Wall clock time and date at job start Tue Mar 31 2020 06:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39759 * 120.19929 * 169.97199 * 3 2 1 5 5 C 1.37782 * 119.94037 * 179.97438 * 4 3 2 6 6 C 1.38575 * 120.35430 * 0.02562 * 5 4 3 7 7 C 1.38101 * 120.40826 * 359.97438 * 6 5 4 8 8 Cl 1.73602 * 119.97547 * 179.97438 * 7 6 5 9 9 C 1.38992 * 120.05203 * 359.97438 * 7 6 5 10 10 N 1.39098 * 120.17673 * 180.02562 * 9 7 6 11 11 C 1.46847 * 111.00073 * 118.97705 * 10 9 7 12 12 C 1.53035 * 109.52143 * 185.83649 * 11 10 9 13 13 C 1.53108 * 109.27978 * 300.81939 * 12 11 10 14 14 C 1.53117 * 109.16167 * 57.65604 * 13 12 11 15 15 H 1.09004 * 109.50223 * 62.28394 * 14 13 12 16 16 C 1.50703 * 109.53777 * 182.38333 * 14 13 12 17 17 H 1.08000 * 119.99656 * 119.82486 * 16 14 13 18 18 C 1.37874 * 120.00001 * 299.82237 * 16 14 13 19 19 N 1.31515 * 120.00223 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00071 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46848 * 60.00556 * 20 18 16 22 22 H 1.48500 * 109.47200 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47212 * 300.00357 * 20 18 16 24 24 C 1.46850 * 110.99555 * 243.18593 * 10 9 7 25 25 H 1.07997 * 120.02810 * 359.95647 * 4 3 2 26 26 H 1.07995 * 119.82526 * 180.02562 * 5 4 3 27 27 H 1.07996 * 119.79967 * 179.70343 * 6 5 4 28 28 H 1.08998 * 109.45974 * 305.85524 * 11 10 9 29 29 H 1.08995 * 109.46399 * 65.82198 * 11 10 9 30 30 H 1.09000 * 109.50187 * 180.87902 * 12 11 10 31 31 H 1.09003 * 109.50255 * 60.76575 * 12 11 10 32 32 H 1.09002 * 109.52831 * 297.74903 * 13 12 11 33 33 H 1.09007 * 109.52395 * 177.55923 * 13 12 11 34 34 H 0.96999 * 120.00480 * 180.02562 * 19 18 16 35 35 H 1.08992 * 109.46168 * 294.17640 * 24 10 9 36 36 H 1.08993 * 109.46113 * 54.14825 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2705 1.1904 -0.2103 5 6 4.6483 1.1850 -0.2087 6 6 5.3437 0.0047 0.0001 7 6 4.6642 -1.1793 0.2094 8 17 5.5467 -2.6515 0.4691 9 6 3.2744 -1.1931 0.2122 10 7 2.5874 -2.3840 0.4233 11 6 1.7504 -2.3025 1.6271 12 6 1.1254 -3.6706 1.9090 13 6 0.2809 -4.0983 0.7056 14 6 1.1656 -4.1285 -0.5438 15 1 1.9553 -4.8683 -0.4128 16 6 0.3301 -4.4918 -1.7443 17 1 0.2516 -3.8061 -2.5750 18 6 -0.3340 -5.6995 -1.7820 19 7 -0.2388 -6.5342 -0.7702 20 14 -1.3702 -6.1495 -3.2697 21 1 -0.5121 -6.1740 -4.4815 22 1 -1.9756 -7.4898 -3.0642 23 1 -2.4470 -5.1423 -3.4459 24 6 1.7894 -2.7470 -0.7548 25 1 2.7338 2.1131 -0.3743 26 1 5.1892 2.1055 -0.3710 27 1 6.4236 0.0099 -0.0053 28 1 2.3639 -2.0015 2.4763 29 1 0.9606 -1.5676 1.4712 30 1 0.4918 -3.6060 2.7936 31 1 1.9145 -4.4032 2.0787 32 1 -0.5317 -3.3867 0.5594 33 1 -0.1311 -5.0916 0.8842 34 1 -0.7057 -7.3840 -0.7969 35 1 0.9996 -2.0101 -0.8995 36 1 2.4313 -2.7690 -1.6354 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596331476.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:07 Heat of formation + Delta-G solvation = 39.740922 kcal Electronic energy + Delta-G solvation = -20897.781648 eV Core-core repulsion = 17793.110621 eV Total energy + Delta-G solvation = -3104.671027 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.64783 -39.02822 -37.74332 -37.08382 -35.71469 -33.79741 -32.12704 -31.83443 -30.20470 -27.03289 -25.82876 -24.44713 -23.35044 -22.66895 -20.58669 -20.01923 -18.63958 -17.52188 -17.11388 -16.65578 -16.18149 -15.95174 -15.62863 -15.41975 -15.10164 -14.59961 -14.47334 -14.29335 -14.12150 -13.84721 -13.81621 -13.51333 -12.89317 -12.85609 -12.74234 -12.69321 -12.61439 -12.26030 -11.95224 -11.82499 -11.69835 -11.50334 -11.03596 -10.80277 -10.44517 -9.92397 -9.62962 -9.50137 -8.12841 -6.26849 -0.37771 0.11825 1.21972 1.36679 1.38309 1.45812 1.60819 1.82007 2.37650 2.68071 2.74307 2.77061 3.14214 3.84909 3.99526 4.01696 4.13397 4.22058 4.29811 4.40490 4.43971 4.53651 4.58346 4.73776 4.85002 4.90734 5.04983 5.14931 5.17397 5.26845 5.26981 5.41957 5.56578 5.65163 5.76140 5.97522 6.07639 6.30915 6.33561 6.35128 6.82937 7.40528 8.91842 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.018551 B = 0.005428 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.986873 B = 5156.843830 C = 5593.893191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.267 3.733 3 C -0.076 4.076 4 C -0.049 4.049 5 C -0.094 4.094 6 C -0.065 4.065 7 C -0.033 4.033 8 Cl -0.056 7.056 9 C 0.129 3.871 10 N -0.503 5.503 11 C 0.066 3.934 12 C -0.108 4.108 13 C -0.101 4.101 14 C 0.060 3.940 15 H 0.006 0.994 16 C -0.539 4.539 17 H 0.045 0.955 18 C 0.019 3.981 19 N -0.911 5.911 20 Si 0.951 3.049 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.277 1.277 24 C 0.086 3.914 25 H 0.163 0.837 26 H 0.190 0.810 27 H 0.174 0.826 28 H 0.092 0.908 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.010 0.990 33 H 0.062 0.938 34 H 0.262 0.738 35 H 0.019 0.981 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.568 16.782 3.888 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.046 4.046 3 C -0.082 4.082 4 C -0.070 4.070 5 C -0.112 4.112 6 C -0.084 4.084 7 C -0.061 4.061 8 Cl -0.027 7.027 9 C 0.031 3.969 10 N -0.224 5.224 11 C -0.060 4.060 12 C -0.146 4.146 13 C -0.139 4.139 14 C 0.041 3.959 15 H 0.024 0.976 16 C -0.578 4.578 17 H 0.063 0.937 18 C -0.181 4.181 19 N -0.550 5.550 20 Si 0.776 3.224 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.203 1.203 24 C -0.040 4.040 25 H 0.180 0.820 26 H 0.207 0.793 27 H 0.191 0.809 28 H 0.110 0.890 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.029 0.971 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.037 0.963 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.143 16.069 4.054 21.152 hybrid contribution -1.264 -0.522 -0.876 1.624 sum 11.879 15.547 3.178 19.823 Atomic orbital electron populations 1.81304 1.13324 1.08456 1.09850 1.25825 0.93162 0.92654 0.92992 1.16896 0.83820 0.96748 1.10709 1.21548 0.95394 0.95689 0.94369 1.21525 0.92421 0.99298 0.97927 1.21702 1.02525 0.89393 0.94815 1.20971 0.89678 0.89826 1.05597 1.98388 1.74013 1.35497 1.94791 1.18874 0.92642 0.87931 0.97493 1.59449 1.30174 1.28270 1.04514 1.22188 0.94679 0.97376 0.91744 1.21563 0.98974 0.96072 0.97966 1.21437 0.97006 1.00121 0.95373 1.18513 0.93347 0.90698 0.93329 0.97585 1.21396 1.30273 1.02756 1.03361 0.93699 1.25655 0.97508 0.96170 0.98718 1.70004 1.43738 1.09582 1.31704 0.85725 0.79042 0.77345 0.80246 1.19332 1.20422 1.20300 1.22108 0.93672 0.97869 0.90329 0.81979 0.79285 0.80880 0.88963 0.95706 0.91195 0.91921 0.97142 0.91929 0.92897 0.96320 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -17.50 17.79 19.00 0.34 -17.16 16 2 C 0.27 8.79 10.14 88.33 0.90 9.69 16 3 C -0.08 -1.95 5.51 -21.16 -0.12 -2.07 16 4 C -0.05 -0.74 9.75 22.53 0.22 -0.52 16 5 C -0.09 -0.90 10.02 22.24 0.22 -0.67 16 6 C -0.06 -0.88 9.81 22.32 0.22 -0.66 16 7 C -0.03 -0.76 6.33 22.42 0.14 -0.62 16 8 Cl -0.06 -1.47 28.43 -2.72 -0.08 -1.55 16 9 C 0.13 3.74 4.68 38.68 0.18 3.92 16 10 N -0.50 -18.48 3.99 -694.50 -2.77 -21.25 16 11 C 0.07 2.38 5.03 86.33 0.43 2.82 16 12 C -0.11 -4.37 6.09 30.64 0.19 -4.19 16 13 C -0.10 -5.14 5.03 30.67 0.15 -4.99 16 14 C 0.06 3.18 2.26 -11.49 -0.03 3.15 16 15 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 16 C -0.54 -31.34 8.56 25.60 0.22 -31.12 16 17 H 0.04 2.59 7.74 -2.91 -0.02 2.57 16 18 C 0.02 1.08 5.31 84.65 0.45 1.53 16 19 N -0.91 -54.20 11.36 21.45 0.24 -53.96 16 20 Si 0.95 45.41 29.54 68.60 2.03 47.43 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 24 C 0.09 3.84 4.29 86.33 0.37 4.21 16 25 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 26 H 0.19 0.12 8.06 -2.91 -0.02 0.10 16 27 H 0.17 1.27 8.06 -2.91 -0.02 1.24 16 28 H 0.09 2.80 8.10 -2.39 -0.02 2.78 16 29 H 0.02 0.94 5.16 -2.39 -0.01 0.93 16 30 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 3.54 6.17 -2.38 -0.01 3.53 16 34 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 35 H 0.02 0.87 5.40 -2.39 -0.01 0.86 16 36 H 0.06 2.59 8.10 -2.39 -0.02 2.57 16 Total: -1.00 -70.60 310.98 4.41 -66.19 By element: Atomic # 1 Polarization: -1.29 SS G_CDS: 1.10 Total: -0.19 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 3.55 Total: -19.52 kcal Atomic # 7 Polarization: -90.18 SS G_CDS: -2.19 Total: -92.37 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.08 Total: -1.55 kcal Total: -70.60 4.41 -66.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596331476.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.929 kcal (2) G-P(sol) polarization free energy of solvation -70.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds