Wall clock time and date at job start Tue Mar 31 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39734 * 120.19884 * 260.27822 * 3 2 1 5 5 C 1.37901 * 119.90540 * 179.74473 * 4 3 2 6 6 Cl 1.73601 * 119.84123 * 180.25536 * 5 4 3 7 7 C 1.38664 * 120.31701 * 0.53134 * 5 4 3 8 8 C 1.38014 * 120.40906 * 359.72360 * 7 5 4 9 9 C 1.38878 * 120.08519 * 0.02562 * 8 7 5 10 10 N 1.39082 * 120.15846 * 180.02562 * 9 8 7 11 11 C 1.46848 * 111.00064 * 296.02209 * 10 9 8 12 12 C 1.53031 * 109.52827 * 185.83930 * 11 10 9 13 13 C 1.53122 * 109.27692 * 300.82419 * 12 11 10 14 14 C 1.53116 * 109.16236 * 57.65333 * 13 12 11 15 15 H 1.08998 * 109.50706 * 62.32451 * 14 13 12 16 16 C 1.50699 * 109.50515 * 182.40408 * 14 13 12 17 17 H 1.08000 * 119.99683 * 119.99609 * 16 14 13 18 18 C 1.37872 * 120.00398 * 299.99907 * 16 14 13 19 19 N 1.31526 * 119.99388 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 120.00512 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47142 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47261 * 120.00172 * 20 18 16 23 23 H 1.48505 * 109.47333 * 239.99747 * 20 18 16 24 24 C 1.46844 * 111.00483 * 60.23120 * 10 9 8 25 25 H 1.08001 * 120.05039 * 359.97438 * 4 3 2 26 26 H 1.07998 * 119.79328 * 179.74211 * 7 5 4 27 27 H 1.07994 * 119.95936 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.46449 * 305.85903 * 11 10 9 29 29 H 1.09004 * 109.46313 * 65.83365 * 11 10 9 30 30 H 1.08999 * 109.50431 * 60.76060 * 12 11 10 31 31 H 1.09001 * 109.50798 * 180.88234 * 12 11 10 32 32 H 1.09007 * 109.52120 * 177.55484 * 13 12 11 33 33 H 1.08995 * 109.52229 * 297.68100 * 13 12 11 34 34 H 0.97005 * 119.99089 * 179.97438 * 19 18 16 35 35 H 1.09005 * 109.46530 * 294.18437 * 24 10 9 36 36 H 1.09009 * 109.45833 * 54.14171 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2707 0.2049 1.1904 5 6 4.6497 0.1991 1.1843 6 17 5.5211 0.4464 2.6653 7 6 5.3437 0.0023 0.0000 8 6 4.6628 -0.1954 -1.1841 9 6 3.2740 -0.1980 -1.1965 10 7 2.5863 -0.3976 -2.3888 11 6 2.8485 0.6930 -3.3365 12 6 1.9669 0.5175 -4.5750 13 6 2.2732 -0.8342 -5.2261 14 6 2.0385 -1.9493 -4.2034 15 1 0.9900 -1.9551 -3.9054 16 6 2.3942 -3.2786 -4.8178 17 1 3.1680 -3.8883 -4.3752 18 6 1.7319 -3.7164 -5.9450 19 7 0.7893 -2.9740 -6.4837 20 14 2.1733 -5.3637 -6.7071 21 1 3.2583 -5.9996 -5.9174 22 1 0.9783 -6.2453 -6.7069 23 1 2.6345 -5.1556 -8.1033 24 6 2.9180 -1.7022 -2.9757 25 1 2.7347 0.3634 2.1145 26 1 6.4236 0.0035 0.0043 27 1 5.2105 -0.3476 -2.1023 28 1 2.6227 1.6482 -2.8625 29 1 3.8975 0.6732 -3.6320 30 1 0.9174 0.5509 -4.2824 31 1 2.1730 1.3184 -5.2851 32 1 1.6168 -0.9825 -6.0837 33 1 3.3121 -0.8530 -5.5549 34 1 0.3236 -3.2819 -7.2770 35 1 3.9668 -1.7108 -3.2726 36 1 2.7428 -2.4867 -2.2394 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596331556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:01 Heat of formation + Delta-G solvation = 32.304556 kcal Electronic energy + Delta-G solvation = -20321.307104 eV Core-core repulsion = 17216.313612 eV Total energy + Delta-G solvation = -3104.993492 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 5.05 seconds Orbital eigenvalues (eV) -41.43260 -39.17653 -37.70321 -37.14547 -35.58225 -33.66676 -32.51454 -31.74871 -30.05464 -26.95783 -25.41764 -24.91857 -23.28226 -22.64612 -20.39098 -20.00430 -18.60999 -17.56220 -17.03651 -16.66654 -16.33949 -15.90650 -15.40479 -15.12486 -15.00961 -14.56876 -14.40678 -14.20034 -14.12291 -13.96149 -13.90413 -13.49249 -13.08816 -12.87905 -12.73929 -12.67805 -12.54037 -12.21478 -11.91610 -11.87110 -11.75377 -11.43593 -10.96493 -10.71217 -10.40316 -10.12702 -9.61061 -9.42262 -8.08455 -6.22901 -0.36969 0.02937 1.05303 1.40768 1.43185 1.53845 1.74178 1.86849 2.41956 2.69645 2.76965 2.93657 3.19497 3.76981 3.98653 4.04707 4.15412 4.24862 4.27376 4.40261 4.55870 4.65430 4.68796 4.77065 4.86174 4.94036 5.00442 5.06983 5.14198 5.26390 5.33745 5.45134 5.53223 5.64108 5.86626 6.04937 6.18242 6.37762 6.40158 6.54651 6.90257 7.45783 8.96372 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.021493 B = 0.004048 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.465207 B = 6915.024986 C = 7292.262667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.287 3.713 3 C -0.017 4.017 4 C -0.047 4.047 5 C -0.045 4.045 6 Cl -0.052 7.052 7 C -0.053 4.053 8 C -0.136 4.136 9 C 0.143 3.857 10 N -0.534 5.534 11 C 0.074 3.926 12 C -0.112 4.112 13 C -0.103 4.103 14 C 0.052 3.948 15 H -0.015 1.015 16 C -0.532 4.532 17 H 0.057 0.943 18 C 0.013 3.987 19 N -0.917 5.917 20 Si 0.954 3.046 21 H -0.263 1.263 22 H -0.286 1.286 23 H -0.279 1.279 24 C 0.090 3.910 25 H 0.161 0.839 26 H 0.169 0.831 27 H 0.151 0.849 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.036 0.964 34 H 0.259 0.741 35 H 0.046 0.954 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.405 9.249 14.203 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.028 4.028 3 C -0.022 4.022 4 C -0.069 4.069 5 C -0.072 4.072 6 Cl -0.023 7.023 7 C -0.073 4.073 8 C -0.156 4.156 9 C 0.046 3.954 10 N -0.256 5.256 11 C -0.051 4.051 12 C -0.150 4.150 13 C -0.141 4.141 14 C 0.033 3.967 15 H 0.003 0.997 16 C -0.570 4.570 17 H 0.075 0.925 18 C -0.186 4.186 19 N -0.557 5.557 20 Si 0.780 3.220 21 H -0.187 1.187 22 H -0.212 1.212 23 H -0.205 1.205 24 C -0.035 4.035 25 H 0.179 0.821 26 H 0.186 0.814 27 H 0.169 0.831 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.084 9.273 14.270 20.310 hybrid contribution 0.685 -1.074 -0.913 1.567 sum 11.768 8.199 13.358 19.599 Atomic orbital electron populations 1.81187 1.13480 1.10018 1.09161 1.25575 0.92675 0.92633 0.91929 1.15924 0.83667 1.08659 0.93968 1.21047 0.92531 0.96265 0.97025 1.20685 0.91650 1.06029 0.88848 1.98395 1.75785 1.95137 1.32970 1.21410 1.02154 0.94420 0.89304 1.21783 0.92946 1.00886 0.99992 1.19069 0.91280 0.94926 0.90117 1.59315 1.58044 1.04235 1.03960 1.22107 0.98696 0.92594 0.91725 1.21599 0.98828 0.98104 0.96447 1.21453 0.99265 0.93424 0.99966 1.18592 0.93317 0.93756 0.91039 0.99668 1.21522 1.20030 1.04221 1.11269 0.92466 1.25728 0.94841 1.00422 0.97564 1.70067 1.24815 1.38666 1.22116 0.85566 0.78075 0.80007 0.78363 1.18736 1.21240 1.20523 1.22061 0.98052 0.87230 0.96164 0.82099 0.81369 0.83113 0.89825 0.92536 0.94350 0.90444 0.92638 0.94477 0.93191 0.93635 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -17.23 18.54 19.00 0.35 -16.88 16 2 C 0.29 9.11 14.81 88.33 1.31 10.42 16 3 C -0.02 -0.44 5.76 -21.16 -0.12 -0.56 16 4 C -0.05 -0.85 9.53 22.55 0.21 -0.64 16 5 C -0.05 -0.71 6.31 22.29 0.14 -0.56 16 6 Cl -0.05 -0.71 28.94 -2.72 -0.08 -0.79 16 7 C -0.05 -0.77 9.81 22.32 0.22 -0.55 16 8 C -0.14 -2.63 8.67 22.37 0.19 -2.43 16 9 C 0.14 3.75 4.67 38.66 0.18 3.93 16 10 N -0.53 -17.87 3.99 -694.58 -2.77 -20.64 16 11 C 0.07 2.23 5.16 86.32 0.45 2.68 16 12 C -0.11 -4.12 6.09 30.65 0.19 -3.93 16 13 C -0.10 -4.71 5.02 30.67 0.15 -4.56 16 14 C 0.05 2.57 2.26 -11.49 -0.03 2.55 16 15 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 16 C -0.53 -28.71 8.56 25.60 0.22 -28.49 16 17 H 0.06 2.99 7.74 -2.91 -0.02 2.96 16 18 C 0.01 0.72 5.30 84.65 0.45 1.17 16 19 N -0.92 -53.34 11.35 21.45 0.24 -53.10 16 20 Si 0.95 43.21 29.54 68.60 2.03 45.24 16 21 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 24 C 0.09 3.54 4.33 86.33 0.37 3.91 16 25 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 26 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 27 H 0.15 2.68 7.12 -2.91 -0.02 2.66 16 28 H 0.08 2.19 8.10 -2.39 -0.02 2.18 16 29 H 0.06 1.48 7.53 -2.38 -0.02 1.46 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.06 2.96 6.15 -2.38 -0.01 2.94 16 33 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 35 H 0.05 1.64 7.34 -2.38 -0.02 1.62 16 36 H 0.05 2.14 8.11 -2.38 -0.02 2.12 16 Total: -1.00 -64.71 319.06 4.80 -59.91 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: 1.09 Total: 3.33 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 3.94 Total: -17.07 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -2.18 Total: -90.62 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -64.71 4.80 -59.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596331556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.215 kcal (2) G-P(sol) polarization free energy of solvation -64.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.05 seconds