Wall clock time and date at job start Tue Mar 31 2020 06:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39843 * 120.08493 * 178.18105 * 3 2 1 5 5 C 1.37603 * 119.93318 * 179.74027 * 4 3 2 6 6 C 1.39230 * 120.10972 * 0.49320 * 5 4 3 7 7 N 1.39193 * 119.91097 * 179.76094 * 6 5 4 8 8 C 1.46842 * 110.99764 * 235.76830 * 7 6 5 9 9 C 1.53036 * 109.52190 * 185.84248 * 8 7 6 10 10 C 1.53123 * 109.27788 * 300.81892 * 9 8 7 11 11 C 1.53123 * 109.16001 * 57.65365 * 10 9 8 12 12 H 1.08997 * 109.49749 * 62.28489 * 11 10 9 13 13 C 1.50696 * 109.53358 * 182.38505 * 11 10 9 14 14 H 1.08004 * 119.99958 * 119.82538 * 13 11 10 15 15 C 1.37874 * 120.00423 * 299.82217 * 13 11 10 16 16 N 1.31517 * 119.99829 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 120.00281 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46941 * 90.00271 * 17 15 13 19 19 H 1.48497 * 109.47123 * 209.99976 * 17 15 13 20 20 H 1.48498 * 109.46955 * 330.00037 * 17 15 13 21 21 C 1.46848 * 111.00042 * 359.97438 * 7 6 5 22 22 C 1.39089 * 120.17452 * 359.48053 * 6 5 4 23 23 C 1.37835 * 120.06154 * 0.28246 * 22 6 5 24 24 Cl 1.73606 * 120.05525 * 179.97438 * 23 22 6 25 25 H 1.08005 * 120.02902 * 359.95704 * 4 3 2 26 26 H 1.08000 * 119.93914 * 180.25195 * 5 4 3 27 27 H 1.09002 * 109.46766 * 65.82581 * 8 7 6 28 28 H 1.09000 * 109.45508 * 305.84760 * 8 7 6 29 29 H 1.09000 * 109.50632 * 60.76184 * 9 8 7 30 30 H 1.09006 * 109.50216 * 180.87978 * 9 8 7 31 31 H 1.09000 * 109.52561 * 177.56017 * 10 9 8 32 32 H 1.09007 * 109.52268 * 297.75177 * 10 9 8 33 33 H 0.97005 * 120.00074 * 179.97438 * 16 15 13 34 34 H 1.09003 * 109.46014 * 294.17809 * 21 7 6 35 35 H 1.08995 * 109.46374 * 54.13840 * 21 7 6 36 36 H 1.08000 * 119.97199 * 180.25547 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 1.2104 -0.0384 5 6 4.6445 1.2075 -0.0329 6 6 5.3404 0.0021 0.0005 7 7 6.7323 0.0039 0.0009 8 6 7.2599 -0.7975 -1.1107 9 6 8.7828 -0.8931 -0.9945 10 6 9.3817 0.5157 -1.0272 11 6 8.7796 1.3443 0.1111 12 1 9.0431 0.8936 1.0679 13 6 9.3194 2.7500 0.0513 14 1 8.6441 3.5827 -0.0794 15 6 10.6753 2.9732 0.1634 16 7 11.4978 1.9592 0.3220 17 14 11.3444 4.7157 0.0899 18 1 11.3888 5.2870 1.4599 19 1 12.7143 4.6963 -0.4829 20 1 10.4619 5.5491 -0.7656 21 6 7.2568 1.3750 -0.0372 22 6 4.6483 -1.2038 0.0393 23 6 3.2699 -1.2092 0.0390 24 17 2.4063 -2.7144 0.0867 25 1 2.7299 2.1461 -0.0688 26 1 5.1856 2.1419 -0.0584 27 1 6.9968 -0.3241 -2.0567 28 1 6.8293 -1.7982 -1.0732 29 1 9.0464 -1.3789 -0.0551 30 1 9.1756 -1.4749 -1.8285 31 1 10.4627 0.4551 -0.9012 32 1 9.1513 0.9875 -1.9825 33 1 12.4518 2.1162 0.4005 34 1 6.9936 1.8381 -0.9882 35 1 6.8239 1.9523 0.7797 36 1 5.1914 -2.1368 0.0693 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596329971.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:14 Heat of formation + Delta-G solvation = 34.185034 kcal Electronic energy + Delta-G solvation = -20053.389362 eV Core-core repulsion = 16948.477414 eV Total energy + Delta-G solvation = -3104.911949 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 9.53 seconds Orbital eigenvalues (eV) -41.47331 -39.35455 -37.58567 -37.42132 -35.57157 -33.74505 -32.53178 -31.36968 -30.49817 -27.03812 -25.83891 -24.37060 -23.10434 -22.49035 -20.57681 -19.96664 -18.75873 -17.65186 -17.09951 -16.55818 -16.11970 -15.71812 -15.32443 -15.12718 -15.06276 -14.77466 -14.66781 -14.33245 -14.19893 -13.82258 -13.74845 -13.54887 -13.09282 -12.84265 -12.78149 -12.55039 -12.48017 -12.22092 -12.08527 -11.82603 -11.73394 -11.39637 -10.98899 -10.81029 -10.50481 -10.33134 -9.92228 -8.85509 -8.05367 -6.18433 -0.36521 0.17289 0.90675 1.45205 1.47521 1.55618 1.58862 1.82193 2.44914 2.64214 2.77729 2.95691 3.23605 3.70925 3.99878 4.11048 4.18302 4.22384 4.28462 4.41995 4.55613 4.65567 4.74253 4.80501 4.88639 4.97562 5.02920 5.12799 5.13794 5.17710 5.42472 5.44619 5.58357 5.68438 5.92670 6.06862 6.21051 6.28785 6.41933 6.42853 6.94286 7.50087 8.99305 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.028386 B = 0.003682 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.180390 B = 7602.505352 C = 8433.882157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.280 3.720 3 C -0.075 4.075 4 C -0.011 4.011 5 C -0.178 4.178 6 C 0.164 3.836 7 N -0.496 5.496 8 C 0.067 3.933 9 C -0.114 4.114 10 C -0.109 4.109 11 C 0.050 3.950 12 H -0.002 1.002 13 C -0.532 4.532 14 H 0.058 0.942 15 C 0.016 3.984 16 N -0.915 5.915 17 Si 0.949 3.051 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.266 1.266 21 C 0.073 3.927 22 C -0.141 4.141 23 C 0.036 3.964 24 Cl -0.057 7.057 25 H 0.166 0.834 26 H 0.151 0.849 27 H 0.050 0.950 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.030 0.970 33 H 0.259 0.741 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.344 -5.817 -2.986 13.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.035 4.035 3 C -0.081 4.081 4 C -0.032 4.032 5 C -0.199 4.199 6 C 0.062 3.938 7 N -0.208 5.208 8 C -0.057 4.057 9 C -0.152 4.152 10 C -0.147 4.147 11 C 0.031 3.969 12 H 0.016 0.984 13 C -0.571 4.571 14 H 0.077 0.923 15 C -0.183 4.183 16 N -0.555 5.555 17 Si 0.776 3.224 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.190 1.190 21 C -0.053 4.053 22 C -0.162 4.162 23 C 0.006 3.994 24 Cl -0.028 7.028 25 H 0.184 0.816 26 H 0.168 0.832 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.710 -6.222 -2.551 15.271 hybrid contribution 1.058 1.032 -0.318 1.512 sum -12.652 -5.191 -2.869 13.973 Atomic orbital electron populations 1.81229 1.12817 1.08161 1.10800 1.25536 0.92440 0.92884 0.92593 1.15758 0.83857 0.93648 1.14790 1.21176 0.93199 0.96572 0.92231 1.21582 0.94357 0.98575 1.05390 1.19328 0.88731 0.93588 0.92168 1.58638 1.03779 1.15531 1.42804 1.22287 0.95634 0.97867 0.89895 1.21645 0.94116 0.97743 1.01671 1.21523 1.01663 0.93936 0.97604 1.18624 0.89647 0.94371 0.94212 0.98369 1.21502 0.92449 0.93438 1.49674 0.92329 1.25658 0.97602 1.00121 0.94941 1.70025 1.03267 1.31614 1.50556 0.85688 0.77553 0.80982 0.78210 1.20514 1.21430 1.19002 1.22323 0.96916 0.85684 1.00392 1.20578 0.90923 0.98668 1.06062 1.20659 0.92038 0.85949 1.00754 1.98400 1.76574 1.31326 1.96475 0.81617 0.83159 0.93151 0.88069 0.92814 0.90406 0.92391 0.95119 0.93197 0.93495 0.90658 0.82682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -12.36 18.54 19.00 0.35 -12.01 16 2 C 0.28 6.51 14.38 88.33 1.27 7.78 16 3 C -0.07 -1.52 5.75 -21.24 -0.12 -1.64 16 4 C -0.01 -0.19 9.75 22.51 0.22 0.03 16 5 C -0.18 -3.76 8.79 22.36 0.20 -3.56 16 6 C 0.16 3.94 5.64 38.42 0.22 4.15 16 7 N -0.50 -14.54 4.69 -695.40 -3.26 -17.79 16 8 C 0.07 1.78 5.25 86.33 0.45 2.24 16 9 C -0.11 -3.68 6.09 30.65 0.19 -3.49 16 10 C -0.11 -4.62 5.03 30.68 0.15 -4.47 16 11 C 0.05 2.27 2.26 -11.49 -0.03 2.24 16 12 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 13 C -0.53 -26.82 8.56 25.60 0.22 -26.60 16 14 H 0.06 2.84 7.74 -2.91 -0.02 2.82 16 15 C 0.02 0.82 5.31 84.65 0.45 1.27 16 16 N -0.92 -50.37 11.36 21.45 0.24 -50.12 16 17 Si 0.95 41.23 29.54 68.60 2.03 43.26 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 C 0.07 2.52 3.36 86.32 0.29 2.81 16 22 C -0.14 -2.95 8.91 22.38 0.20 -2.75 16 23 C 0.04 0.74 6.34 22.58 0.14 0.89 16 24 Cl -0.06 -1.16 28.02 -2.72 -0.08 -1.24 16 25 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 26 H 0.15 3.16 5.77 -2.91 -0.02 3.14 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.10 2.11 6.69 -2.39 -0.02 2.09 16 29 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.06 2.89 6.16 -2.39 -0.01 2.87 16 32 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.26 13.70 8.31 -92.70 -0.77 12.93 16 34 H 0.05 1.56 7.72 -2.39 -0.02 1.55 16 35 H 0.08 2.54 6.96 -2.39 -0.02 2.53 16 36 H 0.16 2.89 7.15 -2.91 -0.02 2.87 16 Total: -1.00 -57.49 314.15 4.24 -53.25 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 1.10 Total: 5.76 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 3.85 Total: -21.11 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -2.66 Total: -79.92 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -57.49 4.24 -53.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596329971.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.437 kcal (2) G-P(sol) polarization free energy of solvation -57.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.53 seconds