Wall clock time and date at job start Tue Mar 31 2020 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39760 * 120.19559 * 22.63223 * 3 2 1 5 5 C 1.37746 * 119.93182 * 180.24820 * 4 3 2 6 6 C 1.38710 * 120.33231 * 359.77060 * 5 4 3 7 7 Cl 1.73603 * 119.80363 * 179.97438 * 6 5 4 8 8 C 1.38152 * 120.39613 * 0.02562 * 6 5 4 9 9 C 1.38830 * 120.06009 * 359.95657 * 8 6 5 10 10 N 1.39028 * 120.16797 * 179.97438 * 9 8 6 11 11 C 1.46845 * 111.00420 * 295.79420 * 10 9 8 12 12 C 1.53034 * 109.52676 * 185.84025 * 11 10 9 13 13 C 1.53126 * 109.27454 * 300.81918 * 12 11 10 14 14 C 1.53119 * 109.16048 * 57.65518 * 13 12 11 15 15 H 1.09004 * 109.50364 * 62.32521 * 14 13 12 16 16 C 1.50705 * 109.50316 * 182.40389 * 14 13 12 17 17 H 1.07990 * 119.99883 * 119.99811 * 16 14 13 18 18 C 1.37878 * 119.99667 * 300.00057 * 16 14 13 19 19 N 1.31517 * 119.99544 * 179.97438 * 18 16 14 20 20 Si 1.86795 * 120.00340 * 359.97438 * 18 16 14 21 21 H 1.48501 * 109.47550 * 89.99860 * 20 18 16 22 22 H 1.48497 * 109.47188 * 210.00399 * 20 18 16 23 23 H 1.48505 * 109.47004 * 330.00168 * 20 18 16 24 24 C 1.46850 * 110.99891 * 60.00436 * 10 9 8 25 25 H 1.08002 * 120.03144 * 0.02562 * 4 3 2 26 26 H 1.08004 * 119.82726 * 179.74486 * 5 4 3 27 27 H 1.08001 * 119.97081 * 179.97438 * 8 6 5 28 28 H 1.08995 * 109.46315 * 65.81875 * 11 10 9 29 29 H 1.09005 * 109.45975 * 305.85389 * 11 10 9 30 30 H 1.08997 * 109.50792 * 180.88024 * 12 11 10 31 31 H 1.09006 * 109.50471 * 60.75677 * 12 11 10 32 32 H 1.08999 * 109.52028 * 177.55723 * 13 12 11 33 33 H 1.09000 * 109.52072 * 297.68377 * 13 12 11 34 34 H 0.96999 * 119.99553 * 179.97438 * 19 18 16 35 35 H 1.09005 * 109.46186 * 54.14099 * 24 10 9 36 36 H 1.08998 * 109.46012 * 294.17493 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2714 -1.1140 -0.4648 5 6 4.6488 -1.1095 -0.4576 6 6 5.3433 -0.0014 0.0047 7 17 7.0793 -0.0108 0.0083 8 6 4.6618 1.1094 0.4634 9 6 3.2736 1.1227 0.4631 10 7 2.5855 2.2391 0.9246 11 6 2.8385 2.4595 2.3542 12 6 1.9559 3.6030 2.8595 13 6 2.2704 4.8734 2.0646 14 6 2.0452 4.6026 0.5745 15 1 0.9973 4.3558 0.4038 16 6 2.4090 5.8300 -0.2206 17 1 3.1877 5.7785 -0.9671 18 6 1.7477 7.0186 0.0051 19 7 2.0656 8.0899 -0.6885 20 14 0.4004 7.1074 1.2959 21 1 0.9938 7.4758 2.6064 22 1 -0.5984 8.1321 0.8991 23 1 -0.2653 5.7847 1.4083 24 6 2.9251 3.4300 0.1355 25 1 2.7355 -1.9793 -0.8260 26 1 5.1907 -1.9734 -0.8134 27 1 5.2095 1.9683 0.8222 28 1 3.8871 2.7175 2.5019 29 1 2.6070 1.5498 2.9084 30 1 2.1553 3.7767 3.9169 31 1 0.9067 3.3398 2.7248 32 1 1.6137 5.6796 2.3916 33 1 3.3090 5.1594 2.2310 34 1 1.6001 8.9260 -0.5299 35 1 2.7566 3.2253 -0.9218 36 1 3.9734 3.6835 0.2935 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596330674.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:52 Heat of formation + Delta-G solvation = 36.523250 kcal Electronic energy + Delta-G solvation = -20496.147895 eV Core-core repulsion = 17391.337339 eV Total energy + Delta-G solvation = -3104.810556 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = -1.51 seconds Orbital eigenvalues (eV) -41.50169 -39.28544 -37.78048 -37.10864 -35.69930 -34.06120 -32.19954 -32.10318 -30.48893 -26.96571 -25.78151 -24.73950 -23.23827 -22.71371 -20.55129 -19.92275 -18.95686 -18.00925 -17.06366 -16.88446 -16.12058 -16.03005 -15.52738 -15.22514 -15.00012 -14.84259 -14.68131 -14.27519 -14.25694 -14.00631 -13.89282 -13.81211 -13.11667 -12.99736 -12.85774 -12.68680 -12.48401 -12.18713 -12.01416 -11.93411 -11.82469 -11.50490 -11.07715 -10.93136 -10.65650 -10.00626 -9.71782 -9.55254 -8.32698 -6.35781 -0.44245 0.11829 1.04997 1.26105 1.34250 1.43752 1.73698 1.85471 2.29744 2.67553 2.72510 2.94195 3.03452 3.75774 3.88508 4.01086 4.05869 4.13976 4.18007 4.33057 4.37130 4.53602 4.59939 4.67867 4.74728 4.82944 4.93437 4.96925 5.08140 5.09618 5.14545 5.20532 5.38130 5.51055 5.58963 5.66987 5.93520 6.26417 6.30189 6.56343 6.71085 7.30015 8.83897 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.018046 B = 0.004952 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.231476 B = 5653.223483 C = 6389.445246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.288 3.712 3 C -0.024 4.024 4 C -0.035 4.035 5 C -0.105 4.105 6 C 0.002 3.998 7 Cl -0.059 7.059 8 C -0.148 4.148 9 C 0.148 3.852 10 N -0.527 5.527 11 C 0.069 3.931 12 C -0.115 4.115 13 C -0.122 4.122 14 C 0.020 3.980 15 H 0.015 0.985 16 C -0.516 4.516 17 H 0.039 0.961 18 C 0.018 3.982 19 N -0.947 5.947 20 Si 0.946 3.054 21 H -0.262 1.262 22 H -0.301 1.301 23 H -0.257 1.257 24 C 0.096 3.904 25 H 0.177 0.823 26 H 0.178 0.822 27 H 0.138 0.862 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.033 0.967 33 H 0.060 0.940 34 H 0.266 0.734 35 H 0.057 0.943 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.746 -21.828 5.341 24.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.027 4.027 3 C -0.029 4.029 4 C -0.055 4.055 5 C -0.123 4.123 6 C -0.026 4.026 7 Cl -0.029 7.029 8 C -0.169 4.169 9 C 0.050 3.950 10 N -0.248 5.248 11 C -0.057 4.057 12 C -0.152 4.152 13 C -0.160 4.160 14 C 0.001 3.999 15 H 0.033 0.967 16 C -0.555 4.555 17 H 0.057 0.943 18 C -0.179 4.179 19 N -0.587 5.587 20 Si 0.774 3.226 21 H -0.188 1.188 22 H -0.229 1.229 23 H -0.182 1.182 24 C -0.029 4.029 25 H 0.195 0.805 26 H 0.195 0.805 27 H 0.156 0.844 28 H 0.072 0.928 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.597 -21.713 5.277 23.299 hybrid contribution 0.631 1.385 0.257 1.543 sum 7.229 -20.328 5.533 22.274 Atomic orbital electron populations 1.81203 1.13479 1.09381 1.09865 1.25580 0.92642 0.91927 0.92553 1.16280 0.83839 0.96344 1.06391 1.21383 0.93481 0.96306 0.94372 1.21304 0.93346 0.98114 0.99567 1.21179 0.85293 0.95851 1.00290 1.98405 1.09106 1.98572 1.96860 1.21585 0.93657 0.99129 1.02482 1.18725 0.89860 0.90828 0.95547 1.59415 1.57331 1.03180 1.04915 1.22166 0.98765 0.99263 0.85482 1.21637 0.99787 0.93972 0.99838 1.21930 1.00729 0.96777 0.96564 1.19066 0.95503 0.92510 0.92867 0.96702 1.21259 1.19738 0.94221 1.20255 0.94291 1.25742 0.98922 0.95245 0.97993 1.70031 1.43850 1.01621 1.43213 0.85887 0.79245 0.77822 0.79693 1.18757 1.22915 1.18176 1.21863 0.97556 0.87560 0.95941 0.80544 0.80483 0.84442 0.92810 0.88933 0.89079 0.92770 0.94827 0.92089 0.92545 0.92475 0.94080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -15.60 18.54 19.00 0.35 -15.25 16 2 C 0.29 8.11 14.81 88.33 1.31 9.42 16 3 C -0.02 -0.53 5.76 -21.14 -0.12 -0.65 16 4 C -0.03 -0.46 9.75 22.52 0.22 -0.24 16 5 C -0.11 -1.22 9.80 22.27 0.22 -1.00 16 6 C 0.00 0.04 6.32 22.36 0.14 0.18 16 7 Cl -0.06 -0.94 28.94 -2.72 -0.08 -1.02 16 8 C -0.15 -3.14 8.45 22.39 0.19 -2.95 16 9 C 0.15 3.69 4.67 38.67 0.18 3.87 16 10 N -0.53 -16.46 3.99 -694.62 -2.77 -19.23 16 11 C 0.07 1.85 5.16 86.33 0.45 2.30 16 12 C -0.11 -3.57 6.09 30.65 0.19 -3.38 16 13 C -0.12 -4.94 4.73 30.68 0.15 -4.79 16 14 C 0.02 0.91 1.85 -11.49 -0.02 0.89 16 15 H 0.01 0.75 7.21 -2.38 -0.02 0.73 16 16 C -0.52 -29.17 9.15 25.60 0.23 -28.94 16 17 H 0.04 2.40 7.99 -2.92 -0.02 2.38 16 18 C 0.02 1.07 5.45 84.65 0.46 1.53 16 19 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 20 Si 0.95 46.06 24.35 68.60 1.67 47.73 16 21 H -0.26 -11.92 6.89 99.48 0.69 -11.24 16 22 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 23 H -0.26 -12.13 6.53 99.48 0.65 -11.48 16 24 C 0.10 3.69 4.33 86.32 0.37 4.06 16 25 H 0.18 1.21 8.06 -2.91 -0.02 1.18 16 26 H 0.18 0.92 8.06 -2.91 -0.02 0.89 16 27 H 0.14 3.05 7.12 -2.91 -0.02 3.02 16 28 H 0.05 1.33 7.54 -2.39 -0.02 1.31 16 29 H 0.09 2.10 8.10 -2.38 -0.02 2.08 16 30 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.03 1.45 3.34 -2.39 -0.01 1.44 16 33 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 35 H 0.06 2.31 8.10 -2.38 -0.02 2.29 16 36 H 0.04 1.52 7.32 -2.39 -0.02 1.51 16 Total: -1.00 -69.46 312.21 4.46 -65.01 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: 1.02 Total: 1.44 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 3.96 Total: -19.69 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -2.12 Total: -93.45 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.67 Total: 47.73 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -69.46 4.46 -65.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330674.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.528 kcal (2) G-P(sol) polarization free energy of solvation -69.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.51 seconds