Wall clock time and date at job start Tue Mar 31 2020 06:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39843 * 120.08493 * 178.18105 * 3 2 1 5 5 C 1.37603 * 119.93318 * 179.74027 * 4 3 2 6 6 C 1.39230 * 120.10972 * 0.49320 * 5 4 3 7 7 N 1.39193 * 119.91097 * 179.76094 * 6 5 4 8 8 C 1.46842 * 110.99764 * 235.76830 * 7 6 5 9 9 C 1.53036 * 109.52190 * 185.84248 * 8 7 6 10 10 C 1.53123 * 109.27788 * 300.81892 * 9 8 7 11 11 C 1.53123 * 109.16001 * 57.65365 * 10 9 8 12 12 H 1.08997 * 109.49749 * 62.28489 * 11 10 9 13 13 C 1.50696 * 109.53358 * 182.38505 * 11 10 9 14 14 H 1.08004 * 119.99958 * 119.82538 * 13 11 10 15 15 C 1.37874 * 120.00423 * 299.82217 * 13 11 10 16 16 N 1.31517 * 119.99829 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 120.00281 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46941 * 90.00271 * 17 15 13 19 19 H 1.48497 * 109.47123 * 209.99976 * 17 15 13 20 20 H 1.48498 * 109.46955 * 330.00037 * 17 15 13 21 21 C 1.46848 * 111.00042 * 359.97438 * 7 6 5 22 22 C 1.39089 * 120.17452 * 359.48053 * 6 5 4 23 23 C 1.37835 * 120.06154 * 0.28246 * 22 6 5 24 24 Cl 1.73606 * 120.05525 * 179.97438 * 23 22 6 25 25 H 1.08005 * 120.02902 * 359.95704 * 4 3 2 26 26 H 1.08000 * 119.93914 * 180.25195 * 5 4 3 27 27 H 1.09002 * 109.46766 * 65.82581 * 8 7 6 28 28 H 1.09000 * 109.45508 * 305.84760 * 8 7 6 29 29 H 1.09000 * 109.50632 * 60.76184 * 9 8 7 30 30 H 1.09006 * 109.50216 * 180.87978 * 9 8 7 31 31 H 1.09000 * 109.52561 * 177.56017 * 10 9 8 32 32 H 1.09007 * 109.52268 * 297.75177 * 10 9 8 33 33 H 0.97005 * 120.00074 * 179.97438 * 16 15 13 34 34 H 1.09003 * 109.46014 * 294.17809 * 21 7 6 35 35 H 1.08995 * 109.46374 * 54.13840 * 21 7 6 36 36 H 1.08000 * 119.97199 * 180.25547 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 1.2104 -0.0384 5 6 4.6445 1.2075 -0.0329 6 6 5.3404 0.0021 0.0005 7 7 6.7323 0.0039 0.0009 8 6 7.2599 -0.7975 -1.1107 9 6 8.7828 -0.8931 -0.9945 10 6 9.3817 0.5157 -1.0272 11 6 8.7796 1.3443 0.1111 12 1 9.0431 0.8936 1.0679 13 6 9.3194 2.7500 0.0513 14 1 8.6441 3.5827 -0.0794 15 6 10.6753 2.9732 0.1634 16 7 11.4978 1.9592 0.3220 17 14 11.3444 4.7157 0.0899 18 1 11.3888 5.2870 1.4599 19 1 12.7143 4.6963 -0.4829 20 1 10.4619 5.5491 -0.7656 21 6 7.2568 1.3750 -0.0372 22 6 4.6483 -1.2038 0.0393 23 6 3.2699 -1.2092 0.0390 24 17 2.4063 -2.7144 0.0867 25 1 2.7299 2.1461 -0.0688 26 1 5.1856 2.1419 -0.0584 27 1 6.9968 -0.3241 -2.0567 28 1 6.8293 -1.7982 -1.0732 29 1 9.0464 -1.3789 -0.0551 30 1 9.1756 -1.4749 -1.8285 31 1 10.4627 0.4551 -0.9012 32 1 9.1513 0.9875 -1.9825 33 1 12.4518 2.1162 0.4005 34 1 6.9936 1.8381 -0.9882 35 1 6.8239 1.9523 0.7797 36 1 5.1914 -2.1368 0.0693 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596329971.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:23 Heat of formation + Delta-G solvation = 46.580558 kcal Electronic energy + Delta-G solvation = -20052.851852 eV Core-core repulsion = 16948.477414 eV Total energy + Delta-G solvation = -3104.374438 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 4.67 seconds Orbital eigenvalues (eV) -40.39905 -38.20294 -36.65271 -36.29598 -34.03306 -32.23861 -31.42857 -29.96406 -29.37744 -25.32163 -24.61231 -23.18795 -21.90965 -21.20487 -19.29743 -18.78128 -17.33028 -16.05857 -16.04858 -15.28123 -14.61060 -14.59771 -14.22184 -14.08752 -13.92648 -13.63678 -13.25001 -12.95453 -12.76984 -12.72710 -12.55992 -12.28012 -11.95845 -11.51221 -11.46663 -11.19644 -11.06340 -10.82624 -10.78970 -10.33544 -10.04858 -9.85130 -9.57548 -9.29603 -9.02217 -8.87511 -8.43145 -7.76397 -6.10995 -4.18200 0.59741 1.06249 1.81557 2.59362 2.80851 3.23550 3.31223 3.32860 3.62027 3.76985 4.01971 4.36183 4.57499 5.02461 5.08045 5.15511 5.19914 5.37767 5.45314 5.50642 5.74797 5.79057 5.85664 6.02254 6.04855 6.15792 6.21080 6.37015 6.42603 6.49701 6.69275 6.95287 7.15382 7.24834 7.40506 7.46620 7.61208 7.86450 7.98488 8.28195 8.84958 9.47455 10.95145 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.028386 B = 0.003682 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.180390 B = 7602.505352 C = 8433.882157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.263 3.737 3 C -0.075 4.075 4 C -0.025 4.025 5 C -0.176 4.176 6 C 0.178 3.822 7 N -0.485 5.485 8 C 0.065 3.935 9 C -0.122 4.122 10 C -0.115 4.115 11 C 0.054 3.946 12 H 0.037 0.963 13 C -0.519 4.519 14 H 0.056 0.944 15 C 0.065 3.935 16 N -0.887 5.887 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.057 3.943 22 C -0.148 4.148 23 C 0.037 3.963 24 Cl -0.060 7.060 25 H 0.140 0.860 26 H 0.149 0.851 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.034 0.966 33 H 0.261 0.739 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.776 -5.886 -2.390 12.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.052 4.052 3 C -0.081 4.081 4 C -0.047 4.047 5 C -0.198 4.198 6 C 0.074 3.926 7 N -0.196 5.196 8 C -0.059 4.059 9 C -0.159 4.159 10 C -0.153 4.153 11 C 0.035 3.965 12 H 0.055 0.945 13 C -0.558 4.558 14 H 0.074 0.926 15 C -0.137 4.137 16 N -0.525 5.525 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.068 4.068 22 C -0.169 4.169 23 C 0.007 3.993 24 Cl -0.031 7.031 25 H 0.157 0.843 26 H 0.167 0.833 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.113 -6.288 -1.954 13.787 hybrid contribution 0.612 1.078 -0.516 1.343 sum -11.500 -5.211 -2.470 12.865 Atomic orbital electron populations 1.81203 1.11887 1.07168 1.09680 1.25448 0.92409 0.93805 0.93496 1.15670 0.84494 0.93167 1.14754 1.20974 0.93797 0.95895 0.94001 1.21526 0.93800 0.98946 1.05495 1.19310 0.89911 0.92511 0.90854 1.58702 1.02207 1.16980 1.41688 1.22265 0.97548 0.96281 0.89849 1.21761 0.92236 1.00626 1.01325 1.21722 1.03775 0.91228 0.98537 1.18714 0.86248 0.95816 0.95723 0.94505 1.21056 0.92202 0.91871 1.50649 0.92601 1.24921 0.97038 0.96891 0.94824 1.69874 1.03316 1.29939 1.49347 0.86599 0.78319 0.84827 0.78287 1.20630 1.21226 1.19917 1.22697 1.00164 0.83877 1.00087 1.20563 0.90943 0.98719 1.06718 1.20641 0.92043 0.85762 1.00868 1.98392 1.76701 1.31491 1.96516 0.84266 0.83304 0.93796 0.91088 0.91683 0.92570 0.88676 0.94684 0.92873 0.94011 0.90841 0.83754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.13 18.54 41.84 0.78 -5.36 16 2 C 0.26 3.36 14.38 -22.47 -0.32 3.04 16 3 C -0.08 -0.87 5.75 -106.74 -0.61 -1.48 16 4 C -0.03 -0.26 9.75 -39.21 -0.38 -0.65 16 5 C -0.18 -2.10 8.79 -39.44 -0.35 -2.44 16 6 C 0.18 2.35 5.64 -83.83 -0.47 1.87 16 7 N -0.49 -7.50 4.69 -171.15 -0.80 -8.30 16 8 C 0.06 0.93 5.25 -3.84 -0.02 0.91 16 9 C -0.12 -2.01 6.09 -26.65 -0.16 -2.17 16 10 C -0.11 -2.38 5.03 -26.60 -0.13 -2.52 16 11 C 0.05 1.19 2.26 -91.69 -0.21 0.98 16 12 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 13 C -0.52 -12.91 8.56 -34.44 -0.29 -13.20 16 14 H 0.06 1.36 7.74 -52.48 -0.41 0.95 16 15 C 0.07 1.67 5.31 -17.82 -0.09 1.58 16 16 N -0.89 -23.63 11.36 55.43 0.63 -23.00 16 17 Si 0.89 19.94 29.54 -169.99 -5.02 14.91 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 C 0.06 1.01 3.36 -3.83 -0.01 0.99 16 22 C -0.15 -1.75 8.91 -39.41 -0.35 -2.11 16 23 C 0.04 0.43 6.34 -39.10 -0.25 0.18 16 24 Cl -0.06 -0.68 28.02 -51.86 -1.45 -2.13 16 25 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 26 H 0.15 1.74 5.77 -52.49 -0.30 1.44 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.86 6.69 -51.93 -0.35 0.51 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 2.28 6.16 -51.93 -0.32 1.96 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.04 0.72 7.72 -51.93 -0.40 0.32 16 35 H 0.07 1.27 6.96 -51.93 -0.36 0.91 16 36 H 0.14 1.57 7.15 -52.49 -0.38 1.20 16 LS Contribution 314.15 15.07 4.73 4.73 Total: -1.00 -26.25 314.15 -8.99 -35.24 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -4.19 Total: -1.09 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -3.66 Total: -15.01 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.60 Total: -36.66 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.45 Total: -2.13 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.25 -8.99 -35.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596329971.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.819 kcal (2) G-P(sol) polarization free energy of solvation -26.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.68 seconds