Wall clock time and date at job start Tue Mar 31 2020 06:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39851 * 120.07942 * 207.92209 * 3 2 1 5 5 C 1.37611 * 119.92900 * 179.74463 * 4 3 2 6 6 C 1.39226 * 120.11386 * 0.48942 * 5 4 3 7 7 N 1.39182 * 119.91365 * 179.76449 * 6 5 4 8 8 C 1.46850 * 111.00031 * 235.76904 * 7 6 5 9 9 C 1.53033 * 109.52626 * 174.16117 * 8 7 6 10 10 C 1.53122 * 109.27554 * 59.17939 * 9 8 7 11 11 C 1.53119 * 109.16403 * 302.34700 * 10 9 8 12 12 H 1.09002 * 109.49978 * 297.67740 * 11 10 9 13 13 C 1.50698 * 109.50336 * 177.59869 * 11 10 9 14 14 H 1.07998 * 119.99514 * 245.42997 * 13 11 10 15 15 C 1.37872 * 120.00285 * 65.43811 * 13 11 10 16 16 N 1.31517 * 120.00001 * 9.55936 * 15 13 11 17 17 Si 1.86802 * 120.00006 * 189.56580 * 15 13 11 18 18 H 1.48497 * 109.47064 * 94.98670 * 17 15 13 19 19 H 1.48502 * 109.47090 * 214.98667 * 17 15 13 20 20 H 1.48501 * 109.46965 * 334.98701 * 17 15 13 21 21 C 1.46843 * 110.99980 * 111.56246 * 7 6 5 22 22 C 1.39100 * 120.17003 * 359.48969 * 6 5 4 23 23 C 1.37831 * 120.06354 * 0.27096 * 22 6 5 24 24 Cl 1.73597 * 120.05502 * 179.97438 * 23 22 6 25 25 H 1.07999 * 120.03417 * 359.96001 * 4 3 2 26 26 H 1.08001 * 119.93892 * 180.25393 * 5 4 3 27 27 H 1.09003 * 109.45932 * 54.14152 * 8 7 6 28 28 H 1.08998 * 109.46260 * 294.17999 * 8 7 6 29 29 H 1.09002 * 109.50677 * 179.12064 * 9 8 7 30 30 H 1.08999 * 109.50018 * 299.24371 * 9 8 7 31 31 H 1.08998 * 109.52119 * 62.25442 * 10 9 8 32 32 H 1.09008 * 109.52164 * 182.44100 * 10 9 8 33 33 H 0.97001 * 119.99778 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.46403 * 65.82094 * 21 7 6 35 35 H 1.08997 * 109.45693 * 305.84885 * 21 7 6 36 36 H 1.08000 * 119.96716 * 180.25591 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 1.0702 0.5667 5 6 4.6446 1.0652 0.5697 6 6 5.3404 0.0021 0.0006 7 7 6.7323 0.0036 0.0015 8 6 7.2596 -0.1407 -1.3614 9 6 8.7823 0.0107 -1.3393 10 6 9.3835 -1.0591 -0.4235 11 6 8.7817 -0.9174 0.9774 12 1 9.0442 0.0571 1.3893 13 6 9.3239 -2.0037 1.8701 14 1 8.6619 -2.7626 2.2602 15 6 10.6651 -2.0286 2.1889 16 7 11.4348 -1.0097 1.8744 17 14 11.3889 -3.5097 3.0675 18 1 11.9717 -4.4415 2.0689 19 1 12.4503 -3.0600 4.0036 20 1 10.3198 -4.2050 3.8284 21 6 7.2590 -1.0418 0.8881 22 6 4.6483 -1.0643 -0.5639 23 6 3.2700 -1.0690 -0.5665 24 17 2.4064 -2.3996 -1.2717 25 1 2.7300 1.8977 1.0046 26 1 5.1857 1.8892 1.0109 27 1 6.8273 0.6285 -2.0014 28 1 6.9981 -1.1250 -1.7497 29 1 9.1749 -0.1119 -2.3488 30 1 9.0442 1.0000 -0.9640 31 1 9.1547 -2.0483 -0.8199 32 1 10.4643 -0.9278 -0.3706 33 1 12.3784 -1.0274 2.0984 34 1 6.9975 -2.0220 0.4892 35 1 6.8264 -0.9270 1.8819 36 1 5.1914 -1.8892 -1.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596329970.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:05 Heat of formation + Delta-G solvation = 32.154942 kcal Electronic energy + Delta-G solvation = -20062.958442 eV Core-core repulsion = 16957.958462 eV Total energy + Delta-G solvation = -3104.999980 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.34410 -39.36166 -37.63561 -37.47838 -35.51885 -33.74555 -32.01034 -31.68130 -30.63159 -26.88947 -25.79997 -23.92548 -23.30180 -22.94434 -20.42645 -20.07105 -18.71759 -17.60980 -17.08628 -16.55379 -15.95493 -15.80460 -15.52518 -15.30688 -14.98639 -14.76868 -14.39357 -14.29101 -14.21260 -13.86245 -13.77600 -13.53283 -13.14911 -12.83134 -12.73689 -12.62872 -12.54007 -12.37982 -12.12625 -11.90396 -11.71204 -11.36981 -10.87080 -10.68684 -10.37872 -10.01944 -9.75998 -9.38918 -8.09496 -6.17087 -0.49666 0.11440 0.87984 1.42847 1.45653 1.51779 1.54147 1.77561 2.44976 2.64129 2.68845 2.91670 3.21871 3.67217 4.01769 4.14494 4.18484 4.24135 4.33894 4.45467 4.58959 4.64867 4.71861 4.79612 4.89616 4.97552 5.05596 5.07365 5.18733 5.35199 5.42863 5.49404 5.55607 5.68863 5.89916 6.09304 6.11176 6.32963 6.44462 6.47784 6.95825 7.49674 8.98908 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.023262 B = 0.003803 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.372530 B = 7360.210907 C = 7627.047384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.276 3.724 3 C -0.041 4.041 4 C -0.030 4.030 5 C -0.091 4.091 6 C 0.138 3.862 7 N -0.512 5.512 8 C 0.067 3.933 9 C -0.110 4.110 10 C -0.102 4.102 11 C 0.053 3.947 12 H 0.008 0.992 13 C -0.535 4.535 14 H 0.052 0.948 15 C 0.020 3.980 16 N -0.914 5.914 17 Si 0.944 3.056 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.268 1.268 21 C 0.087 3.913 22 C -0.147 4.147 23 C 0.015 3.985 24 Cl -0.063 7.063 25 H 0.177 0.823 26 H 0.162 0.838 27 H 0.093 0.907 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.032 0.968 32 H 0.039 0.961 33 H 0.260 0.740 34 H 0.028 0.972 35 H 0.061 0.939 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.206 3.726 -6.457 15.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.039 4.039 3 C -0.045 4.045 4 C -0.051 4.051 5 C -0.110 4.110 6 C 0.042 3.958 7 N -0.233 5.233 8 C -0.059 4.059 9 C -0.148 4.148 10 C -0.140 4.140 11 C 0.034 3.966 12 H 0.026 0.974 13 C -0.574 4.574 14 H 0.070 0.930 15 C -0.179 4.179 16 N -0.553 5.553 17 Si 0.770 3.230 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.193 1.193 21 C -0.038 4.038 22 C -0.168 4.168 23 C -0.015 4.015 24 Cl -0.034 7.034 25 H 0.195 0.805 26 H 0.179 0.821 27 H 0.111 0.889 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.684 4.108 -6.328 16.509 hybrid contribution 1.045 -1.902 0.176 2.177 sum -13.639 2.207 -6.152 15.124 Atomic orbital electron populations 1.81244 1.12756 1.08424 1.09506 1.25507 0.92424 0.93004 0.92958 1.15926 0.83935 0.97467 1.07165 1.21382 0.93391 0.96022 0.94285 1.21351 0.93092 0.98347 0.98178 1.19301 0.89311 0.92883 0.94299 1.59616 1.03223 1.49328 1.11166 1.22167 0.95405 1.00753 0.87559 1.21576 0.94355 0.99364 0.99460 1.21454 0.99971 0.96303 0.96257 1.18593 0.89517 0.95665 0.92863 0.97395 1.21476 0.93805 1.11878 1.30199 0.93016 1.25607 0.97871 0.97881 0.96536 1.70084 1.06010 1.30430 1.48750 0.85762 0.78271 0.80437 0.78510 1.20377 1.21220 1.19280 1.22092 0.96806 0.90110 0.94824 1.21627 0.91863 1.00477 1.02808 1.20789 0.92043 0.89671 0.98961 1.98402 1.76697 1.45975 1.82335 0.80527 0.82075 0.88875 0.94158 0.90687 0.92558 0.94946 0.94235 0.93110 0.95390 0.92069 0.84346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -11.52 18.54 19.00 0.35 -11.17 16 2 C 0.28 6.05 14.38 88.33 1.27 7.32 16 3 C -0.04 -0.77 5.75 -21.24 -0.12 -0.89 16 4 C -0.03 -0.44 9.75 22.51 0.22 -0.22 16 5 C -0.09 -1.65 9.95 22.36 0.22 -1.42 16 6 C 0.14 3.25 4.68 38.42 0.18 3.43 16 7 N -0.51 -15.18 4.60 -695.40 -3.20 -18.38 16 8 C 0.07 1.84 5.05 86.32 0.44 2.27 16 9 C -0.11 -3.60 6.09 30.65 0.19 -3.41 16 10 C -0.10 -4.35 5.09 30.67 0.16 -4.20 16 11 C 0.05 2.44 2.13 -11.49 -0.02 2.41 16 12 H 0.01 0.42 8.09 -2.39 -0.02 0.40 16 13 C -0.53 -28.00 8.48 25.60 0.22 -27.78 16 14 H 0.05 2.67 7.77 -2.91 -0.02 2.64 16 15 C 0.02 1.10 5.22 84.65 0.44 1.54 16 16 N -0.91 -51.37 12.18 21.45 0.26 -51.11 16 17 Si 0.94 42.27 29.55 68.60 2.03 44.29 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 21 C 0.09 3.22 4.43 86.33 0.38 3.61 16 22 C -0.15 -3.30 8.48 22.38 0.19 -3.11 16 23 C 0.02 0.33 6.34 22.58 0.14 0.47 16 24 Cl -0.06 -1.38 28.02 -2.72 -0.08 -1.46 16 25 H 0.18 1.47 8.06 -2.91 -0.02 1.44 16 26 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 27 H 0.09 2.09 8.11 -2.39 -0.02 2.07 16 28 H 0.04 1.07 7.12 -2.39 -0.02 1.05 16 29 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.04 1.95 6.98 -2.38 -0.02 1.94 16 33 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 34 H 0.03 1.03 7.76 -2.39 -0.02 1.01 16 35 H 0.06 2.30 8.10 -2.39 -0.02 2.28 16 36 H 0.14 3.19 7.09 -2.91 -0.02 3.17 16 Total: -1.00 -59.53 319.89 4.35 -55.17 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: 1.09 Total: 2.64 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 3.90 Total: -19.98 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -2.59 Total: -80.66 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.46 kcal Total: -59.53 4.35 -55.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596329970.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.329 kcal (2) G-P(sol) polarization free energy of solvation -59.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds