1.69 16 16 N -0.88 -24.15 12.18 55.43 0.68 -23.47 16 17 Si 0.89 20.37 29.55 -169.99 -5.02 15.35 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 21 C 0.07 1.33 4.43 -3.84 -0.02 1.31 16 22 C -0.15 -1.81 8.48 -39.41 -0.33 -2.14 16 23 C 0.02 0.22 6.34 -39.10 -0.25 -0.03 16 24 Cl -0.06 -0.70 28.02 -51.86 -1.45 -2.16 16 25 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 26 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 27 H 0.06 0.84 8.11 -51.93 -0.42 0.42 16 28 H 0.03 0.48 7.12 -51.93 -0.37 0.11 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.81 6.98 -51.92 -0.36 1.45 16 33 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.03 0.53 7.76 -51.93 -0.40 0.13 16 35 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 36 H 0.14 1.75 7.09 -52.49 -0.37 1.38 16 LS Contribution 319.89 15.07 4.82 4.82 Total: -1.00 -27.01 319.89 -9.02 -36.03 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -4.43 Total: -2.62 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -3.60 Total: -14.29 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.66 Total: -37.14 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.45 Total: -2.16 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.01 -9.02 -36.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596329970.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.251 kcal (2) G-P(sol) polarization free energy of solvation -27.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.97 seconds