Wall clock time and date at job start Tue Mar 31 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39734 * 120.19884 * 260.27822 * 3 2 1 5 5 C 1.37901 * 119.90540 * 179.74473 * 4 3 2 6 6 Cl 1.73601 * 119.84123 * 180.25536 * 5 4 3 7 7 C 1.38664 * 120.31701 * 0.53134 * 5 4 3 8 8 C 1.38014 * 120.40906 * 359.72360 * 7 5 4 9 9 C 1.38878 * 120.08519 * 0.02562 * 8 7 5 10 10 N 1.39082 * 120.15846 * 180.02562 * 9 8 7 11 11 C 1.46848 * 111.00064 * 296.02209 * 10 9 8 12 12 C 1.53031 * 109.52827 * 185.83930 * 11 10 9 13 13 C 1.53122 * 109.27692 * 300.82419 * 12 11 10 14 14 C 1.53116 * 109.16236 * 57.65333 * 13 12 11 15 15 H 1.08998 * 109.50706 * 62.32451 * 14 13 12 16 16 C 1.50699 * 109.50515 * 182.40408 * 14 13 12 17 17 H 1.08000 * 119.99683 * 119.99609 * 16 14 13 18 18 C 1.37872 * 120.00398 * 299.99907 * 16 14 13 19 19 N 1.31526 * 119.99388 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 120.00512 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47142 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47261 * 120.00172 * 20 18 16 23 23 H 1.48505 * 109.47333 * 239.99747 * 20 18 16 24 24 C 1.46844 * 111.00483 * 60.23120 * 10 9 8 25 25 H 1.08001 * 120.05039 * 359.97438 * 4 3 2 26 26 H 1.07998 * 119.79328 * 179.74211 * 7 5 4 27 27 H 1.07994 * 119.95936 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.46449 * 305.85903 * 11 10 9 29 29 H 1.09004 * 109.46313 * 65.83365 * 11 10 9 30 30 H 1.08999 * 109.50431 * 60.76060 * 12 11 10 31 31 H 1.09001 * 109.50798 * 180.88234 * 12 11 10 32 32 H 1.09007 * 109.52120 * 177.55484 * 13 12 11 33 33 H 1.08995 * 109.52229 * 297.68100 * 13 12 11 34 34 H 0.97005 * 119.99089 * 179.97438 * 19 18 16 35 35 H 1.09005 * 109.46530 * 294.18437 * 24 10 9 36 36 H 1.09009 * 109.45833 * 54.14171 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2707 0.2049 1.1904 5 6 4.6497 0.1991 1.1843 6 17 5.5211 0.4464 2.6653 7 6 5.3437 0.0023 0.0000 8 6 4.6628 -0.1954 -1.1841 9 6 3.2740 -0.1980 -1.1965 10 7 2.5863 -0.3976 -2.3888 11 6 2.8485 0.6930 -3.3365 12 6 1.9669 0.5175 -4.5750 13 6 2.2732 -0.8342 -5.2261 14 6 2.0385 -1.9493 -4.2034 15 1 0.9900 -1.9551 -3.9054 16 6 2.3942 -3.2786 -4.8178 17 1 3.1680 -3.8883 -4.3752 18 6 1.7319 -3.7164 -5.9450 19 7 0.7893 -2.9740 -6.4837 20 14 2.1733 -5.3637 -6.7071 21 1 3.2583 -5.9996 -5.9174 22 1 0.9783 -6.2453 -6.7069 23 1 2.6345 -5.1556 -8.1033 24 6 2.9180 -1.7022 -2.9757 25 1 2.7347 0.3634 2.1145 26 1 6.4236 0.0035 0.0043 27 1 5.2105 -0.3476 -2.1023 28 1 2.6227 1.6482 -2.8625 29 1 3.8975 0.6732 -3.6320 30 1 0.9174 0.5509 -4.2824 31 1 2.1730 1.3184 -5.2851 32 1 1.6168 -0.9825 -6.0837 33 1 3.3121 -0.8530 -5.5549 34 1 0.3236 -3.2819 -7.2770 35 1 3.9668 -1.7108 -3.2726 36 1 2.7428 -2.4867 -2.2394 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596331556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:05 Heat of formation + Delta-G solvation = 46.650209 kcal Electronic energy + Delta-G solvation = -20320.685030 eV Core-core repulsion = 17216.313612 eV Total energy + Delta-G solvation = -3104.371418 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 7.21 seconds Orbital eigenvalues (eV) -40.33977 -37.93666 -36.72466 -36.01960 -33.92930 -32.04201 -31.58879 -30.04456 -28.91943 -25.05367 -24.11949 -23.97035 -21.75055 -21.32304 -19.10771 -18.67189 -17.05083 -16.12099 -16.01397 -15.43023 -14.78900 -14.49100 -14.27308 -13.88788 -13.74069 -13.16730 -13.01623 -12.89577 -12.74822 -12.63278 -12.58620 -12.08527 -11.92592 -11.65687 -11.34095 -11.17471 -11.01569 -10.84283 -10.72827 -10.22969 -9.96692 -9.61677 -9.26752 -9.22266 -8.87323 -8.62109 -8.39238 -8.11532 -6.03298 -4.10218 0.57451 0.89736 1.83889 2.87714 2.95008 3.26855 3.35430 3.38231 3.76595 3.93129 4.00535 4.41474 4.58765 4.78988 5.06400 5.14723 5.27291 5.44588 5.54288 5.56911 5.69134 5.85728 5.88929 5.99144 6.09297 6.25011 6.31778 6.37054 6.57360 6.60770 6.81954 7.04210 7.27163 7.36819 7.63082 7.69765 7.74786 7.98166 8.08555 8.37786 8.93528 9.54807 11.02724 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.021493 B = 0.004048 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.465207 B = 6915.024986 C = 7292.262667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C 0.269 3.731 3 C -0.002 4.002 4 C -0.060 4.060 5 C -0.050 4.050 6 Cl -0.067 7.067 7 C -0.072 4.072 8 C -0.140 4.140 9 C 0.164 3.836 10 N -0.517 5.517 11 C 0.069 3.931 12 C -0.118 4.118 13 C -0.111 4.111 14 C 0.055 3.945 15 H 0.035 0.965 16 C -0.516 4.516 17 H 0.055 0.945 18 C 0.064 3.936 19 N -0.886 5.886 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.073 3.927 25 H 0.143 0.857 26 H 0.138 0.862 27 H 0.142 0.858 28 H 0.062 0.938 29 H 0.035 0.965 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.033 0.967 34 H 0.260 0.740 35 H 0.031 0.969 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.249 8.670 12.771 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C -0.047 4.047 3 C -0.006 4.006 4 C -0.082 4.082 5 C -0.076 4.076 6 Cl -0.039 7.039 7 C -0.092 4.092 8 C -0.160 4.160 9 C 0.066 3.934 10 N -0.239 5.239 11 C -0.056 4.056 12 C -0.156 4.156 13 C -0.150 4.150 14 C 0.036 3.964 15 H 0.054 0.946 16 C -0.555 4.555 17 H 0.073 0.927 18 C -0.138 4.138 19 N -0.525 5.525 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.052 4.052 25 H 0.161 0.839 26 H 0.156 0.844 27 H 0.160 0.840 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.913 8.685 12.817 17.387 hybrid contribution 1.603 -0.923 -0.568 1.935 sum 9.516 7.761 12.249 17.344 Atomic orbital electron populations 1.81184 1.11871 1.07801 1.07491 1.25058 0.92049 0.94168 0.93409 1.15861 0.85163 1.06636 0.92988 1.20915 0.92066 0.97715 0.97474 1.20592 0.91869 1.07143 0.88042 1.98376 1.76288 1.95320 1.33879 1.21122 1.00737 0.96921 0.90422 1.21771 0.94376 1.01120 0.98758 1.19098 0.90151 0.92598 0.91532 1.59573 1.56406 1.05211 1.02709 1.22125 0.98352 0.92088 0.93055 1.21701 0.99533 0.99741 0.94651 1.21678 1.00189 0.91582 1.01506 1.18686 0.95334 0.93742 0.88625 0.94641 1.21118 1.20185 1.03012 1.11183 0.92657 1.24929 0.94839 0.97095 0.96898 1.69904 1.23780 1.37058 1.21758 0.86555 0.78342 0.84118 0.79086 1.19808 1.21013 1.21051 1.22485 0.98644 0.85681 0.98387 0.83888 0.84397 0.84043 0.91955 0.94648 0.91927 0.92911 0.88844 0.94853 0.93016 0.95038 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.38 18.54 41.83 0.78 -6.60 16 2 C 0.27 4.26 14.81 -22.47 -0.33 3.92 16 3 C 0.00 -0.02 5.76 -106.62 -0.61 -0.64 16 4 C -0.06 -0.63 9.53 -39.15 -0.37 -1.00 16 5 C -0.05 -0.48 6.31 -39.55 -0.25 -0.73 16 6 Cl -0.07 -0.59 28.94 -51.86 -1.50 -2.09 16 7 C -0.07 -0.68 9.81 -39.51 -0.39 -1.07 16 8 C -0.14 -1.60 8.67 -39.43 -0.34 -1.94 16 9 C 0.16 2.30 4.67 -83.54 -0.39 1.91 16 10 N -0.52 -8.82 3.99 -170.89 -0.68 -9.51 16 11 C 0.07 1.10 5.16 -3.84 -0.02 1.08 16 12 C -0.12 -2.17 6.09 -26.65 -0.16 -2.33 16 13 C -0.11 -2.48 5.02 -26.61 -0.13 -2.62 16 14 C 0.05 1.31 2.26 -91.69 -0.21 1.11 16 15 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 16 C -0.52 -13.62 8.56 -34.44 -0.29 -13.91 16 17 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -24.79 11.35 55.43 0.63 -24.16 16 20 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.07 1.42 4.33 -3.84 -0.02 1.40 16 25 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 26 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 27 H 0.14 1.54 7.12 -52.49 -0.37 1.17 16 28 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 29 H 0.04 0.52 7.53 -51.93 -0.39 0.13 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.03 0.59 7.34 -51.93 -0.38 0.21 16 36 H 0.06 1.28 8.11 -51.92 -0.42 0.86 16 LS Contribution 319.06 15.07 4.81 4.81 Total: -1.00 -28.30 319.06 -8.99 -37.29 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -4.38 Total: -2.33 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -3.62 Total: -13.19 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.72 Total: -40.27 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.30 -8.99 -37.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596331556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.944 kcal (2) G-P(sol) polarization free energy of solvation -28.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.22 seconds